Genome Flashcards

(61 cards)

1
Q

DNA genome size (nuclear)

A

3.2 X 10^9 bps

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2
Q

Mt DNA genome size

A

16,569 bps

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3
Q

Nuclear gene numbers

A

30,000 genes

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4
Q

Mt genome number of genes

A

37

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5
Q

Mt DNA

A

Only inherited from mother

haploid

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6
Q

Franklin X-ray images suggest that

A

DNA is double helix

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7
Q

Chargaff rules stated

A

A=T

G=C

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8
Q

2 nucleotides are held together by

A

Covenant bond between sugar if one nucleotide and phosphate group of another

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9
Q

2 strands are connected via

A

Hydrogen bonds

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10
Q

The 2 strands run

A

Anti parallel

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11
Q

Chromatin fibers are packed by

A

His tone proteins

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12
Q

The histone protein octamer complex is formed from

A

Histone protein dimers of H2A H2B H3 H4

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13
Q

The octamers bind and wrap the DNA around twice

A

To prevent the linear DNA from becoming a mess

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14
Q

Necleosomes are separated by

A

30 bp linker DNA

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15
Q

What protects the nucleosome from becoming a mess?

A

Histone H1 that binds to the linker DNA

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16
Q

Linear DNA packing with histone proteins and forming a supercoiled sister chromatid

A

occurs in metaphase stage

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17
Q

Metaphase chromosomes are used in

A

Karyotyping

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18
Q

Genomic DNA can be easily denatured by

A

Heating

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19
Q

DNA can be renatured by

A

Cooling

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20
Q

When a double stranded DNA in solution is heated

A

the double-stranded DNA starts

unwinding, and the Hydrogen bonds holding the two strands together starts breaking

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21
Q

Breaking a double-stranded DNA into single strands is known as

A

DNA denaturation

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22
Q

When a DNA solution is cooled down, complementary DNA strands can reform into double stranded DNA. This process is called

A

Renaturation

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23
Q

the G-C content of DNA is high

A

it needs higher temperature to even start denaturing

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24
Q

The temperature at which the DNA strands are half denatured is called

A

The melting temperature

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25
Melting temperature varies to each organism’s DNA based on their
G-C / A-T contents
26
Hybridization experiment is being done to identify
The DNA homology between two different organisms for a gene of interest
27
PCR is used to
amplify the target DNA sequences in large quantities
28
Coding genes
2% 64 Mb From genes to ➡️ proteins or RNA
29
Non-coding
98% 3136 Mb Repetitive or introns
30
Difference between eukaryotic gene and prokaryotic gene?
Eukaryotic genes have introns ( l2nha kbeera) Prokaryotic gene have no introns
31
Eukaryotic mRNA is
Monocistronic | 1 mRNA ➡️ 1 protein
32
Prokaryotic mRNA is
Polycistronic | 1 mRNA ➡️ 3 different proteins ( multiple proteins )
33
Non-coding genes
98%
34
Of the non-coding DNA, the repetitive DNA is
47% - DNA sequences that are repeated many times in the genome - Sequence repeats size can be from 1.0 to 100s of bases
35
Repetitive DNA can be
interspersed: 44% Tandem: 3%
36
Tandem are
Satellites
37
Satellite DNA
repeated many times in the genome but adjacent to each other
38
DNA repeat size ranges from
1.0 to 300 bases.
39
Satellite DNA are mostly located in the
heterochromatin regions: – Telomeres – Centromeres
40
Satellite DNAs (tandem repeats)
Identical/perfect TRs : AGCTG-AGCTG-AGCTG-AGCTG Degenerated/imperceptible TRs : AGCTG-TGCTG-AGGTG-AGCTG
41
Transposons : a type of interspersed
44% are dispersed throughout the genome. They able to move from one genomic location to another : transposition
42
2 types of transposons
DNA transposons | RNA transposons
43
DNA transposons
3%
44
RNA transposons (retrotransposons)
41%
45
RNA transposons are two types
– Long terminal repeat (LTR) transposons | – Non-LTR transposons
46
LTR
8%
47
Non-LTR
33%
48
Non-LTR can be classified into
* Long interspersed nuclear elements (LINES) | * Short interspersed nuclear elements (SINES)
49
LINES
20%
50
SINES
13%
51
DNA transposons move from one genomic location to another by
a cut-and-paste mechanism.
52
RNA transposons (retrotransposons) copy themselves into into
RNA by host RNA polymerase
53
RNA will be reverse transcribed into DNA by
transposon encoded reverse transcriptase
54
DNA will then be inserted to another genomic location by
transposons encoded integrase
55
One of the best studied transposons is
Alu elements (sequences)
56
Alu elements (sequences)
Belongs to SINES retrotransposons
57
Alu elements
about 300 base pairs in long
58
60% of genomic DNA contain
repetitive (47%) & miscellaneous sequences
59
40% of genomic DNA contain genes and related sequences
26% Introns 12% regulatory & conserved 2% Gene coding sequences
60
sequence differences were found to occur in the 41% of the retrotransposons
3.5%➡️4% of them
61
might have played a major role in Human evolution from Chipms by moving from one genomic location to another location.
RNA transposons