GeneticMedicinesIII-Feb7(s) (1) - Copy Flashcards

(54 cards)

1
Q

What is Leber congenital amaurosis (LCA)?

A

One of the most common causes of blindness in children (1:40,000)

LCA is associated with mutations in the RPE65 gene, particularly type 2.

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2
Q

What gene mutation is associated with Leber congenital amaurosis?

A

Mutation in RPE65

RPE65 produces retinal pigment epithelial-specific protein necessary for vision.

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3
Q

What are the results of RPE65 mutations?

A

Dysfunction and degeneration of retina

This results in vision impairment.

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4
Q

What was the vector used in the initial clinical trials for LCA?

A

AAV2-RPE65 vector

This vector was injected sub-retinally.

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5
Q

When were the initial clinical trials for LCA conducted?

A

2008

The trials showed visual function improvement in all treated patients.

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6
Q

What improvements were observed in the study eyes during LCA trials?

A

Cone and rod sensitivities increased significantly

Improvements were localized to treated areas.

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7
Q

When was the first gene therapy for LCA approved?

A

October 2020

Patients must still have viable retinal cells for treatment.

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8
Q

What is familial lipoprotein lipase deficiency?

A

An autosomal-recessive disorder caused by LPL mutation

It leads to hypertriglyceridemia and related health issues.

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9
Q

What are the consequences of LPL mutation?

A

Hypertriglyceridemia, jaundice, recurrent pancreatitis, enlarged liver, cutaneous xanthomata

These conditions result from the dysfunction of fat metabolism.

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10
Q

What is Glybera?

A

Muscle-specific AAV1-LPL gene therapy

It costs ~$1 million per treatment.

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11
Q

What was the outcome of Glybera treatment?

A

40% reduction in median fasting plasma TG between 3-12 weeks

The reduction rebounded by week 26.

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12
Q

What disorder is associated with mutations in the factor IX gene?

A

Hemophilia B

Hemophilia B is an X-linked recessive disorder affecting males.

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13
Q

What mutation causes Hemophilia A?

A

Mutation in F8 gene

Hemophilia A is also an X-linked recessive disorder.

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14
Q

How are factor levels affected in hemophilia disorders?

A

Usually less than 1% of normal factor levels

This leads to increased bleeding risk.

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15
Q

What is Hemophilia B?

A

A genetic disorder caused by a deficiency of factor IX

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16
Q

What vector is used in the treatment of Hemophilia B?

A

Self-complementary adeno-associated virus (AAV) vector expressing a human factor IX transgene (scAAV2/8-LP1-hFIXco)

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17
Q

What was the increase in factor IX levels after treatment with scAAV2/8-LP1-hFIXco?

A

3-11% up to 16 months after treatment

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18
Q

What is the significance of the factor IX variant discovered in Hemophilia B?

A

It is a hyperactive FIX gene associated with thrombophilia

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19
Q

What is HEMGENIX and when was it approved?

A

A treatment for Hemophilia B, FDA approved in Nov 2022

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20
Q

What is the average level of factor IX achieved with HEMGENIX?

A

33% FIX levels

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21
Q

What is Roctavian and when was it approved?

A

A treatment for Hemophilia B, EU approved in July 2022 and FDA approved in July 2023

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22
Q

What is Spinal Muscular Atrophy type I?

A

A genetic disorder characterized by the loss of motor neurons leading to muscle weakness

23
Q

What gene is targeted by Zolgensma for treating Spinal Muscular Atrophy?

24
Q

What is the cost of Zolgensma?

A

~$2.1 million

25
What is the survival rate for patients with Spinal Muscular Atrophy type I?
75% die or require a ventilator by ~12 months
26
What is Duchenne Muscular Dystrophy (DMD)?
An X-linked monogenic disorder characterized by the absence of dystrophin
27
What is the role of dystrophin in muscle cells?
Links the cytoskeleton to the cell membrane and extracellular matrix
28
What is the genomic size of the DMD gene?
2.5 Mb
29
What is microdystrophin?
A smaller form of dystrophin discovered in patients with less severe muscular dystrophy
30
What is Elevidys?
A treatment involving a single IV injection of rAAVrh74.MHCK7.micro-dystrophin
31
What is the cost of Elevidys?
$3.2 million
32
What age group is targeted for Elevidys treatment?
Children 4-8 years old
33
What does CRISPR stand for?
Clustered Regularly Interspaced Palindromic Repeats
34
Who discovered CRISPR and when?
Mojica in the 1990s
35
What are the components of CRISPR?
30 bp palindromic sequences and 36 bp spacers
36
What were the initial proposed functions of CRISPR systems?
Gene regulation, replicon partitioning, DNA repair, and other roles
37
True or False: CRISPR was first published in 1995.
True
38
What are the two major classes of CRISPR systems?
Class 1 and Class 2 ## Footnote Each class contains multiple types and subtypes.
39
How many types does each major class of CRISPR systems have?
3 types ## Footnote Each type can have multiple subtypes.
40
What is the frequency of the ‘GG’ dinucleotide in the reference human genome?
5.21% ## Footnote This frequency is used to estimate PAM sites in the genome.
41
How many NGG PAM sites are expected in the human genome based on the ‘GG’ frequency?
161,284,793 NGG PAM sites ## Footnote This is calculated using the frequency of ‘GG’ in the genome.
42
Approximately how often does a ‘GG’ dinucleotide occur in the human genome?
Every 42 bases ## Footnote This is a rough estimate based on the frequency of ‘GG’.
43
True or False: CRISPR systems only have one major class.
False ## Footnote There are two major classes of CRISPR systems.
44
Fill in the blank: The expected frequency of ‘GG’ in the human genome leads to an estimated _______ PAM sites.
161,284,793 ## Footnote This estimation is based on the frequency of ‘GG’ in the reference genome.
45
What year was the referenced paper published in Cell regarding CRISPR systems?
2014 ## Footnote The specific date is June 5, 2014.
46
Who focused on the spacers of unknown origin in the early 2000's?
Mojica
47
What database did Mojica use to look for shared similarities of known sequences?
BLAST database
48
How many spacers did Mojica analyze?
4500 spacers
49
How many spacers were found to match known sequences?
88 spacers
50
Most matched sequences from what type of organisms?
Viruses
51
What conclusion did Mojica reach about the immune system of bacteria?
It must be an adaptive immune system
52
In what year did Mojica conclude that the bacterial immune system is adaptive?
2003
53
Fill in the blank: Mojica plugged spacer sequences into the _______ database.
BLAST
54
True or False: Mojica's earlier attempts to find shared similarities were unsuccessful due to the database size.
False