Concept 1 + 2 - What is Life? + Molecules of Life Flashcards

(90 cards)

1
Q

How do we define life? 3 parts

A

What it consists of
1) Common set of elements (eg. proteins, carbos, fatty acids, nucleic acids)
2) Genetic information
3) Cells

What they do
1) Grow + change
2) Respond to the environment
//
3) Use molecules + make new molecules (eg.absorption)
4) Extract energy to use it (eg. photosynthesis - light energy -> chemical energy)

Overall
1) Evolve, exist in populations

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2
Q

Metabolism

A

Extracting energy from the environment and converting it to useable forms by the organisms

eg. respiration, photosynthesis

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3
Q

Why is information transmission, energy transfer, evolution basic to life?

A

1) Information transmission = organisms sending + receiving info:
- Within their own bodies
- With other organisms
- With the environment

2) Transfer energy = going from one form of energy to another
This is to do work → perform LIFE FUNCTION

3) Evolution = gradual change through natural selection
ANSWERING THE Q: ensures survival as the environment changes

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4
Q

bacteria has 3000 genes, humans have 20,000 genes, why do we have the same 1,000 genes?

A

Concept = the GENES evolved here, not the organism

  • Eukaryotic cells have a prokaryotic ancestor
  • The 1000 genes ITSELF evolved
  • BUT still were CONSERVED during evolution
  • Conservation occurred likely as they are responsible for core functions in ALL CELLS
    Eg. transcription + translation
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5
Q

Are viruses considered alive? YES

A

What it consists of
1) Contain nucleic acids

What they do
2) Can replicate

Overall
3) Evolve, adapt to the environment

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6
Q

Are viruses considered alive? NO 3 parts

A

What it consists of
1) DO NOT have cells, no organelles

What they do
1) Can’t do INDEPENDENT replication (need a HOST CELL)
//
2) Cannot extract energy (eg. respire)

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7
Q

Key features of cells 5 (3 parts)

A

Origin
1) All cells come from preexisting cells (eg. mutation)

Structure
2) Molecular + structural function of cells define their function
3) Cells are bounded by a membrane - compartmentalisation
4) Can form organised units with more complex function

Function
5) Communicate with other cells

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8
Q

why are information transmission, energy transfer and evolution considered basic to life?

A
  • Information transmission
    -> transmitting genetic information like DNA to offspring through REPRODUCTION
  • Energy transfer
    -> converting external energy like sunlight into usable forms to do work -> sustains biological processes
  • Evolution
    -> change in inherited characteristics of a population over time, driven by natural selection
  • Natural selection
    -> process where individuals with advantageous traits survive and reproduce more successfully and pass this to their offspring, leading to a gradual increase in the frequency of these traits
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9
Q

Cell Theory 3

A

Origin
1) All cells come from preexisting cells
(ie. mitosis)
2) Modern cells evolved from a common ancestor
3) All living organisms are made up of cells

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10
Q

evidence that euk and prok share a common ancestor?

A
  • Same genetic code (ie. DNA, RNA)
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11
Q

How are living organisms similar?

A
  • Same genetic code (ie. codons code for the same amino acids)
  • Same chemical composition (ie. all proteins are made up of amino acids)
  • Same cellular structure
    (SMALL TO BIG)
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12
Q

What do similarities among living organisms indicate?

A
  • All life on Earth has a COMMONA ANCESTOR (arnd 4 billion years ago)
  • Became diverse through evolution + natural selection (change of genetic makeup)
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13
Q

What created life on Earth - conditions? 2

A

1) Assumes early conditions on Earth = primordial soup AND reducing environment
- Soup = contains various chemicals needed for the building blocks of life
- Reducing environment = lack of o2 around, chemicals ready to share electrons
- -80 degrees celsius, 30 years

2) Extra-terrestrial origin
- Panspermia = theory that life originated elsewhere in the universe
- A comet was brought to earth by meteorites

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14
Q

What created life on Earth - evidence? 2

A

1) Primordial soup + reducing environment
- MILLER-UREY experiment
- -80 degrees celsius over 30 years in TEST TUBE
- Found DNA + RNA, bases 20 amino acids, 3 and 6 carbon sugars
- fatty acids, NAD, Vitamin B6, Organic acids

2) Extra-terrestrial life
- Meteorite sample analsed
- Amino acids, DNA bases, sugars

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15
Q

How did miller’s experiments support the idea that physical and chemical laws govern the processes of life at life’s origins? 5 MARKS

A

Q by chemical laws means that life started from basic molecules + evolved from there - THE BEGINNING OF LIFE!

