Clinical Genetics And Biochemistry Flashcards
(239 cards)
What is a transposon and how much of the human genome is made up of transposon repeats?
A mobile genetic element. 45% of human genome
Are transposons well or poorly conserved?
Poorly conserved
What are piRNAs?
Piwi protein interacting RNAs which control transposon activity. They are an example of non-coding RNA
What is heterochromatin and how much of the human genome is made up of it?
Tightly packed repetitive DNA with little or no active gene expression. Stains darkly with giemsa stain. Makes up 6.7% of the human genome.
What is euchromatin?
Loosely packed DNA with lots of active gene expression. Pale staining with giemsa.
What is chromatin?
DNA and histones
What makes up 3 - 4% of the human genome?
Non coding mRNA genes
Is heterochromatin well or poorly conserved?
Poorly conserved
What does non coding RNA do?
It regulates the expression of protein coding mRNA genes
Give examples of non-coding RNA
PiRNA and microRNA. PiRNA regulates transposon activity. MicroRNAs can silence protein coding mRNA or stop translation
What makes up 1.2% of the human genome?
Protein coding mRNA gene
Are RNA genes well or poorly conserved?
Well conserved
What are the three types of mutations?
Pathogenic
Non-pathogenic (polymorphism)
Conferring disease susceptibility (risk allele)
What is a polymorphism?
Non-pathogenic mutation
What are the 5 types of disease causing mutations in DNA and chromosomes?
SNPs (single nucleotide polymorphism aka point mutation)
Indels (small insertions or deletions)
CNV (copy number variants, large indels)
Microsatellites (dynamic) (expansion or contraction of tandemly repeated DNA)
Minisatellite (expansion or contraction of tandemly repeated DNA)
Which disease causing mutations are associated with repetitive DNA?
CNV
Microsatellites
Minisatellites
What is a SNP?
Single nucleotide polymorphism. It is pathogenic if it changes the open reading frame or is found in the promoter or regulatory region as this will change the amount of mRNA produced.
What is an indel?
Small insertions or deletions. SNP indel = 1 nucleotide inserted or deleted. Micro indel = more than 1 nucleotide inserted/deleted
What is a CNV?
Large indel, duplication or inversion
What are micro and mini satellites and which of them is dynamic?
Contractions or expansions of tandemly repeated DNA. Microsatellites are dynamic.
What is a Barr body?
Chromatin of an inactive X chromosome. It is seen as a blob of condensed chromatin at the edge of the nucleus of a cell in interphase.
What is a manifesting heterozygote?
A female carrier of an X linked recessive condition who shows some symptoms due to skewed X inactivation
What does hemizygous mean?
A boy with one affected X chromosome in an X linked recessive condition
What is a true homozygote?
Have inherited 2 copies of the same mutation (usually due to consanguineous mating)