Cloning Flashcards

(48 cards)

1
Q

Clone

A

an organism descended asexually from a single ancestor.

-sending the cells back.

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2
Q

SCNT

A

the transfer of a nucleus from a somatic cells into an oocyte from which the nucleus has been removed.

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3
Q

Reproductive cloning

A

the genetic duplication of an existing organism.

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4
Q

Therapeutic cloning

A

production of autologous undifferentiated cells for therapeutic uses.

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5
Q

Natural cloning

A

• identical (monozygotic) twins (Embryo expands and collapses and breaks (during the blastocyst stage) or during hatching)
• polyembryony (two or more embryos
developing from a single fertilized egg) (ie the zygote splits)

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6
Q

Artificial cloning

A

SCNT,

  • embryo splitting
  • nuclear transfer
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7
Q

polyembryony

A

more than one embryo from the same zygote

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8
Q

How many cells need to be present in the blasocyst to clone?

A

No more than 4.

-The cells become too small to separate and develop because they don’t have enough cytoplasm.

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9
Q

x

A

can clone from any stage. adult cells are more differentiated than embryonic cells.

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10
Q

embryo splitting

A

if you take a good quality embryo and cut it in 2, 50% of the time you will producing a calf
ET has a 60% of producing a calf.
-cut at the morula stage (dont need to worry about cutting the wrong place because the cell is not very differentiated)(ie having too much fetus not enough placenta etc).
-worry at the blastocyst stage

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11
Q

x

A

oocytes need to be competent - to support embryo development and cell reprogramming

  • no sperm is involved now : sperm induces the release of Ca to degrade MPF is not there, so this won’t happen.
  • culture the nuclear donor cells in vitro
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12
Q

x

A
  1. mature the oocyte

2. remove the chromatin via aspiration

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13
Q

problems of SCNT

A
  • Lower embryo development
  • Lower pregnancy rate after embryo transfer
  • Higher fetal mortality
  • Lower viability of cloned animals
  • Despite of the low efficiency, most cloned animals can grow, reproduce and produce normal offspring

However, the most of the ones that are born are normal and the ones that are not normal will produce normal offspring

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14
Q

probability of SCNT

A

less than 10%

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15
Q

Problems of SCNT cloned animals at the perinatal stage ie the ones that we have chosen to develop.

A
• Malformations
• Large (in ruminants) or small
(swine) offspring syndrome
• Respiratory insufficiency
• Hepatic congestion / insufficiency
• Immunodeficiency
• Multisystemic dysfunctions
more than 60% are capable to develop
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16
Q

Effect of abnormal cell cycle interactions on chromatin integrity in SCNT cloned embryos

A

fragmentation
condensation
multiple nuclei

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17
Q

which stage is the easiest to synchronize?

A

G1

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18
Q

What happens when you use metaphase 2 cells as donors?

A

MPF levels are high, so the chromatin will condense. then depending on the donor nucleus the ploidy may be abnormal if they are replicated right away.

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19
Q

what happens when you use interphase cells as donors?

A

MPF levels are low. the interaction between the cytoplasm and the nucleus is decreased. No abnormal ploidy because the chromatin did not condense

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20
Q

what do we want to maintain when we fuse for SCNT?

A
  • potential for reprogramming
  • chromatin integrity
  • embryonic ploidy
21
Q

Effects of cell cycle interactions between nuclear donor cells and host oocytes

A
  • Effects on chromatin integrity - incompatibilities between the cell cycle stage of nuclear donor cells and host oocytes may cause DNA damage
  • Effects on nuclear reprogramming – the cell cycle stage of host oocytes and donor cells affect nuclear reprogramming in SCNT embryos
  • Effects on DNA replication - cell cycle incompatibilities may cause DNA re-replication.
22
Q

trend between NT efficiency and differentiation of donor cells?

A

as cells become more differentiated Nuclear Transfer efficiency decreases

23
Q

What is the cause of the abnormal gene expression in cloned embryos ?

24
Q

what is the general trend of epigentic markers between more differentiated cells and less differentiated cells?