EXPERIMENT + RESULTS
- Experiment produced molecules from each category (carbos, lipids, proteins, nucleic acids)
-
Proves that CHEMICAL EVOLUTION of biomolecules occurred

WHY IS SO SIGNIFICANT?
- Supports idea compared to if only 1 or 2 categories of molecules had been formed

LIMITATIONS
- Can’t be used to draw conclusions about what actually happened

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16
Q

What created life on Earth - how does evidence point to life?

A

CHEMICAL EVOLUTION

  • formation of simple molecules led to the formation of life forms!
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17
Q

When did life arise on Earth? - ORDER OF EVENTS 9

A

1) Formation of Earth (too boiling hot)
2) First ocean - appearance of liquid water
3) Origin of life - life arose SOON after water!! (since h2o is so important!)

4) Photosynthesis
5) First colonial cyanobacteria
6) First eukaryotes

7) First photosynthetic eukaryotes (PLANT)
8) First multicellular eukaryotes (ANIMAL)
9) First fossils of multicelullar animals

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18
Q

When did life begin? Evidence?

A
  • Earth began 4.5 billion years ago
  • But LIFE began around 3.5-3.7 billion years ago
    -> Stromatolites = cyanobacteria fossilisation
    -> Pillow basalt = trap liquid water
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19
Q

Cambrian Explosion

A
  • Most of the time period was cyanobacteria + single celled eukaryotes present
  • THEN…rapid diversification of life 541 million years ago (lots of multicellular species)
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20
Q

Why are there such large time gaps between bacteria, unicellular eukaryotes, terrestrial animals?

A

TIP
- Think how did a prokaryote become an eukaryote?

1) Mutation -> evolution
- mutations are fast
- but it takes a long time for them to SHOW and cause evolution

2) Long time for Invagination of membrane to form a nucleus

3) Long time for endosymbiosis

4) Ozone layer to protect from UV
- took a long time to form

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21
Q

Stromatolites - what are they, conditions to grow

A
  • Layers of limestone
  • Grow in hypersaline (super salty) water
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22
Q

Stromatolites - function?

A
  • They can trap water -> therefore cyanobacteria inside their layers
  • So allows for the fossilisation of bacteria! (ie. trace of dead organism)
  • Assume cyanobacteria was there from when it was alive - around 3.7b years ago!
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23
Q

NASA scientists are looking for stromatolite fossils on Mars. Explain why they are looking for stromatolites 2 marks

A

1) Stromatolites have trapped water containing cyanobacteria, dating back 3.5 billion years -> earliest
evidence of life on Earth.
2) Mars may have had water in its past, so stromatolites might hold trapped cyanobacteria/microbes that
are Martian.

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24
Q

The scientist’s notes suggest this organism is an autotroph (diagram shows a cell w/ a mitochondria). Assuming that energy production is the same on
Mars, as it is on Earth, justify whether you agree with this statement 2 marks

A

1) Scientist’s statement not true because cell does not have a CHLOROPLAST or similar. (1 mark)
2) Cell would not be able to make its own glucose/ needs alternative source of energy

SO…2 KEY IDEAS TO MENTION
1) Chloroplast = autotroph
2) Source of energy = glucose

