Feb caps Flashcards

1
Q

write the symbol equation for photolysis

A

H2O –> ½ O2 + 2e- + 2H+

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2
Q

Describe photoionisation of chlorophyll

A

light energy is absorbed by the chlorophyll and
the energy results in the electrons becoming
excited and raising up an energy level to leave
the chlorophyll. Therefore the chlorophyll has
been ionised by light. Some of the energy from
the released electrons is used to make ATP and
reduced NADP in chemiosmosis.

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3
Q

Where does the light-dependent reaction (LDR) occur?

A

Thylakoid membrane

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4
Q

What are the three key reactions in the LDR?

A

Photoionisation of chlorophyll
Photolysis
Chemiosmosis

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5
Q

describe chemiosmosis in 4 key
stages

A

Step 1: The electrons that gained energy and left the
chlorophyll move along a series of proteins embedded
within the thylakoid membrane.
Step 2: As they move along, they release energy and some of
the energy from electrons is used to pump the protons
across chloroplast membranes.
Step 3: An electrochemical gradient is created. The protons
pass through the enzyme ATP synthase, which results in
the production of ATP.
Step 4: The protons combine with the co-enzyme NADP to
become reduced NADP. As the protons move from a high to
low concentration gradient this is known as chemiosmosis.

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6
Q

why is the LIR temperature sensitive?

A

It involves the enzyme Rubisco

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7
Q

What is the role of ATP in the Calvin cycle?

A

To provide the energy to reduce GP to TP
To provide the energy to regenerate RuBP from
TP

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8
Q

What is the role of NADPH in the Calvin cycle?

A

To provide an H to reduce GP to TP

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9
Q

What is the triose phosphate used for?

A

1 To donate one carbon each turn of the cycle to
go towards making a hexose sugar
2 To regenerate RuBP so the cycle can continue

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10
Q

Which molecules from the LDR are used in the
LIR?

A

1 ATP
2 Reduced NADP

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11
Q

Where does the LIR occur?

A

The stroma of the chloroplast

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12
Q

What can the hexose sugars made be used
for?

A

Whilst glucose is the product, this
monosaccharide can join to form disaccharides
such as sucrose, and
polysaccharides such as cellulose and starch. It
can also be converted into glycerol and
therefore combine with fatty acids to make
lipids for the plant.

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13
Q

draw the calvin cycle

A
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14
Q

draw glycolysis

A
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15
Q

describe glycolysis

A

Substrate level phosphorylation
- The glucose has 2 phosphate
groups added to it from 2 ATP
molecules.
Phosphorylation makes the
glucose-2-phosphate unstable
and it splits into two x 3-carbon
compounds, triose phosphate
(TP).
The 2 TP molecules are oxidised
to form 2 pyruvate molecules by
removing an H from each. The H
is picked up by 2 NAD molecules
to become reduced NAD. This
process also releases 4 ATP.

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16
Q

Where do the four stages of aerobic
respiration occur?

A
  1. Glycolysis - cytoplasm
  2. Link reaction - Mitochondrial matrix
  3. Krebs cycle - Mitochondrial matrix
  4. Oxidative Phosphorylation - Cristae /inner
    mitochondrial membrane
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17
Q

What are the products of glycolysis?

A

2 x pyruvate
Net gain of 2 ATP
2 X reduced NAD

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18
Q

describe the key stages in
the link reaction.

A

The pyruvate made in
glycolysis is oxidised to
acetate.
NAD picks up the hydrogen
and becomes reduced NAD.
A carbon atom is lost as
carbon dioxide.
Acetate combines with
coenzyme A to produce acetyl
coenzyme A.

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19
Q

draw the link reaction

A
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20
Q

describe the key stages in the
Krebs cycle.

A

The acetyl CoA reacts with a four-carbon molecule, releasing
coenzyme A and producing a six-carbon molecule that enters the
Krebs cycle.
In a series of oxidation-reduction reactions, the Krebs cycle
generates 8 reduced coenzymes, 2 ATP by substrate-level
phosphorylation, and 4 carbon dioxides are lost.

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21
Q

draw the krebs cycle

A
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22
Q

What are the products of the Krebs cycle (from 1
glucose molecule originally) ?

A

6 x reduced NAD
2 x reduced FAD
4 x carbon dioxide
2 x ATP

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23
Q

What is the role of oxygen in oxidative
phosphorylation?

A

Oxygen is the final electron acceptor in the electron
transport chain. The oxygen combines with the
electrons and the protons to form water.

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24
Q

what happens to the reduced co-enzymes in this
stage?

