chapter 3 Flashcards

(56 cards)

1
Q

what makes a compound organic

A

contains carbon in it (plus hydrogen)

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2
Q

The large molecules in living organisms fall into four categories. Name all four.

A
  • Carbohydrates (macromolecule)
  • Lipids
    -Protein (macromolecule)
    -Nucleic Acids (macromolecule)
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3
Q

Describe how bonds are created. Explain what makes carbon special during these processes.

A

Carbon has two shells surrounding the nucleus, and as we learned in Chemistry, the first shell can only contain two electrons while the second can contain 8. Within shells, electrons form pairs and the number of unpaired electrons within the valence shell is called the atoms valence. Carbons first shell is complete but within its second shell there are four unpaired electrons. This means that Carbon can bond to other atoms through four different connecting areas. If two of these unpaired atoms from carbon both connect to a molecule with two unpaired electrons, then a double bond is formed. On the other hand if only a single unpaired electron from carbon bonds with a single bond from another atom, then this creates a single bond.

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4
Q

What is a hydrocarbon?

A

Organic compounds made entirely of Carbon and hydrogen. Hydrocarbons exist throughout the body in certain molecules and are hydrophobic due to the nonpolar linkage between carbon and hydrogen.

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5
Q

What does ATP stand for?
What are the components of ATP?
How is energy released though this reaction?

A

-Adenosine triphosphate
-3 phosphate groups linked by single bonds, connected to Adenosine.
- When ATP reacts with water, of the bonds is broken and a single phosphate group is released. The breaking of this bond causes energy to flow into the system.

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6
Q

What is a Macromolecule?

A

Macromolecules are long chain-like molecules called polymers.

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7
Q

What is a monomer?

A

The building block to creating polymers which when arranged in special ways can create large and complex molecules.

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8
Q

How are enzymes used within the synthesis and breakdown of polymers?

A

enzymes are specialized molecules that speed up these chemical reactions by lowering the bar at which the bonds within a molecule are broken.

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9
Q

What is dehydration reaction?

A

This is when you remove H2O from a polymer chain. When these polymers are formed the monomers provide OH on one side and H on the other. By removing these functional groups from the monomers (in the form of water), they then create a bond between each other.

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10
Q

What is hydrolysis?

A

This is when you add H2O to the bond between two monomers. The OH will go to one monomer and the H with go to the other.

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11
Q

What causes diversity within Polymers?

A

All molecules are created from about 40-50 different types of monomers. The arrangement of these monomers is key to the function of the molecules.

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12
Q

What is a Carbohydrate?
What are the components of a carbohydrate?

A

the sugars and the polymers of sugars within a living organism. Serves as fuel and building material within our body. The smallest components of a carbohydrate are monosaccharaides which are combined through dehydration reaction to create disaccharides (2 mono-) and can then build up to create polysaccharides.

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13
Q

What is the link between two monosaccharaides called?

A

Glycosidic linkage… created by dehydration reaction between monomers.

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14
Q

Describe the typical sugar monosaccharaides chemical composition.

A

C6H12O6 = glucose

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15
Q

What shape does glucose and other sugars take while in water?

A

ring shape

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16
Q

How are sugars such as glucose important for cellular respiration?

A

during this process the cells extract energy from glucose though a series of reactions that breaks down the glucose molecule.

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17
Q

What is a polysaccharide?

A

A long string of monosaccharaides chained together by Glycosidic linkages.

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18
Q

What are storage polysaccharide?

A

These are long chains of polysaccharides that are stored within the body for later uses. A great example of this would be starch. Starch is a lot of glucose monomers linked together. The cells within plants can actually store these starch polysaccharides and then break them down through hydrolysis when the glucose is needed. Animals store glycogen which is stored like starch and then broken down to get glucose when the body needs sugar.

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19
Q

What are structural polysaccharides?

A

These are polysaccharides used to build strong materials for the body. An example would be cellulose which makes up the whole composition of a plant basically. As a building material glucose can arrange itself into different shapes to serve distinct purposes .

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20
Q

Describe the glucose alpha ring formation

A

All the glucose monosaccharaides are in the upright position in which the hydroxide groups are all in the same orientation. (example: starch)

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21
Q

Describe the glucose beta ring formation

A

Every other monosaccharide is upside down, meaning that the hydroxide groups are alternating top and bottom. (example: cellulose)

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22
Q

Why cant we digest cellulose and why is cellulose important in our bodies?

A

-Enzymes that break down our food are unable to hydrolyze the beta linkages in cellulose since the hydroxyl groups are all over the place.
-Cellulose is important for our digestion. Causes stomach lining to secrete a mucus that makes digestion easier.

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23
Q

What is a major trait that describes all lipids?

A

They are hydrophobic. Lipids have huge hydrocarbon chains which with their nonpolar property causes the lipids to be hydrophobic.

24
Q

What is a fat made up of?

