Rna & Transcription Flashcards

(48 cards)

1
Q

Mushroom poison

A

Amanita phalloides (the “death cap”).

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2
Q

These mushrooms contain the toxin

A

alpha amanitin.

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3
Q

sequence contains the genetic master plan. ‘ untouchable’

A

DNA

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4
Q

the “working copy” of the DNA.

A

RNA

by transcription

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5
Q

– 3 Major Types: mRNAs, rRNAs, tRNAs.
– Small RNA molecules:
• non-translated (non-coding - ncRNAs), snRNA, snoRNA, miRNA.
– Function
• protein-coding,structural,catalytic(Ribozymes), and regulatory.

A

Transcription Products

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6
Q
– Nucleotide polymer joined by
phosphodiester bonds.
– Considerably smaller than DNA.
– Exist as single strands.
– Contain ribose instead of deoxyribose.
– Contain uracil instead of thymine.
– They differ in size, function, and special structural shapes and modifications.
A

RNA characteristics

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7
Q

28S, 18S, 5.8S, and 5S.

A

Four rRNA species

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8
Q

which is related to the molecular weight and shape of the compound.]

A

“S”is the Svedberg unit

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9
Q

Together, rRNAs make up about

A

80% of the total RNA in the cell.

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10
Q

rRNA interacts with ribosomal proteins to form the

A

Ribosomes

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11
Q

Main function of rRNA is

A

mRNA Translation

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12
Q

The smallest of the 3 major types of RNA

A

tRNA

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13
Q

Make up about ___1___ the total RNA in the cell.

A

15%

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14
Q

tRNA contains

A

Modified bases

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15
Q

Forms secondary

A

and tertiary structures

tRNA

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16
Q

Main function of tRNA

A

mRNA decoding during translation.

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17
Q

There is at least one type of tRNA to transfer each of the

A

20 amino acids

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18
Q

Specific amino acid is covalently attached to its

A

3’ end

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19
Q

Most heterogeneous type of RNA in size and base sequence.

A

mRNA

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20
Q

It comprises about ___1___ of the total cellular RNA.

21
Q

Eukaryotic mRNA is

A

Monocistronic

22
Q

Monocistronic means that it

A

Carries information from just one gene.

23
Q

mRNA structural characteristics

A

– 5’ Cap
– Untranslated regions (UTR) at its 5’- and 3’- ends.
– 3’ Poly A tail

24
Q
  1. Chromatin structure remodeling to allow DNA access.
  2. Three RNA Polymerases for the synthesis of rRNA, tRNA, and mRNA.
  3. Transcription factors (TFs):regulatory proteins to initiate and regulate transcription.
A

Requirements for transcription of eukaryotic genes

25
Chromatin Remodeling affects the ability of the transcription machinery to access the DNA to be
transcribed
26
Relaxed form of DNA
Euchromatin
27
Most actively transcribed genes in
Euchromatin
28
Histone Acetyltransferase
HAT
29
HATs add acetyl group to
Lys
30
HATs add acetyl group to Lys —>
weak DNA/histone interaction | In, in euchromatin
31
Highly condensed chromatin
Heterochromatin
32
Most inactive segments of DNA
Heterochromatin
33
Histone Deacetylase
HDAC
34
HDAC removes acetyl group from Lys —>
strong DNA/histone interaction
35
RNA Pol I
Pre- rRNA: precursor of 28S, 18S, and 5.8S (in the | nucleolus)
36
RNA Pol II
mRNA and some ncRNA (snRNA, snoRNA, miRNA)
37
RNA Pol III
tRNA, 5S rRNA, some snRNA and snoRNA
38
Synthesis of all types of mtRNAs.
By One Mitochondrial RNA Polymerase
39
a region of DNA that initiates/promotes transcription of a particular gene.
Promoter
40
a region of DNA that initiates/promotes transcription of a particular gene.
DNA elements
41
– 25 nt upstream of the transcription start site (+1 nt).
• TATA or Hogness box
42
– 70 and 80 nucleotides upstream of the +1 nt.
CAAT Box
43
– Regulatory proteins that bind to DNA elements in promoters of RNA polymerase II genes.
Eukaryotic general transcription factors
44
CTF, SP1, TFIID.
Examples of TFs
45
– Assembly of the transcription initiation complex. | – Recruitment of RNA polymerases.
Function of TFs
46
Local unwinding of DNA caused by
RNA polymerase II
47
Local unwinding of DNA caused by RNA Pol II
and formation of an open initiation complex. | Transcription elongation
48
Alpha amanitin causes
``` -GI disturbances – Electrolyte imbalance – Fever – Liver and kidney dysfunction – 50-90% die within few days ```