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25
Features of water + reason 5
1) High specific heat capacity 2) High melting + boiling point 3) High heat of vaporisation // 4) Cohesion 5) Adhesion // 6) Universal solvent --> all due to strong HYDROGEN BONDS between water MOLECULES that need to be DISRUPTED
26
High specific heat capacity vs high boiling point vs high heat of vaporisation
- High specific heat capacity = amount of ENERGY to raise 1g of water by 1 degree (ONLY A SMALL AMOUNT, RAISING TEMP) - High heat of vaporisation = ENERGY (J) needed for liquid to turn into gas - High boiling point = TEMPERATURE at which liquid turns into gas (Boiling point is a RESULT of vaporisation)
27
Cohesion vs Adhesion
ADHESION = THINK OF GLUE + PAPER Cohesion = hydrogen bonding between H2O molecules Adhesion = attraction of water to other molecules
28
Boiling point + Melting point of water
- 0 degrees = melting point - 100 degrees = boiling point -> High compared to other similar covalent molecules -> Others like H2S are a gas at room temp, whereas H2O is mostly in liquid form on Earth
29
Features of water - why is it a strong indicator of life? 5
1) High specific heat capacity = Lakes don't dry up and boil, survival of aquatic organisms (alongside vaporisation) 2) High melting + boiling point = Water is mostly in liquid form on Earth -> medium for bacterium to move through 3) High heat of vaporisation = Cooling for mammalian systems = Sweat ABSORBS larger amount of heat energy to EVAPORATE, causing cooling 4) Cohesion = Plants = water can flow from the roots to the leaves in a tree = Surface tension = creates a layer on water, spiders can walk on water 5) Adhesion = Plants = water transport, h2o molecules stick to xylem vessels in plants 6) Universal solvent = Salts and sugars = soluble -> transport in the blood = Lipids in membranes = insoluble
30
Hydrogen bonding in water's 3 different states PIC
SOLID - Yes - Lattice, strong hydrogen bonds LIQUID - Yes - Hydrogen bonds constantly made +broken as h2o molecules move GAS - No - Can't form, water molecules are spread out, moving quickly
31
Hydrogen bonding between water molecules - oxygen partial charge
In 1 water molecule, each oxygen atom will have TWO partial negative charges - this is from the 2 lone pairs BUT for dipole-dipole interactions with other molecules, we consider oxygen to only have ONE partial negative charge
32
How does water molecules form hydrogen bonds?
- Oxygen is more electronegative than hydrogen - The oxygen atom in H2O pulls electrons towards itself, forming TWO partial negative charges on the oxygen atom ( for 2 lone pairs!!) - One partial positive charge on each hydrogen atom - ATOMS in neighbouring water molecules with opposite partial charges will be attracted to each other - Form a hydrogen bond
33
What happens when salt is added to water?
BREAKS APART into its individual ions and DISSOLVES
34
What happens when salt is added to water- WHY?
SALT = LATTICE OF IONS!!! - Water molecules cluster around the individual ions: - Negative/positive Ions + partial positive H/partial negative O form an interaction - ion-dipole interaction stronger than ionic bonds - Pull individual ions out of the lattice, move apart - Ionic bonds disrupted - Left with individual ions floating around
35
What happens when a polar molecule eg. sucrose is added to water?
SUCROSE = Lattice of sucrose molecules - sucrose molecules held together by hydrogen bonds (have OH groups) - Water molecules form new hydrogen bonds with individual sucrose molecules (specifically the OH) - water-sucrose hydrogen bonds stronger than sucrose-sucrose hydrogen bond s - Pull them out of the lattice, disrupt their hydrogen bonds - BUT none of their atom-atom bonds (covalent) are broken or disrupted - Only hydrogen bonds are affected HENCE WILL NOT BREAK APART INTO SMALLER PIECES!! BUT WILL DISSOLVE
36
Substances, when do they dissolve in water?
- solute-solvent forces stronger than solute-solute forces - allows solvent to pull apart the solute!
37
Nonpolar substances in water
WON'T DISSOLVE - non-polar form strong dispersion forces due to long C chain - not as strong dispersion forces w/ water!
38
Lipids + water (polar/non-polar) - why do they not mix?
