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Module 102: Molecular cell biology > Genetics and DNA > Flashcards

Flashcards in Genetics and DNA Deck (32)
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1

Heterochromatin (3)

Smallest amount of interphase chromatin: highly condensed state of chromatin that contains tightly wound DNA

This prevents any transcription or DNA replication from undergoing.

Stained darker in an electron micrograph

2

Euchromatin

Largest amount of interphase chromatin: Loosely wound DNA that allows transcription and DNA replication.

Euchromatin is stained lighter in in electron micrographs.

3

Main functions of DNA that is related to its structures.

Large macromolecule that is able to store information for organism synthesis, through complementary base pairing.

Allows accurate replication of DNA through complementary base pairing.

Allows beneficial mutations to be selected for.

4

Genome's relation to disease susceptibility.

Disease can be caused by a single gene: Monogenic. A change in this gene cause loss/ gain in function of a protein.

DIsease can be caused by polygenic genes: More than one gene influence the presence of a disease.

Diseases can also be initiated by the interaction between environmental and genetic factors.

5

Huntington's disease.

Neurodegenerative disease inherited in an autosomal dominant fashion.

Causes damage in the nerve cells in areas of the brain.

Caused by the increase of CAG trinucleotide repeats in Huntingtin gene (HTT), in chromosome 4 .

An increase in CAG (insertion), which codes for glutamine, create a gain in function.
Polyglutamine creates a toxic product which kills neurones.

6

Nucleosome

Compose of DNA, negatively charges, wound around positively charged histones.

DNA is wound around an octamer, composed of 8 histones, two of each: H2A, H3, H2B, H4.

Core histones are linked with linker DNA.

7

Single nucleotide polymorphism.

Single base change in the DNA sequence.

It can either change the amino acid sequence (non-synonymous) or not , (synonymous) .


8

How can mutations be characterised? (3)

1. Effect on heritability:
Germ line or somatic.

2. Scale of mutation:
Chromosomal or single nucleotide polymorphism.

3. Effect on normal function:
Loss, gain or no effect

9

Describe the appearance of a metaphase chromosome

Short arm and long arm. The length of the chromosomes before and after the centromere.

Telomere: Repetitive sequence of DNA usually at the end of the chromosome.

Centromere: Separates chromosome into long arm and short arm. SIte of attach for sister chromatids.

Kinetochore: Complex proteins attached to the centromere where spindle microtubules attach to during metaphase and anaphase.

10

Prophase

Chromosomes condenses

Mitoic spindle fibres start to form from centrosomes

11

Prometaphase

Nuclear membrane and envelope disintegrates.

Spindle fibres from centromeres attach to the kinetochores of the chromosomes

12

Metaphase

Chromosomes are aligned across the centre of the equator using spindle fibres which are oriented at opposite ends of the cell.

13

Anaphase

Spindle microtubule contracts and shortens

Pulls the chromosomes apart at the centromere towards spindle poles.

Chromosome is separated into sister chromatids.

14

Telophase

Chromosomes arrive at opposite poles.

Nuclear envelope forms around chromosomes.

15

Cytokinesis

Contractile ring creates a cleavage furrow

Causes cytoplasm to divide into two genetically identical cells.

16

Cell cycle checkpoints

Controlled by cyclins and protein kinases

Controls whether cells die, wait or continue the cell cycle

Checks for:
Damaged DNA
Unfavourable extracellular environments
Improper attachment of chromosome to mitotic spindle fibre

17

P53 regulator

Cell cycle checkpoint located at G1 which checks for damaged DNA

Around 50% of cancers have mutations in this reglator

18

Enzymes involved in DNA replication

DNA helicase:
Breaks hydrogen bonds between base pairs and allows the formation of replication forks.

DNA primase:
Works on lagging strand by adding short sequence of nucleotides to allow DNA polymerase to start replication.

DNA polymerase:
Adds nucleotides to temple DNA, forms phosphodiester bonds between nucleotides.

DNA ligase:
Seals up okazaki fragments

DNA binding proteins:
Keep DNA straight and stable during replication by preventing double helix from reforming.

19

Werner syndrome

Condition caused by the mutation to DNA helicase

Causes DNA helicase from being efficient and fast enough

Symptoms:
Premature aging
Increased risk in conditions seen in older people at a young age:
osteoporosis, atherosclerosis and cataracts.

20

How are mutations in DNA prevented during the cell cycle?

DNA polymerase proof reads the DNA sequence during S phase

Excision repair systems act throughout the cell life cycle

21

Excision repair system

When an error occurs in DNA:

1. DNA nuclease cuts out the wrong base pair.

2. DNA polymerase inserts the correct base pair.

3. DNA ligase seals up the new base pair back into the DNA sequence

22

Sources of DNA damage

Internal:
Caused from errors in normal cell function, like error in DNA replication.

External:
Mutagens
UV
Ionising radiation.

23

How is DNA packaged into chromatin

Using histones to form a nucleosome:

DNA wrap around a histone complex (histone octamer) composed of two copies of; H2A, H2B, H3, H4.

H1, histone 1, binds to linker DNA which connects nucleosomes together and compacts them.

24

Chromatin remodelling complexes

Protein complexes that attach to the histone octamer and DNA

Alters the shape of the nucleosome by making it tighter/ looser.

It is inactive in mitosis as this prevents chromosomes from being looser and unwinding

25

Histone modifying enzymes

Enzymes that allows chromatin remodelling:

Acetyl, phosphate or methyl groups can be added/ removed from histone chains.

Changes the hydrophobic and hydrophilic tendencies of histone, which causes chromatin to be looser or tighter.

26

Homologous recombination

Occurs in prophase 1:

Homologous chromosomes and their non-sister chromatid cross over alleles at the same genes by forming chiasmas.

Separated when anaphase occurs.

27

Benefits of sexual reproduction

Increases genetic variation by combining genes.

Allows deleterious combination of genes to be removed.

This prevents the population from being less susceptible to changes in the environment.

28

Haemophilia A

Recessive X-linked genetic condition:

Lack of clotting factor 8. Makes patients more susceptible to severe haemorrhage from trauma as there is a defect in coagulation.

Causes by deletion or inversion in the F8 gene.

29

Cystic fibrosis

Autosomal recessive disorder

Mutation of the cystic fibrosis transmembrane conductance regulator protein (CFTR), causes a loss in function.

30

Sickle cell disease

Autosomal 'incomplete' recessive disorder.

Caused by mutation in the HBB gene on chromosome 11:
Glutamic acid is replaced with valine at the 6th position.

'incomplete': Carriers of this mutation still have the recessive advantage of protection against malaria.