Chapter 6 Flashcards
Compounds of carbon, hydrogen, oxygen, and nitrogen and arranged as strands of amino acids (some amino acids contain the element sulfur). One key difference from carbohydrates and fats is that this contain nitrogen atoms in addition to the carbon, hydrogen, and oxygen atoms that all three energy-yielding nutrients contain.
Protein
Building blocks of protein. The nitrogen atoms of proteins give the name amino (which means “nitrogen containing”).
Amino acids
A strand of amino acids that makes up a protein my contain how many different kinds of amino acids?
20
The nitrogen-containing portion of an amino acid. All amino acids have the same simple chemical backbone consisting of a single carbon atom with both this (the nitrogen containing part) and an acid group attached to it.
amine group
Each amino acid also has this distinctive chemical chain attached to the center carbon of the backbone. This chain gives each amino acid its identity and chemical nature. Some 20 amino acids, each with a different chain, make up most of the proteins of living tissue. This chain make the amino acids differ in size, shape, and electrical charge.
side chain
Learn:
While amino acids form large protein molecules, the side chains help determine the protein’s molecular shape and behavior.
A body cannot make nine of the amino acids or makes them too slowly to meet its needs. This is where these amino acids come into play. Without these, the body cannot build the proteins it needs to do its work. Can be replenished only from foods, a person must frequently eat the foods that provide them.
essential amino acids ( 9 are essential amino acids)
An amino acid that is normally nonessential but must be supplied by the diet in special circumstances when the need for it exceeds the body’s ability to produce it.
Example: Under special circumstances, a nonessential amino acid can become essential. For example, the body normally makes tyrosine (a nonessential amino acid) from the essential amino acid phenylalanine. If the diet fails to supply enough phenylalanine or if the body cannot perform the conversion for some reason, then tyrosine becomes this.
conditionally essential amino acid
Recycling Amino Acids:
The body not only makes some amino acids but also breaks protein molecules apart and reuses their amino acids. Both food proteins after digestion and body proteins when they have finished their cellular work are dismantled to liberate their component amino acids. Amino acids from both sources provide the cells with raw materials from which they can build the protein molecules they need. Cells can also use the amino acids for energy and discard the nitrogen atoms as wastes. By reusing intact amino acids to build proteins, the body recycles and conserves nitrogen, a valuable commodity, while easing its nitrogen disposal burden.
This recycling system also provides access to an emergency fund of amino acids in times of fuel, glucose, or protein deprivation. At such times, tissues can break down their own proteins, sacrificing working molecules before the ends of their normal lifetimes, to supply amino acids and energy to the body’s cells.
How Amino Acids Build Proteins:
In the first step of making a protein, each amino acid is hooked to the next.
A chemical bond, called a peptide bond, is formed between the amine group end of one amino acid and the acid group end of the next.
The side chains bristle out from the backbone of the structure, giving the protein molecule its unique character.
- Amino acids do not remain straight and each one are chemically attracted to each other causing some segments of the strand to coil, somewhat like a metal spring and then form a globular structure.
Other strands link together in other ways to form different structures that perform specific functions.
Chemical bond. A bond that connects one amino acid with another, forming a link in a protein chain. Is a complete strand of amino acids. Is formed between the amine group end of one amino acid and the acid group end of the next.
Peptide bond
A string of about 10-50 amino acids bonded together
polypeptide
A particular protein that performs the tasks of carrying and storing materials in their interiors. Are water-soluble and some form hollow balls.
globular shape
A form of this protein acts like glue between cells. The chief protein of most connective tissues, including scars, ligaments, and tendons, and the underlying matrix on which bones and teeth are built.
collagen
The most fascinating proteins are these which act on other substances to change them chemically. In other words, proteins that facilitate chemical reactions without being changed in the process. Protein catalysts.
enzymes
The large, globular protein molecule that is packed into the red blood cells by the billions and carries oxygen around the body via the bloodstream- is made of four associated protein strands, each holding the mineral iron.
hemoglobin
For each protein, there exists a standard amino acid sequence, and that sequence is specified by the genes. Often, if a wrong amino acid is inserted, the result can be disastrous to health causing a disease such as this. in which hemoglobin, the oxygen-carrying protein of the red blood cells, is abnormal—is an example of an inherited variation in the amino acid sequence. Normal hemoglobin contains two kinds of protein strands. In sickle-cell disease, one of the strands is an exact copy of that in normal hemoglobin, but in the other strand, the sixth amino acid is valine rather than glutamic acid. This replacement of one amino acid so alters the protein that it is unable to carry and release oxygen. The red blood cells collapse from the normal disk shape into crescent shapes. If too many crescent-shaped cells appear in the blood, the result is abnormal blood clotting, strokes, bouts of severe pain, susceptibility to infection, and early death. Thanks to rapid advances in genetic research, gene-based therapies to treat sickle-cell disease may become a reality.
