Exam 4 Flashcards
(173 cards)
What is the replication cycle of HIV?
- A mature extracellular virion attaches/fuses with the cell (just needs to have a CD4)
- Penetration & uncoating - Nucleocapsid enters the cell
- Reverse transcription - RT makes copy strand, then RNA is degraded, DNA is synthesized
- Integration - DNA attempts to integrate into the nucleus
- Transcription & translation - viral RNA and proteins are made in nucleus
- Budding and release - proteases allow infection HIV to form & infect more cells
What is a genetic barrier to resistance? Which antiretroviral drugs have high vs. low genetic barriers?
NRTIs have a low genetic barrier to resistance, meaning mutations are pretty common due to their structure/mechanism. Integrase inhibitors also have a low barrier.
High genetic barrier means that the mutations that cause resistance are pretty hard to develop.
What are the human or viral targets, reasons the class is selective for the virus/viral cells, affected step in viral cycle, and MOA of these drugs: entry/fusion inhibitors, nucleoside reverse transcriptase inhibitors, non-nucleoside reverse transcriptase inhibitors
Entry/fusion inhibitors - enfuvirtide binds to HIV GP41 & blocks GP41 conformational change that is needed for fusion, maraviroc binds to human CCR5 and blocks GP120 binding. Overall this blocks the first step of the cycle by inhibiting the virus to enter the cell.
NRTIs - RTs can do these 3 things: (1) RNA dependent DNA polymerase, (2) Ribonuclease H, (3) DNA dependent DNA polymerase. RT copies plus-strand RNA and produces minus-strand RNA. It then degrades the RNA template and synthesizes plus-strand DNA from the minus-strand DNA template. NRTIs have 2 effects: (1) compete w/ nucleotides for reverse transcriptase, (2) DNA chain terminator
NNRTIs - These block RNA and DNA-dependent DNA polymerase activities by binding to an allosteric site on the reverse transcriptase.
What are the targets and mechanisms by which maraviroc and enfuvirtide block HIV entry?
Maraviroc - Selective CCR5 antagonist that binds CCR5 and causes a conformational change that prevents gp120 binding. Has no effect on cell surface levels of CCR5, so there’s little/no side effects. Can only be used in pts with HIV strains that utilize CCR5. Potentially can select for viral mutants that bind to CXCR4 (bad).
Enfuviritide - Only active against HIV-1. Causes a conformational change that inhibits the necessary binding insertion, thus inhibiting viral fusion. Mutations are easily acquired
How are nucleoside RT inhibitors activated metabolically before enzyme inhibition can occur?
The DNA must be tri-phosphorylated in order for viral RT to do it’s functions.
All of the nucleoside RT inhibitors are prodrugs that need to be activated by cellular kinases to the triphosphate form. (These enzymes are thymidine kinase, thymidylate kinase, and NDP kinase)
What are the key structural differences between nucleoside analogues and the normal nucleosides used by reverse transcriptase?
NRTIs look almost exactly like nucleotides, but they don’t have an OH group that would be needed to make a new bond in the DNA.
How can you describe the structure on tenofovir, emtricitabine, and zidovudine?
tenofovir - deoxyadenosine analog, but acyclic
emtricitabine - deoxycytidine analog with no OH, does have a sulfur in the ring and a fluorine at the top
zidovudine -deoxythymidine analog with N=N=N
What are the differences in structure and activation between tenofovir and the other nucleoside RT inhibitors? How does this contribute to the longer half-life of tenofovir?
Azidothymidine - instead of OH on normal deoxythymidine, it has an azole group (three N)
Stavudine - instead of OH on normal deoxythymidine, it has no OH, it does have a double bond in the ring structure
Tenofovir - deoxyadenosine analog, but acyclic; activated by cellular enzymes; already monophosphorylated
- Not sure how this contributes to a longer half-life of tenofovir
What are the differences in activation pathways for tenofovir disoproxil fumarate and tenofovir alafenamide? What are the effects of these differences on dosage, plasma and intracellular tenofovir concentrations, and tenofovir side effects?
tenofovir disoproxil fumarate (TDF) - Converted to tenofovir (TFV) by cellular esterases, then two more phosphorylations need to occur.
- Long intracellular half life
- plasma esterases (not cellular) can activate TDF -> TFV, which can cause kidney toxicity & reduction in bone mineral density
tenofovir alafenamide - activated by a different pathway than TDF. Plasma esterases don’t metabolize TAF.
- Lower concentrations of TFV -> less toxicity
- Increased accumulation of lymphocytes
- May be better at targeting HIV!
- Less side effects
- High lipid levels than TDF
Why are tenofovir and emtracitabine preferred NRTI for initial antiretroviral therapy? (5)
TFV has a long intracellular half-life
once daily dosing
equivalent to other NRTI combinations w/ less toxic effects
less fat maldistribution
different resistant mutation profiles
What hypersensitivity reaction can be caused by abacavir? What is the role of the HLA-B*5701 polymorphism?
Black Box Warning: hypersensitivity reaction -> can be fatal
- symptoms: malaise, dizziness, headache, GI disturbances
*must d/c immediately if symptoms develop
It’s highly associated with the HLA-B*5701 allele, so testing for this is recommended before initiating treatment with abacavir.
How can HIV become resistant to the RT inhibitors (discriminatory vs. excision mutations)? Does resistance to one RT inhibitor confer resistance to all drugs in this class? How can combinations of RT inhibitors be used to manage resistance?
HIV polymerase is error prone and there’s large amounts of virus present. The rate at which mutations appear is inversely related to the serum drug concentration.