- water forms strong hydrogen bonds - much stronge than lipid's dispersion forces - energetically unfavourable to break these strong forces, therefore don't mix, as hydrogen bonds form a network - DIFF TO DISSOLVING IS THAT HERE WE COMPARE STRENGTH OF INDIVIDUAL SOLVENT AND SOLUTE
39
Polar molecules vs Nonpolar molecules vs Ionic substances in water PIC
POLAR MOLECULES - Attracted to each other - Will form dipole-dipole forces with each other - H is partial positive, O is partial negative (but has 2 lone pairs which can form 2 hydrogen bonds) NONPOLAR MOLECULES - Not attracted to each other - Nonpolar molecules will clump together, water molecules will be outside - Non polar molecules disrupt water's hydrogen bonding network, so they are pushed together AND - Non polar molecules eg. methane have a stronger attraction for each other than water (dispersion forces) IONIC SUBSTANCES - Most are soluble!! - Positive ion with partial positive negative etc. - Water will therefore tear off individual ions from the ionic lattice -> ion s will later disperse homogeneously through water
40
Hydrophillic interaction vs Hydrophobic interaction
INTERACTION OF HYDROPHILLIC/HYDROPHOBIC MOLECULES W/ WATER Hydrophillic= - Ions + polar molecules = hydrophillic molecules - Attracted to water via dipole-dipole, hydrogen bonding or ion-dipole forces Hydrophobic= - Non polar molecules = hydrophobic - They stick together in water - do not associate
41
pH of water?
- Neutral (pH7) at 25 degrees BUT also a.... - Weak acid (donate a H+) - Weak base (accept a H+)
42
Why is pH important?
- impacts rates of biological reactions - changes 3D structure of biological molecules -> impacts function SO... - Compartmentalisation - eg. separate different parts of the body which work at diff optimum pH
43
Major elements in life? 4
H,C,O,N - present as ions/ coordinating atoms in large organic complexes - present in biological molecules - carbon is the primary component!!
44
Carbon - how many bonds
- 4 covalent bonds in total -> 4 single bonds -> 2 single, 1 double bonds -> 2 double bonds -> 1 single, 1 triple bond (carbon has 4 valence electrons, need 8 electrons in its outer shell)
45
Carbohydrates function 3
MONOSACCHARIDE 1) Source of chemical energy = glucose for respiration POLYSACCHARIDE 2) Structural components = eg. cellulose in cell walls BASIC STRUCTURE 3) Carbon skeletons can be rearranged to form new molecules = ie. simple carbon structure can be used to make amino acids, nucleotides etc.
46
What are carbohydrates general formula? Glucose?
(CH2O)n eg. glucose = c6h12o6
47
Glycogen function? 2
STORE GLUCOSE AS GLYCOGEN - why? 1) Energy storage in animals, fungi, bacteria - chain of glucose so... - can be hydrolysed into glucose - release stored energy 2) Prevents cells from swelling - glycogen insoluble in water - PREVENT: lots of glucose in water = low WP in cells, so lots of energy wasted removing water from cells
48
Cellulose function? 2
1) Easily degraded by chemicals - chains of glucose so... - easily broken down to release glucose for energy!! (ENERGY STORAGE) 2) Stable - BETA glycosidic bonds
49
Why is branching present in polysaccharides?
Polysaccharides = amylopectin, glycogen - Branching allos rapid release of glucose
50
Alpha + beta glucose - why ringed?
- Ring form is more stable in water
51
Which polysaccharide is the most stable?
- Cellulose
52
Types of RNA 3
1) mRNA - messenger ribonucleic acid 2) tRNA - transfer ribonucleic acid 3) rRNA - ribosomal ribonucleic acid
53
2 types of genes in DNA
- Non-coding genes in DNA = template (3' end to 5' end) - Coding genes in DNA (5' end to 3' end) --> transcription, mRNA is made using coding strand 5' to 3' (copied pasted, except all T's changed to U's)
54
Functions of a protein 5
1) Structural (keratin in hair) 2) Hormones 3) Contractile (help muscles contract) 4) Enzymes 5) Transport (eg. membrane) **CYTOSKELETON - made up of proteins like actin, tubulin, fibrous proteins 5) Defence (antibodies)
55
primary, secondary, tertiary structure of protein - what affects what?
- Tertiary structure is affected by primary, secondary - BUT primary/secondary will not be affected by tertiary (HIGHER AFFECTED BY LOWER, LOWER NOT AFFECTED BY HIGHER)
56
HOW IS PROTEIN STRUCTURE RELATED TO ITS FUNCTION?
