Extended response qu Flashcards
(87 cards)
The properties/importance of water
Is a metabolite so can be a reactant or product in metabolic reactions e.g. hydrolysis/condensation/photosynthesis/respiration
Is an important solvent so it can dissolve other polar molecules. This is important as metabolic reactions require reactants to be dissolved in water, and substances can be easily transported e.g. glucose/urea/CO2 in blood plasma, mineral ions/sugars in the xylem/phloem
Has a high specific heat capacity so can absorb large amounts of heat before its temperature changes. This is important as it acts as a thermal buffer, large bodies of water remain stable temperatures so act as secure habitats
Has a large latent heat of vaporisation so when molecules of water evaporate, their energy goes with them so the water cools down e.g. sweating
Has cohesion between molecules so it can flow as a continuous stream and surface tension can be produced. This is important as it supports the column of water in the xylem and allows for transpiration, and surface tension can support small organisms on top of water
DNA replication
Double helix unwinds
Hydrogen bonds between complementary base pairs are broken by DNA helicase - ‘unzipped’
Original strands of DNA act as templates
Free DNA nucleotides are attracted to these strands
Complementary base pairs of free nucleotides join to the parental strands
Adenine to Thymine and Cytosine to Guanine
DNA polymerase forms phosphodiester bonds between the phosphate and deoxyribose groups of the nucleotides through condensation reaction
The replication is semi conservative - each DNA molecule contains one original and one new strand
Protein structure
Structure is determined by the position of the amino acids
Primary structure is the sequence of amino acids
Secondary structure is formed by hydrogen bonding between amino acids to form alpha helices or beta pleated sheet
Tertiary structure formed by hydrogen bonds/disulphide bonds/ionic bonds and is 3D
Quaternary structure consists of multiple polypeptide chains and may contain prosthetic groups
Effect of mutations on protein structure
DNA base sequence has changed
Therefore base triplet codes for different amino acid
Amino acid sequence in the polypeptide chain has changed (primary structure)
Tertiary structure is changed as same bonds do not form
Therefore the protein doesn’t complete the same function
Competitive vs Noncompetitive inhibitors
Competitive inhibitor is similar shape to substrate
It fits/binds to the active site
It prevents the enzyme substrate complex from forming
Non-competitive inhibitor binds to the enzyme at an allosteric site
This changes the shape of the active site
So it is no longer complementary to the substrate
So enzyme substrate complex can’t form
Competitive inhibition can be overcome by increasing the concentration of the substrate, non-competitive inhibition cannot
How starch structure is related to function
Unbranched chains of alpha glucose can be wound in a tight coil, making it very compact so many can fit in a small space
It is insoluble so doesn’t effect the water potential so water isn’t drawn in by osmosis
This also means it doesn’t diffuse out of cells
Can be hydrolysed to give alpha glucose which is easily transported and readily used in respiration
Branched form has many ends to be simultaneously acted upon by enzymes
How cellulose structure is related to function
Beta glucose forms straight unbranched chains
These run parallel, allowing for hydrogen bonds
These also are compact so many fit in a small space
Hydrogen bonds strengthen cellulose - used in cell walls
Parallel chains form microfibrils, which group to form fibres which increases overall strength
How glycogen structure is related to function
Insoluble so doesn’t draw water in from osmosis
Insoluble so doesn’t diffuse out of cells
Compact so many in a small space
More highly branched than starch so more ends for enzymes to act on
Rapidly broken down to alpha glucose for respiration
How DNA structure is related to function
Sugar phosphate backbone provides strength and stability to the molecule
Long molecule means it can store lots of information
Helical so is compact
Has a sequence of bases to code for amino acids
Double stranded so each strand can act as template during DNA replication
Complementary base pairing means replication is very accurate
Many hydrogen bonds between strands for strength/stability
Hydrogen bonds relatively weak so it allows strands to separate for replication or protein synthesis
ATP synthesis and its roles within cells
Used to provide energy for energy requiring reactions
E.g. muscle contraction, active transport, metabolic processes, endo/exocytosis
Used for the phosphorylation of molecules through transfer of phosphate
ATP is a immediate energy source and releases a manageable amount of energy
Synthesised through a condensation reaction between ADP and Pi (inorganic phosphate)
Prokaryotic vs Eukaryotic cells
Eukaryote is bigger than prokaryote
E has a nucleus but P has free DNA
E has mitochondria and P doesn’t
E has golgi apparatus/endoplasmic reticulum and P doesn’t
P has cell wall made of murein
E DNA is associated with histones, P DNA is naked
E has linear DNA, P has circular DNA
E has larger ribosomes
Light microscope vs electron microscope
Light has lowest resolution due to the wavelength of light being too long
TEM has the highest resolution
TEM allows internal structures within the cell to be seen
SEM does not require extremely thin sections
SEM shows a 3D image, light and TEM are 2D
TEM and SEM must be in a vacuum so you can’t observe living specimens
TEM can show artefacts
