GI Flashcards

1
Q

Give 9 functions of the stomach.

A
  • Store and mix food.
  • Regulate emptying into the duodenum.
  • Secrete proteases.
  • Dissolve and continue digestion.
  • Kill microbes.
  • Secrete intrinsic factor.
  • Activate proteases.
  • Lubrication.
  • Mucosal protection.
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2
Q

What are the 4 key cell types in the stomach?

A
  • Mucous cells.
  • Parietal cells.
  • Chief cells.
  • Enteroendocrine cells.
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3
Q

What is gastric acid? How much do we make a day?

A

Hydrochloric acid. We make ~2 litres/day.

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4
Q

Which 3 ions are needed for gastric acid secretion?

A

H+, Cl-, and K+.

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5
Q

Describe the cephalic phase of activating gastric acid secretion.

A
  • Stimulated by sight, smell, taste of food and chewing.
  • Parasympathetic nervous system.
  • Acetylcholine is released.
  • ACh acts directly on parietal cells, triggering gastrin and histamine release.
  • Gastrin and histamine stimulate parietal cells.
  • Therefore, increases acid production .
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6
Q

Describe the gastric phase of activating gastric acid secretion.

A
  • Gastric distension.
  • Presence of peptides and amino acids.
  • Gastrin released, acts on parietal cells, triggers histamine release.
  • Histamine then acts directly on parietal cells.
  • Therefore, increases acid production.
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7
Q

Describe how protein in the stomach has a role in activating gastric acid secretion.

A
  • Directly stimulates gastrin release.
  • Luminal proteins act as a buffer, mopping up H+, causing pH to rise.
  • Decreases somatostatin secretion.
  • Allows more parietal cell activity due to lack of inhibition.
  • Therefore, increases acid production.
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8
Q

Describe the gastric phase of deactivating gastric acid secretion.

A
  • Low luminal pH from high H+.
  • Low pH inhibits gastrin secretion.
  • Therefore, indirectly inhibits histamine release (via gastrin).
  • Low pH also stimulates somatostatin release, which inhibits parietal cell activity.
  • Therefore, decreases acid production.
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9
Q

Describe the intestinal phase of deactivating gastric acid secretion.

A
  • Duodenum has higher pH than the stomach at rest.
  • Gastric contents entering causes duodenum distension, lower luminal pH, hypertonic contents, and presence of amino acids and fatty acids.
  • This triggers the release of enterogastrones: secretin and cholecystokinin (CCK).
  • Secretin inhibits gastrin release, and promotes somatostatin release.
  • Short and long neural pathways which reduce ACh release.
  • Therefore, decreases acid production.
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10
Q

Give a simple list of facts about the regulation of gastric acid secretion.

A
  • Controlled by the brain, stomach, and duodenum.
  • 1 parasympathetic neurotransmitter (ACh = + acid).
  • 1 hormone (gastrin = + acid).
  • 2 paracrine factors (histamine = + acid, somatostatin = - acid).
  • 2 key enterogastrones (secretin and cholecystokinin = - acid).
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11
Q

What is an ulcer?

A

A breach in a mucosal surface.

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12
Q

Give 4 causes of an ulcer.

A
  • Helicobacter pylori infection.
  • Drugs (NSAIDs).
  • Chemical irritants (alcohol, bile salts, diet).
  • Gastrinoma (tumours of gastrin producing cells).
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13
Q

Where can peptic ulcers occur?

A

In the stomach, duodenum, and oesophagus.

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14
Q

Describe the two ways an ulcer can occur in terms of the mucosal attack/defences.

A

Increased mucosal attack, or decreased mucosal defences.

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15
Q

How does the gastric mucosa defend itself? Give 4 ways.

A
  • Alkaline bicarbonate-rich mucus, which forms a barrier between acid and epithelial cells.
  • Tight junctions between epithelial cells, prevent acid passing between cells to tissue below.
  • Replacement of damaged cells, occurs via stem cells in gastric pits.
  • Feedback loops, irritation causes surface mucous cells to produce more.
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16
Q

What is the purpose of intrinsic factor?

