Exam V2 Flashcards
Describe the large anatomy of the brain and its functions beginning part:
The major large subdivisions of the brain , on a large scale, is it has a telencephalon, diencephalon, mesencephalon and rhombencephalon.
Describe the large anatomy of the brain and its functions beginning part = telencephalon (3)
The telencephalon consists of a olfactory bulb and subcortical structures (e.g., basal ganglia) .
The function of this division of brain is that the cerebrum is responsible for higher (cortical) function.
The basal ganglia is important for a wide range of functions such as action selection, attention, procedural learning, habit learning, conditional learning and eye movements.
Describe the large anatomy of the brain and its functions beginning part = diencephalon (5)
The diencephalon consists of the thalamus, hypothalamus, epithalamus and subthalamus.
The thalamus is the main relay station for the brain between the telencephalon (cerebral cortex) and the brain stem/spinal cord for sensory information.
The epithalamus helps to regulate circadian rhythms
The subthalamus helps to regulate and coordinate motor function.
The hypothalamus main function is to maintain your body’s internal balance (e.g.. regulating blood pressure, body temperature etc…) , which is known as homeostasis.
Describe the large anatomy of the brain and its functions beginning part = mesencephalon (2)
The mesencephalon is the front portion of the brain stem and contains the tectum and tegmentum.
The mesencephalon is responsible for: 1) controlling auditory processing, 2) pupil dilation, 3) eye movement, 4) hearing and, 5) regulating muscle movement.
Describe the large anatomy of the brain and its functions beginning part = rhombencephalon (2)
The rhombencephalon is the lower part of the brain stem (i.e., hindbrain) and contains the medulla oblongata, pons and cerebellum.
This usually deals with autonomic functions such as breathing, alertness, digestion, sweating heart rate, attention and many more.
Describe the different circuit motifys/artifical neural networks beginning part
There is different types of circuit motifs that is utilised in computational neuroscience models such as: 1) feed-forward neural network, 2) feedback inhibition neural network, 3) recurrent neural networks and 4) lateral inhibition neural networks.
Describe the different circuit motifys/artifical neural networks
feed-foward network (2)
A feed-forward neural network is where there is a group of neurons that project directly (have excitatory network connections) to another group of neurons.
Feed-forward neural network is the simplest artificial neural network that is devised
Describe the different circuit motifys/artifical neural networks
feedback inhbition
. Feedback inhibition neural network, excitatory principal neurons have a synapse with inhibitory interneurons , which then inhibit those neurons by feeding back to them (negative feedback loop; Carl & Jong, 2017).
Describe the different circuit motifys/artifical neural networks
recurrent neural network
In recurrent neural networks, neurons are inside a interconnected circuit that sends feedback signals to one another.
Describe the different circuit motifys/artifical neural networks
lateral inhbition neural network
In lateral inhibition neural network, active neurons suppress neighbouring neurons’ activity through inhibitory synaptic connections (Cao et al., 2018).
What are the different ways to record locomotor modes in salamander and what has research showed? = EMG part (4)
The first technique is through in vivo EMG and EMG records the electrical activity in muscles via electrodes.
The EMG data of salamander shows that the muscle activation is different for the different locomotor modes the salamander has.
From EMG data, the swimming gait of the salamander shows that there is a wave of muscle activity that travels down the body (travelling wave) and that there is alternating muscle contractions on either side of the body as well as constant lag between one muscle and the next.
From the EMG data, the walking gait of the salamander shows that all muscles on one side of the trunk become active at first in unison with two legs and the next cycle these muscles are silent and the other side of the trunk becomes active (standing wave).
What are the different ways to record locomotor modes in salamander and what has research showed? = Fictive Locomotion (8)
The second way to measure locomotor modes in salamander is through fictive locomotion.
The methodology of fictive locomotion involves extracting the whole spinal cord and put it into a solution (which has N-methyl-D-aspartate [NMDA]) that helps to keep tissues in a viable state.
The electrodes are then placed directly on the ganglia.
More specifically, fictive locomotion places the electrodes to measure ventral root recordings (VRs) which are nerve endings goes to the muscles.
Ganglia are nerves that come out of the spinal cord and NMDA is a excitatory neurotransmitter that makes neurons fire.