- Proteins have a HIGHLY SPECIFIC function - Function is dependent on its SHAPE + FOLDING - A protein’s 3D shape is dependent ONLY on its TERTIARY STRUCTURE -> Example = an enzyme’s active site is a tertiary structure. This active site is specific to a substrate
57
PRIMARY → SECONDARY → TERTIARY RELATIONSHIP
PRIMARY = sequence of amino acids in a polypeptide chain SECONDARY = ON THE SAME CHAIN, - hydrogen bonds between carboxyl + amine groups → alpha helix + beta sheets formed TERTIARY = SECONDARY STRUCTURES folded into tertiary structure (still within ONE CHAIN) = complex 3D shape - forces between R groups - ONLY tertiary structure will affect 3D protein shape - Protein SHAPE impacts protein FUNCTION (eg. enzyme active site, tertiary structure)
58
Tertiary structure - what types of forces between R groups?
- Hydrogen bonding - Dipole-dipole - Ion-dipole - Ionic - Disulfide bridges (covalent bonds) S-S - Dispersion forces
59
where is protein, nucleic acid, carbohydrates, lipids found in a cell?
Proteins - cytoskeleton - enzymes Nucleic acids - chromosomes, nucleus - mitochondria, chloroplasts Lipids - cell membrane (phospholipids) - storage vacuoles Carbos - cell walls (cellulose) - storage vacuoles
60
what is nucleic acid, carbohydrates, lipids function?
Nucleic Acids - DNA: Stores genetic information - RNA: Helps make proteins Carbohydrates (think glucose) - Provide energy for the body - Store energy for later use Lipids - Store energy for long-term use - Make up cell membranes - Insulate and protect organs
61
How does amino acid structure allow for protein to perform so many functions?
- diff (R groups) - These side chains can be nonpolar, positively or negatively charged, or polar but uncharged - form diff interactions - Primary structure flexibility: diff sequence of amino acids - diff interactions = diff tertiary structure = diff FOLDING + 3D SHAPE = diff function
62
How is proteins (eg. enzymes) specific to other molecules 2
1) Shape - must have a general 'fit' into each other 2) Chemistry - surface R groups on molecule + enzyme interact w/ each other
63
What is protein denaturation
What is it? - when the secondary + tertiary STRUCTURE of a protein is changed - due to disrupted side chains, unfolding of protein, breaking h2 bonds of the structure etc.
64
How would pH, temp, addition of polar/nonpolar molecule cause denaturation of a protein - general
DENATURATION - Change in 3d shape - change in tertiary structure - Looking at changes in R GROUPS - NOT carboxyl or amine - although polar, all are involved in peptide bond except the ends
65
How would pH, temp, addition of polar/nonpolar molecule cause denaturation of a protein - temp
- increase kinetic energy - R groups move randomly - IMF disrupted - change in folding
66
How would pH, temp, addition of polar/nonpolar molecule cause denaturation of a protein - pH
- change in H+ conc - IONIC R groups will be affected - will form ionic bonds with H+, breaking R group interactions AND - R groups like carboxyl will become COOH will become COO- due to Le chateleir??
67
How would pH, temp, addition of polar/nonpolar molecule cause denaturation of a protein - polar/nonpolar
POLAR - dipole-dipole +hydrogen bonds between R GROUPS disrupted - R groups will form attractions with polar molecules instead NONPOLAR - same, dispersion forces between R GROUPS
68
Protein denaturation - conditions, explanation
1) High temp - disrupt hydrogen bonding etc. , excited and move apart 2) pH changes - alter charges on the r groups of acidic and basic amino acids 3) high concentration of polar molecules - protein is meant to have interactions with its substrate - but now making dipole dipole and hydrogen bonds with other molecules 4) high concentration of non-polar molecules - hydrophobic molecules interact with other nonpolar substances, causing protein to change shape
69
explain why the structure of a protein and its function are intimiately interconnected. drescribe the forces that hold proteins in their functional conformation
- hydrogen bonds, dispersion forces, dipole-dipole, ionic 1) R group interactions impact folding, therefore 3D shape of protein -> shape impacts function - general fit w/ substrate 2) Specific R group positioning on surface of protein enzyme will INTERACT w/ substrate 3)
70
