Disease Models for Comparative Anatomy Flashcards
(106 cards)
What do you know about the scientific classification of Zebrafish?
Danio rerio
Tropical freshwater fish belonging to the minnow family (Cyprinidae)
Phylum: Chordata
Superclass: Osteichthyes
Class: Actinopterygii
Order: Cyprinidae
Genus: Danio
Species: D. rerio
What are chordates?
Animals possessing a notochord, a post anal tail for at least some period of their life cycles, including vertebrates
What are Osteichthyes?
Bony fish as opposed to Chondrichthyes - cartilaginous fish (sharks, rays)
What are cypriniformes?
Only a dorsal fin on their back, lack of teeth in the mouth. Examples: Carps - Koi and Goldfish and minnows - Cyprinidae
What are minnows?
A general term used to refer to small freshwater and saltwater fish, especially those used as fishing bait.
More specifically, it refers to the freshwater fish of the Cyprinidae family
What do male and female zebrafish look like?
Male has gold stripes between blue stripes
Females have a larger, whitish belly and silver stripes instead of gold ones
How do zebrafish live in the wild?
Observed in small shoals for 2-30 individuals that exhibit diurnal activity
What are stripes in zebrafish?
A shoaling cue in Danio fish
They group preferentially with fish with similar stripe phenotypes to their own
- Like friends who look like them
- Good for behaviour analysis
What is the distribution of zebrafish?
Indigenous to South Asia, across parts of India, Bangladesh, Nepal, Myanmar and Pakistan
What environment do zebrafish prefer?
Still or slow moving water
Slightly alkaline water (pH~8)
Water of relatively high clarity
Helps for in captivity
What do we know about zebrafish reproduction?
Generation time = 3 months ie time for a fish to be mature and able to reproduce
Ovulation and spawning triggered by presence of a male, this occurs around every 2 to 3 days
In normal conditions, each clutch can reach around 100 eggs.
After first few cell divisions if no sperm around, development stops and egg becomes opaque
Fertilised eggs are transparent, and the embryo can be kept transparent by the addition of PTU in the water
What is the lifespan of the zebrafish?
In the lab, maximal recorded lifespan = 5.5 years, average of 3.5 years
What are the stages of the zebra life cycle?
0-72 hrs post fertilisation: Embryos (no need for Home Office Personal licence up to 5dpf)
72 hours to 13 days post fertilisation: Early Larvae (post-hatching)
14 days to 29 days post-fertilisation: Mid Larvae
30 days to 3 or 4 months:
Juveniles
When sexually mature: Adults
What is the diet of zebrafish?
Omnivorous
Zooplankton and insects
Capable of independent feeding by 5 days - necessary as yolk supplies are largely depleted
What do you know about the thermoregulation of zebrafish?
Recommended maintenance temp = 28.5 degrees celsius
Gradual drop in temp to 22-23 is acceptable in emergencies
What are the embryonic stages of development of zebrafish?
After fertilisation, the basic body plan develops within 24 hours
(Equivalent to about 9 days in mice)
Newly hatched ‘early’ larvae (3dpf) are largely inactive lying immobile on the bottom with potential occasional tail flicks
On, or just before day 5, larvae inflate gas bladders by swimming up and gulping air. They are then capable of continuous swimming and maintaining their position
What is aquatic surface respiration (ASR)?
When ventilation of the gills at the air-water interface improves O2 uptake and survival
What can we use transgenic zebrafish for?
To study cardiovascular disease
What are some methods of producing transgenic zebrafish?
Chemical mutagenesis
- Permanent
Morpholino oligonucleotides
- Transient
Plasmids
- Permanent but mosaic and not transmitted to offspring
CRISPR/Cas9
- Permanent
How can we use transgenic zebrafish to study cardiovascular disease?
Inject 1-cell embryo
Analyse the morphology and phenotype
What are some examples of useful transgenic zebrafish for cardiovascular studies?
Myocardium
- Tg(cmlc2:eGFP)
- Tg(vmcc:eGFP)
Epicardium
- Tg(tcf21:DsRed)
- Tg(wt1b:eGFP)
- Tg(tbx18:eGFP)
Endothelium
- Tg(fli1a:GFP)
- Tg(cdh5:GFP) endothelial cells (arteries, veins and lymphatics, endocardium)
- Tg(Karl:GFP) arteries
Red blood cells
- Tg(gata1:dsRed)
Macrophages
- Tg(mpeg:GFP)
- Tg(mfap4:Turq2)
Several express fluorescent proteins for markers
What do morpholino oligos do?
Advanced tools for blocking sites on RNA to obstruct cellular processes
Specifically binds to its selected target site to block access of cell components to that target site
What is CRISPR-Cas9 gene editing?
Cas9 endonuclease is directed to the region of interest in the genome by a single-guide RNA (sgRNA)
Enzymatic activity of Cas9 cleaves both strands of genomic DNA, resulting in a double-strand break (DSB)
If this DSB is repaired by non-homologous end-joining (NHEJ) its error prone nature leads to insertion/deletion mutations which can produce a functional gene knockout
If a DNA template is also introduced to the cell, homologous recombination (HR) can incorporate the desired sequence into the genome
What are the pros of zebrafish as a model of cardiovascular disease?
Complete genome available
Short reproduction times
Transparent embryo