Genetics in Medicine 3 Flashcards Preview

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Flashcards in Genetics in Medicine 3 Deck (73)
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1

What is the molecular difference between deoxyribose and ribose sugar and what consequences does this have for the structure?

Ribose sugar has a hydroxyl group on C2 which is missing in deoxyribose
This hydroxyl group gives potential for nucleophilic attack on nearby phosphodiester bonds meaning that RNA is transient (much more unstable) but DNA is much more stable

2

What direction is DNA written in and DNA and RNA synthesised?

written in 5' to 3' direction

3

When DNA sequence is written in shorthand the sequence of which strand in which direction is the one written out?

The sense strand in the 5 to 3 direction

4

In which stage of the cell cycle does DNA replication take place?

S phase
Before mitosis

5

In G1 phase how much DNA do you have?

One paternal chromosome
One maternal chromosome
2n

6

In G2 phase (after S phase) how much DNA do you have?

One paternal chromosome and one maternal chromosome each made up of 2 sister chromatids
4n

7

How many strands of DNA is one individual chromosome made up of?

One strand of DNA

8

How many Mb of DNA do we have per haploid genome?

3000Mb per haploid genome

9

Which is the largest chromosome?

Chromosome 1

10

What percentage of DNA is non coding?

>90%

11

How many coding genes do we have approxiamtely?

20,000

12

The average gene size is 50-100kb but the average mRNA is ~ 2kb, why is this?

Because of splicing, introns in the gene are removed leaving just exons

13

What are the 2 main classes of sequences in the human genome?

Single copy sequences (non repetitive)
Repetitive sequences

14

What are the 2 types of repetitive sequences on the human genome?

1) interspersed repeats
2) Satellite DNA

15

Alu repeats are an example of what kind of repeats?

Interspersed repeats

16

What is meant by satellite DNA?

Large blocks of repetitive sequences - heterochromatin

17

What is the basic definition of a gene?

Functional units of DNA

18

What is meant by a gene being expressed?

All genes are transcribed at some point - ie copied into RNA
Some of those are then translated - turning the RNA into a protein, but not all as some are functional as mRNA eg. tRNA or rRNA - have short and long coding RNAs

19

What are the 3 main component parts of a gene?

1) Exons
2) Introns
3) Regulatory sequences eg. promoters, enhancers, locus control regions

20

By definition where does transcription begin and where does translation begin?

Transcription starts at the beginning of exon 1
Translation begins at the initiator site for translation
Dont get them mixed up

21

What is alternative splicing and what can it lead to?

Some exons can be removed during splicing leaving 2 or more possible recombinations for spliced mRNA
This leads to much greater genetic variation from just those 20,000 genes - you can end up with 2 different possible proteins from one gene

22

What is mutually exclusive exon choice in alternative splicing?

May be a piece of DNA with 2 exons that are identical and sometimes one may be incorporated and the other excluded and visa versa

23

What is meant by the term gene families?

When you look at how the genome has evolved it has evolved alot through duplication and divergence of ancestory genes - you thus end up with gene families of structurally related genes - these can end up close together on a genome or widely dispersed

24

What happens in the evolution of genes in terms of DNA duplication and divergence?

1) Start off with an ancestral gene
2) As a result of inaccuracies end up with gene duplication - these are initially tandomly arranged
3) As a result of further mutations you get divergence of these duplications
4) They may then aquire different functions

25

What are pseudogenes and why can they create problems clinically?

Genes that were once useful but as we've progressed through evolution are no longer useful so have been turned off
These can be very similar to functional genes so can interfere with medical diagnosis

26

What are processed genes and how do they form?

Intron-less copies of other genes which are usually remote from the parent gene
Reverse transcription of spliced mRNA and reintegration into the genome

27

Do processed genes remain functional?

They occasionally remain functional (eg. PGK2 testis specific) but most are non functional

28

Roughly how many coding, short non-coding, long non-coding and pseudogenes do we have?

Coding - ~20,000
Short non coding - ~9000
Long non-coding - ~13,000
Pseudogenes - ~14,000

29

What is meant by interspersed repeats?

Those scattered around the genome

30

Where is satellite DNA found in chromosomes?

Large blocks are found in all chromosomes around the centromere
Also have heterochromatic chromosomal regions
Above simply refers to the fact that satellite DNA stains differently so is called heterochromatin (different to other chromatin) - heterochromatic regions are those made up of satellite DNA