Properties of a lipid - solubility
1) Insoluble in water - lipids (so large) form strong dispersion forces with each other - form stronger interaction btwn lipids vs lipids + water, so clump together 2) Soluble in organic solvents
71
Other properties of lipids
1) Composed mainly of C,H, and O 2) Different from carbos due to smaller proportion of oxygen 3) May contain other elements (eg. phosphorus, nitrogen)
72
Saturated vs unsaturated fatty acids
SATURATED = lots of hydrogens So...all carbons on main chain has a SINGLE BOND UNSATURATED = not many hydrogens So...carbons on main chain has a DOUBLE BOND
73
Saturated vs unsaturated fatty acids - difference in properties - solid or liquid at room temp? PIC
UNSATURATED = double bonds are inflexible, causes the structure to BEND SO...tends to be oil at room temp - unable to pack closely and enter the solid phase SATURATED = single bonds can rotate easily SO...typically fats and solids
74
Uses of lipids/fats
1) Energy storage - contains lots of energy which can be broken down later for work - stores much more than glucose - long carbon chain! This can be RELEASED slowly for growth 2) Insulate heat + increase buoyancy - eg. blubber in whales
75
Uses of proteins
- Building cells, differentiation and growth -> Source of amino acids to make ITS OWN cellular proteins
76
Cholesterol uses 2
1) Important part of the cell membrane 2) Precursor for chemical messengers + vitamins
77
2 structures phospholipids form
IF AIR + WATER - membrane SURROUNDED BY WATER - micelle (ball)
78
Why are functional groups important?
- impacts polarity of the molecule - therefore impacts how the molecule interacts w/ other molecules!!
79
Biological polymers definition
- long chains of repeating subunits (monomers)
80
glycosidic bond same as?
Ester bond
81
Polynucleotide strands
- nucleic acid = polymer, like DNA - monomer = nucleotide - monomers in one strand = polynucleotide strand STRANDS DO NOT BRANCH
82
Zwitter ion
- amino acid that is neutral (contain equal no. of positive and negative charge) - from carboxyl and nh2 amine group
83
Peptide bond - other name
- amide bond
84
Bonds in a tertiary structure 3
- BONDING BETWEEN THE R GROUPS 1) Hydrogen bonds 2) Ionic bonds - between r groups with positive and negative charges 3) Disulphide bridges (covalent bond) - between 2 cystine amino acids (these contain sulphur) - 2 sulphurs come together to form a covalent bond
85
Phospholipid - what type of compound is it?
Amphipatic compound
86
electronegativity definition
ability of an atom to attract a bonded pair of electrons towards itself in a covalent bond
87
What is the role that hydrogen bonding plays in stabilising glycogen + cellulose? 2 marks
1) WHERE DOES HYDROGEN BONDING OCCUR? - Hydrogen bonding occurs between hydroxyl groups of alpha and beta glucose monomers (any carbon with OH group) 2) DIFF STRUCTURES FORMED - In Glycogen, hydrogen bonding give it its structure (helical in this case). - Whereas hydrogen bonding between adjacent molecules in cellulose result in bundles or fibers.
88
role cyanobacteria played in creating conditions that allowed for the evolution of terrestrial life.
1) cyanobacteria are photosynthetic and this increased oxygen levels in the atmosphere. 2) increased oxygen in the atmosphere led to the production of ozone. Ozone blocks UV radiation from the sun, thus shielding the land. This allowed life to colonise land without being irradiated by intense UV.
89
three pieces of evidence that supported the statement that mitochondria became part of the eukaryotic cell through primary endosymbiosis.
(1) like most prokaryotes, mitochondria has circular genomes; (2) mitochondria have their own ribosomes that are more bacterial-like than those in the cytosol (3) mitochondrial genomes show common ancestry with purple bacteria; (4) mitochondria use FtsZ-based contractile rings for division like prokaryotes; and others.
90
You were told the stain colours negatively charged molecules blue/purple - WHAT DOES THIS REPRESENT?
The simplest explanation is that the purple stained organelles are nuclei because DNA is negatively charged due to its phosphate backbone and the light purple cytoplasmic staining is RNA and DNA in mitochondria. Red blood cells don’t have nuclei so are not stained purple.