A

All of the accumulated reduced coenzymes release
the hydrogens which are split into protons (H+) and
electrons (e-).

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25
describe how ATP is produced in oxidative phosphorylation.
electrons are passed down a series of electron carrier proteins embedded in the inner mitochondrial membrane, losing energy as they move along (electron transport chain). The small amount of energy the electrons release pumps protons from the mitochondrial matrix into the intermembrane space by active transport. This creates an electrochemical gradient across the membrane. Therefore, the protons move down the electrochemical gradient back into the matrix via ATP synthase making ATP.
26
Where does anaerobic respiration occur?
the cytoplasm
27
Why is it important that NAD is re-oxidised in anaerobic respiration?
So that it can be reused in glycolysis and ensure ATP continues to be produced.
28
describe the nitrogen cycle (include ammonification, nitrification, nitrogen fixation and denitrification)
Nitrogen-fixing bacteria can break the triple bond between the two nitrogen atoms in nitrogen gas in the atmosphere and fix this nitrogen into ammonium ions. The bacteria are either free-living in the soil or symbiotic (mutualistic relationship), living in the root nodules of plants. This is common in leguminous plants such as clover and beans. Nitrification The ammonium ions in the soil are converted to nitrite and then nitrate ions in the soil by nitrifying bacteria. This is a two-stage oxidation reaction. Denitrification This stage is not useful as it returns the nitrogen in compounds back to nitrogen gas in the atmosphere, so it cannot be absorbed by plants. Anaerobic denitrifying bacteria do this. Ammonification Proteins, urea and DNA can be decomposed in dead matter and waste by saprobionts. These are bacteria and fungi that can digest waste extracellularly and return ammonium ions to the soil; this is saprobiotic nutrition.
29
describe The role of saprobionts in decomposition.
These microbes will respire on dead or waste organic matter. This will cause decay and recycle nutrients into the soil so plants can absorb the nitrates/phosphates via active transport in their root hair cells
30
describe the role of mycorrhizae
Mycorrhizae are fungal associations between plant roots and beneficial fungi. The fungi entwined around the plant roots provide a larger surface area for water and mineral absorption. The fungi part of the mycorrhizae acts like a sponge and can absorb and hold onto water and minerals surrounding the root
31
describe The role of bacteria in the nitrogen cycle
Bacteria are used in saprobiotic nutrition, ammonification, nitrification, nitrogen fixation and denitrification to convert nitrogen-containing compounds into other N-containing compounds
32
Why do organisms need nitrogen?
To create amino acids/proteins, DNA, RNA and ATP.
33
What is phosphorous needed for?
To create DNA, RNA, ATP and phospholipid bilayers
34
Describe how the phosphorous cycle differs from the nitrogen cycle
Phosphorous is not found as a gas in the atmosphere. Instead, it is mainly found as a phosphate ion, in mineral form in sedimentary rocks.
35
Why are fertilisers needed when growing crops?
To replace the nitrate and phosphate ions lost when plants are harvested and removed from nutrient cycles as crops.
36
What are the two types of fertilisers?
natural (manure) artificial (inorganic chemicals).
37
What are the pros and cons of each type of fertiliser?
Natural fertilisers are cheaper, and often free if the farmer owns animals. However, the exact minerals and proportions cannot be controlled. Artificial fertilisers are chemicals created to contain exact proportions of minerals. Their high solubility means that larger quantities are washed away with rainfall and therefore have a greater impact on the environment.
38
What is leaching?
This is when water-soluble compounds are washed away, often into rivers or ponds.
39
Describe eutrophication (4 marks)
This is when nitrates leached from fertilised fields stimulate the growth of algae in the pond. The excessive growth of algae creates a blanket on the surface of the water which blocks out light. As a result, the plants below cannot photosynthesise and die. Bacteria within the water feed and respire on the dead plant matter. This results in an increase in bacteria, which are all respiring and using up the oxygen within the water. Eventually, fish and other aquatic organisms die due to the lack of dissolved oxygen in the water.
40
What is a taxes response?
A simple response in which an organism will move its entire body towards a favourable stimulus or away from an unfavourable stimulus.
41
What is a kinesis response?
When an organism changes the speed of movement and the rate it changes direction.
42
Name 3 stimuli that simple organisms respond to by taxes and kinesis
1 light 2 moisture 3 chemicals
43
More complex organisms have a nervous system. Draw a flow diagram to show a simple reflex response.
Stimulus --> Receptor -->Coordinator-->Effector-- >Response
44
Which two structures comprise the central nervous system (CNS)?
the brain and spinal cord
45
which structures comprise the peripheral nervous system (PNS)?
Receptors, sensory and motor neurones
46
Which stimuli does the Pacinian corpuscle detect?
Pressure
47