Fictive locomotion will then measure the electrical activation of spinal cord nerves which will be summed to be collective output of many spinal cord neurons sending action potentials along the nerves.
From fictive locomotion method, researchers found that there are neighbouring spinal cord segments at peak at slightly offset times (i.e., there is phase lag between the spinal cord segments).
This reflects the properties we have seen in spinal cord networks like in muscle activation in salamander as there is a wave of muscle activity that travels down their body (travelling wave) and constant lag between one muscle and the next.
What does it allow us to infer about the spinal cord networks? (Fictive Locomotion Research).
This pattern of collective output of fictive locomotion suggests that the spinal segments (as neural networks) must be coupled to each other to influence each other locally (e.g., one side of the muscle is active while the other side of the muscle is relaxed).
How does the spinal cord network of lampreys work to produce locomotion? (8)
The spinal cord locomotor network of lampreys contains cross-inhibitory neurons (CCINs), excitatory inter-neurons (EINs) and motor neurons (MNs).
The network represents one segment of the spinal cord.
Lamprey’s locomotion (i.e., alternating rhythmic activity) is initiated when the interneurons and motor neurons (MN) receive constant tonic input (i.e, constant flow of action potentials impacting on spinal cord neurons) from the brainstem.
More specifically, the interneurons and MNs receive a descending excitatory drive from reticulospinal (RS) neurons in the brainstem (McCllellan & Grillner, 1984).
There is recurrent connections between the EINs within half-segment of the spinal cord.
These EINs will have an excitatory connection to MNs which will make the muscle contract.
At the same time, EINs will excite the CCINs which will have inhibitory connections to all the neurons of the other side of the spinal cord (contra-lateral half-segment).
This inhibition of contra-lateral half segment means that one side of the spinal cord is active whole the other side is silenced (i.e., prevented from firing action potentials) so both sides of the segment are not active simultaneously.
What are the mechanisms that makes one-half of the spinal cord segment stop firing APs if there is tonic input from the brainstem? beginning part (2)
1) spike-frequency adaptation and
, 2) lateral interneurons (LNs) being active mid-cycle and inhibiting CCINs.
What are the mechanisms that makes one-half of the spinal cord segment stop firing APs if there is tonic input from the brainstem? spike-frequency adapation (5)
The spike-frequency adaptation means the reduction of a neuron’s firing rate to a stimulus of constant intensity.
Spike-frequency adaptation helps to terminate ongoing activity as firstly one side of the spinal cord segment becomes active in which excitatory interneurons (EINs) fire lots of action potentials which inhibits the other side of the spinal cord.
After a while, spike-frequency adaptation takes place so firing rate of EINs reduces.
The intervals of EINs without spike becomes larger with time which makes the other side of the spinal cord not as strongly inhibited (i.e., fewer inhibitory action potentials arrive at the contra-lateral side of the spinal cord segment).
This means the other side of the spinal cord segment has time to be active and starts to fire multiple action potentials quickly and in succession which inhibits the previously active side (this is called escape from inhibition).
What are the mechanisms that makes one-half of the spinal cord segment stop firing APs if there is tonic input from the brainstem? lateral interneurons (4)
LNs also help to terminate ongoing activity so one side of the spinal cord segment is active and other one is not.
LNs are featured in the spinal cord locomotor network of lampreys.
LINs terminate ongoing activity so rhythmic alternating activity can occur in lamprey’s locomotion as
later during ipsilateral bursting activity of EINs and motor neurons (MNs) in the network, the LIN become active and inhibit CCIN so it allows the network neurons on the contralateral side to disinhibit and become active (Wallen et al., 1992).
What are the neural mechanisms for the spinal cord lamprey network? (spike-frequency adaptation) - (5)
Spike-frequency adaptation is due to a phenomenon called spike after hyperpolarisation (sAPH).
Hyperpolarization is when membrane potential becomes more negative than resting membrane potential which makes it difficult for next spikes to be emitted in the neuron.
sAPH is due to calcium ions flowing into cell (due to Ca+ ion channels opening) with each action potential (alongside Na+ ions) and slowly accumulates in neuron.
Ca+ has a hyerpolarisation current through a different ion channel called calcium-dependent potassium channel that brings membrane potential down.
The accumulation of Ca+ is sensed by this calcium-dependent potassium channel. Ca+ accumulates slowly until it reaches a steady state where amount of Ca+ transported away (decay of Ca+ concentration) equals the amount of Ca+ that flows in.