TEM requires a complex staining method despite the image being in black and white
Light shows colour
Stages of mitosis
Prophase - nucleolus shrinks and centrioles move to opposite poles of the cell, spindle fibres form, chromosomes condense and they can be seen as sister chromatids joined at the centromere
Metaphase - sister chromatids line up along equator of cell and spindle fibres attach at centromeres
Anaphase - spindle fibres pull chromatids apart and the move to opposite poles of the cell
Telophase - chromosomes uncoil and nuclear envelope and nucleolus form around each set
Behaviour of chromosomes during mitosis
In prophase, chromosomes condense
In prophase, chromosomes appear as two sister chromatids joined at the centromere
In metaphase, pairs of sister chromatids line up at the centre of the cell
In metaphase, chromatids are attached to spindle fibres by their centromere
In anaphase, chromatids are separated at the centromere and are pulled to opposite poles of the cell
In telophase, the chromosomes uncoil and become longer
The cell cycle
Interphase - G1 cell grows and new organelles/proteins are made, S DNA replicates, G2 cell grows and proteins needed for cell division are made
Prophase - nucleolus shrinks and centrioles move to opposite poles of the cell, spindle fibres form, chromosomes condense and they can be seen as sister chromatids joined at the centromere
Metaphase - sister chromatids line up along equator of cell and spindle fibres attach at centromeres
Anaphase - spindle fibres pull chromatids apart and the move to opposite poles of the cell
Telophase - chromosomes uncoil and nuclear envelope and nucleolus form around each set
Cytokinesis - cell surface membrane constricts and divides the cytoplasm to form two genetically identical daughter cells
Binary fission
Replication of circular DNA
Replication of plasmids
Division of cytoplasm
To produce daughter cells
Studying cells/organelles (fractionation, homogenisation etc)
Homogenise - blend tissue and filter for large debris
Put sample in cold (to stop enzymes), isotonic (so no osmosis and organelles don’t swell/shrivel), and buffered (prevent protein denaturation) solution
Put sample in centrifuge and spin
Remove nuclear pellet and spin supernatant liquid
Spin at higher speed until chloroplast pellet is formed
Cotransport of glucose/amino acids
Active transport of sodium ions out of epithelial cells by the sodium potassium pump and into the blood
There is now a lower concentration of sodium ions in the epithelial cell compared to the lumen of the ileum
Sodium ions move down the concentration gradient into the epithelial cells from the lumen of the ileum
The sodium ions bring glucose/amino acid with them through a cotransport protein
The glucose/amino acid molecules are moving against their concentration gradient so this is an indirect version of active transport
There is now a higher concentration of glucose/amino acids in the epithelial cell
Glucose/amino acids move by facilitated diffusion into the blood
Comparing cell transport (osmosis/active transport/facilitated diffusion etc)
Osmosis - movement of water down a water potential gradient from higher to lower water potential
Active transport - movement against concentration gradient via a carrier protein, using ATP
Facilitated diffusion - diffusion down a concentration gradient via carrier/channel protein
Diffusion - movement of small/nonpolar molecules down a concentration gradient
Cotransport - movement of two different substances using a carrier protein
Phagocytosis
Phagocyte detects pathogen and attaches to antigens on cell surface of pathogen
Phagocyte engulfs pathogen and forms phagosome
Lysosome fuses with phagosomes and releases lysozymes
Lysozymes hydrolyse the pathogen
Hydrolysis products are absorbed by the phagocyte
Vaccination
Vaccine contains antigen from pathogen
Phagocyte presents antigen on its surface
T cells with complementary receptor proteins bind to antigen
T cell stimulates B cell
With complementary antibody on its surface
B cell secretes large amounts of antibody
B cell divides to form clones all secreting the same antibody
B cells also produce memory cells
If infected with same pathogen, memory cells can act quickly to produce the correct antibody
Cell-mediated response (T cells)
Pathogen enters body
Phagocyte presents antigen on its surface
Complementary protein receptors on the surface of T cells bind to the antigen
This activates the T cell to divide rapidly by mitosis and form a clone of T cells
These develop into memory cells for secondary immune response
They stimulate phagocytes to engulf pathogens
They stimulate B cells to divide and secrete antibodies
They activate cytotoxic T cells
Humoral response (B cells)
Surface antigens of pathogen are taken up by B cell
The B cell presents the antigens on its surface
Helper T cells attach to the antigens on the B cell with receptors and activate the B cell
B cell divides by mitosis to give a clone of plasma cells
The cloned plasma cells produce and secrete the specific antibody complementary to the antigen on the pathogen
The antibody attaches to the antigens on the pathogen and destroys them
Some B cells develop into memory cells
Active immunity vs passive immunity
Active involves memory cells, passive does not
Active involves the production of antibodies by plasma/memory cells
Passive involves the antibody being introduced to the body from an outside source
Active is long term as the antibody is produced in response to antigen
Passive is short term because the antibodies break down and are not replaced
Active can take time to develop but passive is fast acting