A

To bind to Vitamin B12 taken in in the diet, helping it to be absorbed in the terminal ileum.

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17
Q

What is the role of parietal cells?

A

Produce intrinsic factor and gastric acid.

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18
Q

What is the role of enteroendocrine cells?

A

Produce gastrin.

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19
Q

Describe how helicobacter pylori cause peptic ulcers.

A
  • Bacteria lives in gastric mucus.
  • Secretes urease, splitting urea into CO2 and ammonia.
  • Ammonia and H+ = ammonium.
  • Ammonium damages gastric epithelium.
  • Inflammatory response.
  • Reduced mucosal defence.
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20
Q

How do you treat patients with peptic ulcers from helicobacter pylori?

A
  • Eradicate the organism
  • Proton pump inhibitor.
  • 2 antibiotics from: clarithomycin, amoxicillin, tetracycline, and metronidazole.
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21
Q

Describe how NSAIDs cause peptic ulcers.

A
  • Non-steroidal anti-inflammatory drugs.
  • Cyclo-oxygenase 1 needed to synthesise prostoglandins.
  • NSAIDs inhibit COX-1, reducing prostoglandin synthesis.
  • Mucus secretion stimulated by prostoglandins.
  • Inhibits mucus secretion, and reduces mucosal defence.
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22
Q

How do you treat patients with peptic ulcers from NSAIDs?

A
  • Prostoglandin analogues e.g. misoprostol, to stimulate mucus secretion.
  • Reduce acid secretion.
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23
Q

Describe how bile salts can cause peptic ulcers.

A
  • Duodenal-gastric reflux.
  • Regurgitated bile strips away mucus layer.
  • Reduce mucosal defence.
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24
Q

What is the role of chief cells?

A

Produce pepsinogen (inactive form of pepsin).

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25
Q

Why is pepsinogen synthesised rather than pepsin?

A

Synthesised as a zymogen (in its inactive form), as proteases break down proteins, so if the cell made an active protease it would digest itself.

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26
Q

How is pepsinogen mediated?

A

By input from the enteric nervous system (acetycholine).

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27
Q

Describe the protease activation of pepsinogen -> pepsin.

A
  • Positive feedback loop.
  • Secretion parallel to HCl secretion.
  • HCl cleaves pepsinogen -> pepsin.
  • This pepsin breaks down pepsinogen -> more pepsin.
  • Most efficient at pH <2.
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28
Q

Describe the inactivation of pepsin.

A

Irreversible inactivation in duodenum by HCO3-.

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29
Q

Describe the role of pepsin in protein digestion.

A
  • Not essential, protein digestion can occur if the stomach is removed.
  • Accelerates protein digestion, and normally accounts for ~20% of total.
  • Breaks down collagen in meat, helps shred into smaller pieces = greater SA for digestion.
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30
Q

What is the volume of an empty stomach?

A

~ 50mL.

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31
Q

When eating, how much can the stomach accommodate with little increase in luminal pressure?

A

~ 1.5 L.

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32
Q

Give the 3 steps of gastric peristalsis.

A
  • Waves begin in gastric body (weak contractions, little mixing).
  • More powerful contractions in gastric antrum, pyloric sphincter closes as peristaltic wave reaches it.
  • Little chyme enters the duodenum, antral contents forced back towards the body -> mixing.
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33
Q

What is the normal frequency of peristaltic waves?

A

3/minute.

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34
Q

What determines the basic electrical rhythm of the peristaltic waves?

A

Pacemaker cells in the muscularis propria, called interstitial cells of cajal.

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35
Q

Describe the basic electrical rhythm of peristaltic waves, and what happens in an empty stomach.

A
  • Undergo slow depolarisation-repolarisation cycles.
  • Waves of depolarisation transmit through gap junctions to adjacent smooth muscle cells.
  • Do not cause significant contraction in an empty stomach.
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36
Q

Give 2 factors that increase the strength of peristaltic contractions.