Where do you find many Pacinian corpuscle receptors?
Deep in the skin of the fingers and feet
48
draw and label a pacinian corpuscle
49
Describe how the pressure detected in the Pacinian corpuscle can generate an action potential.
In the resting state, Na+ channels are too narrow for Na+ to diffuse into the sensory neurone therefore resting potential is maintained. When pressure is applied it deforms the neurone plasma membrane, stretches and widens the Na+ channels so Na+ diffuses which leads to the establishment of a generator potential.
50
Describe how the resting potential is maintained
The resting potential is maintained by a sodium-potassium pump, involving active transport and therefore ATP. The pump moves 2 K+ions in and 3 Na+ ions out. This creates an electrochemical gradient and results in K+ diffusing out and Na+ diffusing in. Due to the membrane being more permeable to K+, more are moved out resulting in the -70mV.
51
draw and label the graph to show where the following are occuring: Resting state Repolarisation Depolarisation Refractory period
52
describe depolarisation
1. A stimulus provides the energy that can cause the sodium voltagegated channels in the axon membrane to open. This causes Na+ to diffuse in, which increase the positivity inside of the axon. 2. This causes more voltage-gated channels to open, so even more Na+ diffuse in. 3. When a threshold of +40mV is reached inside the axon, the voltagegated sodium channels close and instead voltage-gated potassium ion channels open
53
describe repolarisation
this results in potassium ions diffusing out, and the axon becomes negative again and is repolarised.
54
describe hyperpolarisation
Temporarily the axon becomes more negative than the -70mV and is hyperpolarised.
55
What is meant by the all-or-nothing principle?
If the depolarisation does not exceed the -55 mV threshold, then an action potential and the impulse are not produced (Nothing). Any stimulus that does trigger depolarisation to -55mV will always peak at the same maximum voltage (All). Bigger stimuli instead increase the frequency of action potentials.
56
State the three factors that affect the speed of conductance and explain how
1 myelination and saltatory conduction here are gaps between the myelin sheath, called nodes of Ranvier. The action potential jumps from node to node (saltatory conduction), which means the action potential travels along the axon faster as it doesn’t have to generate an action potential along the entire length (just at the nodes of Ranvier). 2 Axon diameter With a wider diameter, the speed of conductance increases. A wider diameter means that there is less leakage of ions and therefore action potentials travel faster. 3 Temperature A higher temperature increases the speed of conductance for two reasons: 1. The ions diffuse faster 2. The enzymes involved in respiration work faster. Therefore there is more ATP for active transport in the Na+/K+ pump.
57
What is the refractory period and give three reasons why it is important
After an action potential has been generated, the membrane enters a refractory period when it can’t be stimulated, because sodium channels are recovering and can’t be opened. This is important because: 1. It ensures that discrete impulses are produced, meaning that an action potential cannot be generated immediately after another one to make sure that each is separate from another. It ensures that action potentials travel in one direction. This stops the action potential from spreading out in two directions which would prevent a response. It limits the number of impulse transmissions. This is important to prevent overreaction to a stimulus and therefore overwhelming the senses.
58
describe the actions at a cholinergic synapse
An action potential arrives at the synaptic knob. Depolarisation of synaptic knob leads to the opening of Ca2+ channels and Ca2+ diffuses into the synaptic knob. Vesicles containing acetylcholine neurotransmitters move towards and fuse with the presynaptic membrane. Acetylcholine is released into the synaptic cleft. Acetylcholine diffuses down a concentration gradient across the synaptic cleft, to the post-synaptic membrane; acetylcholine binds by the complementarity of shape to receptors on the surface of the post-synaptic membrane. Na+ ion channels on the post-synaptic membrane open and Na+ diffuse in; if enough acetylcholine binds, and enough Na+ diffuse in to raise the membrane potential above the -55mV threshold, then the post-synaptic neurone becomes depolarised. The acetylcholine is degraded by acetylcholinesterase into choline and acetate and released from the receptor; the Na+ channel close and the post-synaptic neuron can re-establish resting potential; the neurotransmitter is transported back into the presynaptic neuron where it is recycled.
59
What is meant by summation?
The rapid build-up of neurotransmitters in the synapse helps generate an action potential
60
What is the difference between spatial and temporal summation?
Spatial summation: many different neurones collectively trigger a new action potential by combining the neurotransmitter they release to exceed the threshold value. Temporal summation: One neurone releases neurotransmitter repeatedly over a short period of time to add up to enough to exceed the threshold value
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