Describe the single cell model of the lamprey spinal cord network (6)
How the neural properties of the lamprey’s spinal cord network determining the function of locomotion can be realised by the single cell multi-compartment Hodgkin Huxley model of the lamprey’s spinal cord.
In normal Hodgkin Huxley model we have an equation for each of the individual ion channels which is then plugged into a rate of change of membrane potential over time equation.
However, in a multi-compartment Hodgkin Huxley model of lamprey’s spinal cord that Ekeberg et al., (1991) created they have multiple compartments that constitute different parts of the neuron.
More specifically, they have a soma compartment and three other compartments for the dendrites of the neuron.
Each compartment is composed of different ion channels, such as: 1) sodium (Na), 2) potassium (K), 3) calcium (Ca) and, 4) calcium-dependent potassium channel (KCa).
In the multi-compartment model, the have an equation of rate of change of membrane potential over time which will be 0 (i.e., neuron will be at rest) if Eleak (resting membrane potential) is equal to E (current membrane potential).
Pros and cons of multi-compartment single cell model of lamprey network (4)
The pros of multi-compartment model is that it is more realistic and closer to biology and allows to stimulate the effects of ion channels.
The cons of the multi-compartment model is: 1) need more data to fix the composition of ion channels as need to measure the elements of the equation in real neurons for model to map loosely to biology which is a very labour intensive task,
2) very expensive computationally to stimulate in computer as need to perform equation of rate of change of membrane potential over time for every compartment and for every ion channels and,
3) hard tot une the parameters of equation as all parameters have not been measured so researchers will need to make a tough decision of what plausible values to use based on a whole range of values available in literature.
Explain the Ca+ dynamics at spinal cord lamprey (5)
From experiments, they found that there is two types of calcium pools: 1) calcium pool is one where calcium ions flow in and enter through Ca+ channels due to each action potential in the soma and, 2) calcium pool is where calcium ions flow in at NMDA synapse (when NMDA receptors are activated).
Ekeberg’s calcium-dependent potassium current’s strength is driven by these two calcium pools.
The two pools of Ca+ we have fast and slow Ca+ dyanmics where intake and decay of Ca+ ions happen at different timescales for these two pools.
It is fast for membrane Ca+ pools and slow for NMDA-synapse Ca+ pool.
For NMDA-synapse pool, the Ca+ goes in due to receptor-docked on NMDA-synapse. After enough Ca+ accumulates (accumulation of Ca+ sensed by calcium-dependent potassium channel) it will trigger a hyperpolarising current which brings membrane potential down.
**What is plateau potentials? **How is plateau potentials related to fictive locomotion/How is fictive locomotion slower than in vivo locomotion? (4)
Plateau potentials are when action potentials are blocked with Tetrodotoxin.
NMDA-plateau potentials are produced when its generation of action potentials blocked with tetrodotoxin (TTX) which suppresses Na+ channels from opening and closing as well as no Ca+ flows into soma does it does not affect membrane potential.
However, membrane potential can still be affected with other ion channels.
There is a strong and constant NMDA input (due to Ca+ flowing into NMDA synapse) which brings membrane potential up, membrane potential then plateaus and then decays when enough Ca+ accumulates in which the calcium-dependent potassium channel brings membrane potential down.
What is plateau potentials? How is plateau potentials related to fictive locomotion/How is fictive locomotion slower than in vivo locomotion? (5)
Fictive locomotion is slower than in-vivo locomotion.
Plateau potentials are related to fictive locomotion.
This is because in fictive locomotion the isolated spinal cord is placed into a solution that contains a large amount of NMDA concentration which docks to all the receptors in the spinal cord neurons.
Thus, it is hypothesised that NMDA Ca+ dynamics produce these slow fictive locomotion signals that are slower than in-vivo locomotion.
In other words, fictive locomotion is slower than actual in-vivo locomotion due to the product of un-naturally large NMDA concentration.
What is a central pattern generator and examples (2)
A central pattern generator is a network that takes simple inputs (e.g., tonic [i.e., constant] signal from brain stem) and produces a more complex pattern of neural activity (e.g., oscillations from rhythmic muscle activation).
Examples of CPG include the lamprey locomotor network, heartbeat and digestion.