Sickle-cell disease
Protein Synthesis:
1.) The DNA serves as a template to make strands of messenger RNA (mRNA). Each mRNA strands copies exactly in the instructions for making some protein the cells needs.
2.) The mRNA leaves the nucleus through the nucleus membrane. DNA remains inside the nucleus.
3.) The mRNA attaches itself to one of the protein-making machines of the cell, a ribosome.
4.) transfer RNA 9tRNA), collects amino acids from the cell fluid. Each tRNA carries its amino acid to the mRNA, which dictates the sequence in which the amino acids will be attached to form the protein strands. Thus the mRNA ensures the amino acids are lined up in the correct sequence.
5.) As the amino acids are lined up in the right sequence, and the ribosome moves along the mRNA, an enzyme attaches one amino acid after another to the growing protein strand. The tRNA are freed to return for more amino acids. When all the amino acids have been attached, the completed protein is released.
6.) Finally, the mRNA and ribosome separate. It takes many words to describe these events, but in the cell, 40-100 amino acids can be added to a growing protein strand in only a second. Furthermore, several ribosomes can simultaneously wok on the same mRNA to make many copies of the protein.
Nutrients, including amino acids and proteins, do not change DNA structure, but they greatly influence gene expression. This is the science of how food components, such as nutrients, interact with the body’s genetic material. As research in this advances, researchers hope to one day use nutrients to influence a person’s genes in ways that reduce that individual’s disease risks, but for now, that day is remote. The Think Fitness feature addresses a related concern of exercisers and athletes about whether extra dietary protein or amino acids can trigger the synthesis of muscle tissue and augment strength.
nutritional genomics
Can Eating Extra Protein Make Muscles Grow Stronger?
No and Yes
No: Athletes and fitness seekers cannot stimulate their muscles to gain size and strength simply by consuming more protein or amino acids. Physical work is necessary to trigger the genes to build more of the muscle tissue needed for sport. ]
Yes: Reflects research suggesting that well-timed protein intakes can stimulate muscle protein synthesis. Protein intake cannot replace exercise in this regard, however, as many supplement sellers would have people believe.
Exercise generates cellular messages that stimulate the DNA to begin synthesizing the muscle proteins needed to perform the work. Current evidence does not support the claim that protein supplementation can increase muscle strength or athletic performance in well-fed people, regardless of its timing.
When a protein molecule loses its shape, it can no longer function as it was designed to do. This is how many agents damage living cells: they cause this of their proteins. It is the irreversible change in a protein’s folded shape brought about by heat, acids, bases, alcohol, salts of heavy metals, or other agents. In digestion, however, this is useful: it unfolds and inactivates the proteins in food, exposes their peptide bonds to the digestive enzymes that sever them. Also this occurs during the cooking of foods. Cooking eggs denatures their proteins and makes them firm. Heat unfolds and uncoils protein structures, causing eggs to become firm as they cook. Among egg proteins that heat denatures, two are notable in nutrition. One binds the vitamin biotin and the mineral iron: when this protein is denatured, it releases biotin and iron, making them available to the body. The other slows protein digestion; denaturing this protein allows digestion to proceed normally. Many well-known poisons are salts of heavy metals such as mercury and silver; these poisons denature protein strands wherever they touch them. The common first-aid antidote for swallowing a heavy-metal poison is to drink milk. The poison then acts on the protein of the milk rather than on the protein tissues of the mouth, esophagus, and stomach. Later, vomiting can be induced to expel the poison that has combined with the milk.
Denaturation
For digestion, proteins must be broken down into amino acids. But nothing happens to proteins until they reach what organ first?