A

less differentiation have more Acetylation
more differentiation have more Methylation. The Methylation moves down the chain (attached to a lysine further down)
so to reprogram it we must remove CH4 and ad Ac

25
Genomic imprinting
• Situation where a gene is either expressed or not expressed in the embryo depending on which parent it is inherited from. maternal imprinting = paternal chromosome is expressed
26
which epigenetic markers promote gene expression/activation
(Ac, acetylation; H3K9Ac, acetylation of histone H3 at lysine 9; H3K4Me, methylation of histone 3 at lysine 4)
27
which epigenetic markers promote gene repression
DNA methylation, H3K9Me3 and H3K27Me
28
what does phosphorylation as an epigenetic marker do?
associated with chromatin condensation and DNA repair
29
are histone modifications reversible?
yes
30
Histone Acetylation
• Regulated by histone acetyltransferases (HAT) and histone deacetylases (HDAC) enzymes • Acetylation of histone promotes transcription • Amino group of histone lysine (+ charged) interacts with DNA (- charged) • Acetylation of the lysine neutralizes the + charge resulting in a less compact chromatin structure that is accessible to transcription factors • Histone acetylation can also regulate DNA replication, histone deposition, and DNA repair • Deacetylation causes chromatin compaction and silencing of expression
31
Histone Methylation
* Regulated by histone methyltransferases (HMT) and histone lysine demethylases (KDMs or lysine-specific demethylases - LSDs) * Lysine methylation is associated with inhibition of transcription (e.g., H3K9 and H3K27) but is also associated with activation of transcription (e.g. H3K4) * Lysines can be mono-, di- tri-methylated * Differential methylation at each lysine methylation site provides functional diversity (e.g., dimethylation at H3K4 is associated with both inactive and active genes, but trimethylation is always associated to active genes) * Arginine methylation is correlated with active transcription (facilitate acetylation).
32
DNA methylation
* Regulated by DNA methyltransferases (DNMTs) * Addition of a methyl group to DNA cytosines * Extensive methylation of cytosines in CpG sequences is used in vertebrates to keep genes in an inactive state.
33
what does DNA methylation regulate?
• Gene inactivation • X chromosome inactivation • Genomic imprinting • Cancer • Centromeric heterochromatin (tightly packed DNA) What occurs when a promoter is methylated or unmethylated?
34
How does genomic imprinting work?
- Meiosis and removal of imprinting | - Imprint is reestablished
35
what occurs with DNA methylation in the clone?
the fetal fibroblast has incorrect genomic imprinting. Some Usually somewhere inbetween. ie not enough, or too little
36
What do we want to do to reprogram the cells?
1. reduce DNA methylation 2. increase Ac 3. decrease histone methylation of H3K9 and H3K27 1a - treatment with 5- aza-20-deoxycytidine 2a - treatment with histone deacetylases inhibitors (HDACi) 3a - treatment of donor cells with histone methyltransferase inhibitors or activation of specific histone demethylases
37
which genes should not be reprogrammed before development?
imprinted genes
38
Is it better to treat the cell for reprogramming before or after NT?
after was much more effective
39
treatment with TSA - inhibitor of acetyl demethylase
- need to provide treatment in the correct dose for the correct amount of time. - Example the 50/20 and 500/10 dose/time were not good and the 50/10 was - treat after NT -when used on more differentiated cells, the results were better. there was no effect on undifferentiated cells
40
How long is the typical TSA treatment?
pigs - 10h | cows - 15-20h
41
How do HDAC enhance reprogramming in SCNT cells?
* Chromatin remodelling • Histone modification * DNA replication * Transcriptional activity • DNA-damage repair
42
what is Xist and how does it relate to SCNT?
- X inactivation and reactivation play a role in cell reprogramming - It is inactivated via the gene Xist. - IVF is the control - Xist is expressed more in the clones. Use probe to stain chromosome (here to see where Xist was expressed) - In the female we want to inactivate an X. Males should not inactivate the X chromosome and not express Xist in the morula and blastulist stage. - Female had improper inactivation and the male had unwanted partial inactivation - Deleted Xist: increased efficiency of cloning (not the right approach tho)
43
Instead of deleting the Xist gene, how can we regulate gene expression relating to X chromosome inactivation?
- use of micro RNAs- noncoding RNA, very small, similar to Xist, regulate other RNAs, ie can bind to mRNA and cause it to degrade. - Design a microRNA specific to degrade Xist mRNA. This will cause the manipulation of a gene without touching the DNA.
44
Can DNA methylation be combined with Ac?
yes, only in some species, Epigenetics really depends on the species
45
Suv39
- adds Me | - histone methyltransferase H3K9Me
46
Kdm4d
- histone demethylase H3K9Me3 | - inject mRNA encoding the protein for demethylase and me was removed = good development
47
in the monkey experiment how did they successfully reprogram the cell?
produced embryos exposed to combined TSA, inject mRNA to promote demethylation of H3K9me3
48
does reprogramming affect all species the same?
no. it depends on their rate of development. It is very important for animals with a slower gestation, but not as important for animals with a longer gestation period.