A

glycerol and fatty acid chains. A carboxyl group at the end of the fatty acid is what makes the linkage to glycerol possible through dehydration reaction.

25
what is triacylglycerol?
A fat with three fatty acid chains attached to it.
26
What is a saturated fat?
A fat that has no double bonds between the carbon atoms throughout the carbons in the fatty acid chains. (The flexibility of these fats allows them to be packed together tightly, meaning that they are typically solid at room temp)
27
What is an unsaturated fat?
The fatty acid chains have one or more double bonds along the hydrocarbon chain. (there is less hydrogen obviously because more of the connecting sections that carbon has is occupied by linking the carbons together.) These double bonds create a kink in the hydrocarbon chains. These fats are typically liquid at room temp and are considered oils.
28
What is the major function of fat within living organisms?
Fats are huge energy storages. While polysaccharides like starch do contain a lot of energy, Fats have even more and they are compact.
29
why are phospholipids important within the body?
Phospholipids are the major components within the cell membrane. The hydrophilic heads go to the outside and create a barrier all around the cell from the water around it. The hydrophobic tails are protected inside the shell a swell.
30
Describe the shape of a phospholipid.
has only two fatty acid chains and then the extra hydroxyl group in glycerol is attached to a phosphate group (causes a negative electrical charge in the cell)
31
Describe the properties of the head and tail of a phospholipid.
The head is hydrophilic (phosphate group likes water)and the tail is hydrophobic (hydrocarbon nonpolar properties don't like water).
32
What do phospholipids do when they are added to water?
They create a structure called "bilayers" which is where you have two layers and the heads of the phospholipids face outwards towards the water and the tails are placed inside the barrier, away from water.
33
What is a steroid?
carbon skeleton consisting of four fused rings and a side chain that differentiates the different steroids. - sex hormones saturated fats -> cholesterol = baddddd
34
Why are proteins important?
have many many functions that are determined by their structure. Play a role in defense, storage, transport, cellular communication and structural support.
35
enzymes are a type of protein. How are enzymes important within our bodies?
Enzymes are catalysts which means that the speed up reactions without being consumed by the reaction itself.
36
What is a polypeptide?
A long chain of amino acids that will then arrange to make complex proteins. (will be folded and coiled into these shapes)
37
What is an amino acid?
organic molecule that is made up of an amino and carboxyl group.
38
How is an alpha carbon used within an amino acid
This is basically a Carbon in the middle of the amino group, carboxyl group and n extra hydrogen and then an additional side chain (R). The different amino acids only differentiate through this side chain.
39
what is a Peptide bond?
the covalent bond that is created through the process of dehydration reaction to join two amino acids --> creating polypeptides.
40
Describe the Primary structure of a protein formation.
This is just the long amino acid sequence that makes up that specific protein (genetic information is what causes the amino acids to line up in a specific way).
41
Describe the Secondary structure of a protein formation.
This is when the long amino acid chain begins to take on its structure. there are two different types of formations: alpha helix which is basically a coil help together by weak hydrogen bonds. the other is the beta pleated sheet. Several of these sheets are layered on top of each other and bonded by hydrogen bonds.
42
Describe the Tertiary structure of a protein formation.
This stage of protein formation is when a hydrophobic reaction happens. The side chains within the amino acids is hydrophobic and will therefor hide itself within the protein. Van der Waals interactions bond these side chains together to create a stable structure. Additionally disulfide bridges are created to stabilize even more.
43
Describe the Quaternary structure of a protein formation.
This is the overlapping and bonding of multiple individual polypeptide subunits. This last stage defines the shape of the protein for its purpose.
44
Describe how an irregular change in primary structure can completely change a protein
Sickle-Cell disease. a single amino acid within the polypeptide chain was altered, and then the whole function and physical attributes were changed within the cell.
45
What is denaturation?
This is when the protein is in an environment that it is not accustomed to. This will cause the polypeptides to unravel. in some cases they can be renatured back to their protein shape.
46
two types of nucleic acid
DNA and RNA
47
how does DNA/RNA work together?
the genes along a DNA molecule directs synthesis of mRNA, which then interacts with the cell's protein-synthesizing machinery to direct polypeptide that folds itself into a protein
48
components of nucleic acids
nucleic acids are macromolecules that exist as polymers called polynucleotides, consisting of monomers called nucleotides
49
two types of nitrogenous bases
pyrimidine and purines
50
what is a pyrimidine
includes on six-membered rind of carbon and nitrogen atoms (C), (T), and (U)
51
what is a purine
larger than a pyrimidine, 6-membered ring fused to a 5 membered ring (A) and (G)
52
deoxyribose
sugar used to create DNA
53
ribose
sugar used to create RNA
54
double helix
strands that spiral around an imaginary axis forms the double helix
55
antiparallel
the arrangement where the two backbones run in opposite directions to each other
56
DNA and evolution
closely related organisms have similar DNA sequences