Stomach
Protein Digestion:
1.) Strong hydrochloric acid produced by the stomach denatures proteins in food. This acid helps uncoil the protein’s tangled strands so that molecules of the stomach’s protein-digesting enzyme can attack the peptide bonds. You might expect that the stomach enzyme, being a protein itself, would be denatured by the stomach’s acid. Unlike most enzymes, though, the stomach enzyme functions best in an acid environment. Its job is to break other protein strands into smaller pieces. The stomach lining, which is also made partly of protein, is protected against attack by acid and enzymes by the coat of mucus secreted by its cells.
Proteins (enzymes), activated by acid, digest proteins from food, denatured by acid. Digestion and absorption of other nutrients, such as iron, also rely on the stomach’s ability to produce strong acid. The acid in the stomach is so strong (pH 1.5) that no food is acidic enough to make it stronger; for comparison, the pH of vinegar is about 3.
By the time most proteins slip from the stomach into the small intestine, they are denatured and cleaved into smaller pieces. A few single amino acids have been released, but most of the original protein enters as long strands—polypeptides. In the small intestine, alkaline juice from the pancreas neutralizes the acid delivered by the stomach. The pH rises to about 7 (neutral), enabling the next enzyme team to accomplish the final breakdown of the strands. Protein-digesting enzymes from the pancreas and intestine continue working until almost all pieces of protein are broken into single amino acids or into strands of two or three amino acids, dipeptides or tripeptides summarizes the whole process of protein digestion.
What Happens to Amino Acids After Protein is Digested?
The cells all along the small intestine absorb single amino acids. As for dipeptides and tripeptides, enzymes on the cells’ surfaces split most of them into single amino acids, and the cells absorb them, too. Dipeptides and tripeptides are also absorbed as-is into the cells, where they are split into amino acids and join with the others to be released into the bloodstream. A few larger peptide molecules can escape the digestive process altogether and enter the bloodstream intact. Scientists believe these larger particles may act as hormones to regulate body functions and provide the body with information about the external environment. The larger molecules may also stimulate an immune response and thus play a role in food allergy.
The cells of the small intestine possess separate sites for absorbing different types of amino acids. Chemically similar amino acids compete for the same absorption sites. Consequently, when a person ingests a large dose of any single amino acid, that amino acid may limit absorption of others of its general type. The Consumer’s Guide () cautions against taking single amino acids as supplements partly for this reason.
Once amino acids are circulating in the bloodstream, they are carried to the liver, where they may be used or released into the blood to be taken up by other cells of the body. The cells can then link the amino acids together to build proteins that they keep for their own use or liberate them into lymph or blood for other uses. When necessary, the body’s cells can also use amino acids for energy.
Shorter terms:
The cells of the small intestine complete digestion, absorb amino acids and some larger peptides, and release them into the bloodstream for use by the body’s cells.
The body needs what to grow new cells and to replace old or damaged ones?
dietary amino acids
Protein is important in helping replace worn-out cells and internal cell structures. Each of the following cells lives for only these set amounts of days:
Red blood cells: 3-4 months and must be replaced by a new cell produced by the bone marrow
Cells of intestinal lining: constantly being replaced every 3 days
Skin cells: die and rub off often and new ones grow from underneath, like most cells –> cells –> constantly build and break down proteins while replacing their own internal working proteins
When cells reform because others are dying off and breaking down it is called this. Known as the entire process of breakdown, recover, and synthesis. Or the continuous breakdown and synthesis of body proteins involving the recycling of amino acids.
protein turnover
Roles of Body Proteins:
- gene expression
- Acid Base Balance
-Blood Clotting - Maintain fluid and electrolyte balance
- structure and movement: most body’s protein exists in muscle tissue. Allow the body to move. These proteins release amino acids when energy is low, as in starvation. Other protein is seen everywhere including tendons, cartilage, blood vessels, skin, teeth, scars, nails, hair, etc.
- Includes the works of Enzymes, Hormones, Antibodies
- Proteins specialize in transporting substances such as lipids, vitamins, minerals and oxygen, around the body. Examples: the protein hemoglobin within the red blood cells, which carries oxygen from the lungs to the tissues, and the lipoproteins, which transport lipids in the watery blood.
Metabolic workhouses. Acts as a catalyst (speeds up a chemical reaction that would happen anyway, but much more slowly). Thousands reside inside a single cell, and each one facilitates a specific chemical reaction.
enzymes