- Discriminatory mutations: selectively impair the ability of reverse transcriptase to incorporate analogues into the DNA
- Excision mutations: ATP molecule mediates the removal of a nucleoside analogue after its been incorporated (happens to thymidine analogues)
Why are NRTI monotherapy and some combos of NRTIs not recommended?
The combinations need to be different analogs (T analog and C analog, not two T analogs).
NRTIs are preferred in combination for initial therapy to take advantage of some mutations making RT more susceptible to inhibition by some analogues over others.
Monotherapy not recommended due to mutations that may arise
Dual NRTI therapy w/ no other antiretroviral not used, usually use another agent as well
3-NRTI regmimen not normally done, but there are some options.
How do the non-nucleoside RT inhibitors inhibit RT?
These bind directly to the site on RT near the catalytic site. This is near but different than where the NRTIs bind. These are noncompetitive inhibitors (allosteric) that block RNA and DNA dependent DNA polymerase activities.
**FYI these have CYP450 interactions
How do the second generation NNRTIs (ertavirine and rilviripine) differ from the first generation NNRTIs with regards to their structural changes and interactions with HIV RT?(+ what are 2 1st gen and 2 2nd gen agents)
1st gen - nevirapine, efavirenz
2nd gen - ertavirine, rilpivirine; diaryl-pyrimidine-based molecule. These are designed to be inherently flexible, so they can bind even if the site is mutated.
How does HIV become resistant to the non-nucleoside RT inhibitors?
Resistance to NNRTIs can be acquired through a single mutation. Mutations that confer resistance to NNRTIs do not cause resistance of NRTIs
By which mechanism do raltegravir, dolutegravir, and elvitegravir inhibit HIV integrase?
Integrase inhibitors - These inhibit the insertion of HIV DNA into the human genome. These block the strand transfer step of integrase.
Integrase uses divalent metal ions to catalyze insertion. Raltegravir chelates both of the metal ions and stabilizes the enzyme-DNA complex, which prevents it from binding to the chromosomal DNA.
- Elvitegravir is metabolized by CYP3A4, so it’s given with cobicistat to inhibit the CYP3A4 and increase elvitegravir effect
- Dolutegravir has once daily dosing and doesn’t require cobicistat boosting. Also has higher barrier of resistance.
How does HIV become resistant to integrase inhibitors?
Resistance can be caused by primary and secondary mutations.
These have a low genetic barrier to resistance (dolutegravir has higher barrier). They also have extensive, but incomplete cross resistance (dolutegravir less affected).
How can you recognize the structure of HIV protease inhibitors atazanavir and darunavir, and which are the noncleavable bonds? How does the structure of tipranavir, a non-peptidomimetic PI, differ?
HIV protease inhibitors are transition state mimetics (except tipranavir). PIs have non-cleavable linkages (hydroxyethylene bond) instead of the amide bond in HIV protease.
atazanavir -
- most potent PI (except darunavir)
- different resistant mutation profile
darunavir - preferred PI for initial antiretroviral combinations
- makes extensive hydrogen bonds w/ protease backbone
- inhibits HIV protease dimerization
tipranavir - nonpeptidic
- Doesn’t need ritonavir (PI boosting)
- Retains activity against proteases in highly treated patients, even those resistant to darunavir
By which mechanism do protease inhibitors block HIV protease activity?
PIs have non-cleavable linkages (hydroxyethylene bond) instead of the amide bond in HIV protease. The inhibitors bind at the interface of the protease active site. This causes a conformational change in the protease to reduce its activity (inhibit substrates from entering).
How does resistance to protease inhibitors arise and how can the development of resistant viral strains be minimized? How do darunavir and atazanavir differ from other PIs in regards to PI resistance mutations? What is the basis for these differences for darunavir?
PIs have the highest genetic barrier of antiretrovirals. Mutations can be in the active site or far away and these modify the contact between protease and inhibitor. Some mutations could actually increase the susceptibility of others.
Use CYP3A4 inhibitors like ritonavir and cobicistat to reduce mutations
Atazanavir shows a different resistance mutation profile than the other PIs.
Darunavir can display strong hydrogen bonds with the peptide backbone of HIV protease, so it’s less affected by changes in amino acid side chains. It also inhibits HIV protease dimerization.
What are the main toxic effects of protease inhibitors? (6)
Hyperlipidemia
Insulin resistance and diabetes
Lipodystrophy
Elevated liver function tests
Possible increased bleeding risk in hemophiliacs
Drug-drug interactions
What are the effects of nucleoside reverse transcriptase inhibitors, non-nucleoside reverse transcriptase inhibitors, integrase inhibitors, and protease inhibitors on CYP3A4?
NRTIs - no info on these with CYPs
NNRTIs - All metabolized by CYP3A4, potential for interactions with other drugs that are metabolized by CYP3A. Ertavirine inhibits 2C9 and 2C19.
Integrase inhibitors - Elitegravir metabolized by CYP3A4. Dolutegravir has no CYP3A4 interactions
Protease inhibitors - all are substrates and some are inhibitors of CYP3A4. The levels of PI can be influenced by other CYP3A4 inhibitors
- Delavirdine (NNRTI) increases indinavir and saquinavir levels
- Efavirenz (NNRTI) reduces indinavir and saquinavir levels
Why do the structures of ritonavir and cobicistat act on CYP3A4 to act as PI boosters?
Ritonavir
- Ritonavir is the most potent PI inhibitor of CYP450s
- All initial PI treatment regimens use ritonavir combinations
- Low doses used
- Also reduces emergence of resistant viruses by keeping the serum drug concentrations high
Cobicistat
- Peptidomimetic that was designed to inhibit CYP3A4