A
  • Gastrin.
  • Gastric distension (mediated by mechanoreceptors).
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37
Q

Give 1 factor that decreases the strength of peristaltic contractions.

A
  • Duodenal distension.
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38
Q

Which has a larger capacity, the stomach or the duodenum?

A

The stomach.

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39
Q

What causes dumping syndrome?

A

Overfilling of the duodenum by a hypertonic solution.

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40
Q

Give 8 symptoms of dumping syndrome.

A
  • Vomiting.
  • Bloating.
  • Cramps.
  • Diarrhoea.
  • Dizziness.
  • Fatigue.
  • Weakness.
  • Sweating.
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41
Q

What is gastroparesis?

A

Delayed gastric emptying.

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42
Q

Give 9 causes of gastroparesis.

A
  • Idiopathic.
  • Autonomic neuropathies (e.g. in diabetes mellitus).
  • Drugs.
  • Abdominal surgery.
  • Parkinson’s disease.
  • Multiple sclerosis.
  • Scleroderma.
  • Amyloidosis.
  • Female gender.
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43
Q

Give 7 symptoms of gastroparesis.

A
  • Nausea.
  • Early satiety.
  • Vomiting undigested food.
  • GORD.
  • Abdominal pain.
  • Abdominal bloating.
  • Anorexia.
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44
Q

What is receptive relaxation?

A

Presence of food in stomach makes it relax, then it can stretch without increasing the pressure.

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45
Q

Which type of muscle in which parts of the stomach undergo receptive relaxation?

A

Smooth muscle in the body and the fundus.

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46
Q

How is receptive relaxation mediated/coordinated?

A
  • Mediated by parasympathetic nervous system, acting on enteric nerve plexuses.
  • Acetylcholine released, triggers nitric oxide and serotonin release by enteric nerves, which mediates relaxation.
  • Coordination controlled via the vagus nerve (CN X).
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47
Q

What are the 3 pairs of major salivary glands called?

A
  • Parotid.
  • Submandibular.
  • Sublingual.
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48
Q

What % of salivary flow are the major salivary glands responsible for?

A

80%.

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49
Q

Where can the minor salivary glands be found?

A

In the submucosa of oral mucosa e.g. lips, cheeks, hard and soft palate, tongue.

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50
Q

What % of salivary flow are the minor salivary glands responsible for?

A

20%.

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51
Q

Describe the general structure of salivary glands.

A

Composed of 2 epithelial tissues.
- Acinar cells, which sit around…
- Ducts
Have channels and transporters in the apical and basolateral membranes to enable fluid and electrolyte transport.

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52
Q

What are the 2 types of acini?

A

Serous acinus, and mucous acinus.

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53
Q

Describe serous acini.

A
  • Dark staining nucleus in basal 1/3.
  • Small central duct.
  • Secrete water and alpha amylase.
  • Tightly packed.
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54
Q

Describe mucous acini.

A
  • Pale staining (foamy).
  • Nucleus at base/edge of cell.
  • Large central duct.
  • Secrete mucous (water and glycoproteins).
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55
Q

Which type of acini are present in each of the 3 major pairs of salivary glands?

A

Parotid = serous acini.
Submandibular = mixed, aka seromucous acini.
Sublingual = mixed, but more mucous acini.

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56
Q

Describe the structure of ducts in the salivary glands.

A

Intralobular ducts -> main excretory duct.
Intralobular ducts = intercalated ducts and striated ducts.

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57
Q

Describe intercalated ducts.

A

Short, narrow duct segments, cuboidal cells that connect acini to larger, striated ducts.

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58
Q

Describe striated ducts.

A

Striped, major site for NaCl reabsorption, basal membrane folded into microvilli (for active transport of HCO3- against conc gradient), microvilli filled with mitochondria for energy to facilitate active transport.

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59
Q

What do ducts secrete, and reabsorb?

A

Secrete: K+ and HCO3-.
Reabsorb: Na+ and Cl-.

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60
Q

Describe the process from primary saliva to final saliva.

A

Primary = NaCl rich, isotonic plasma-like fluid, secreted by acini.
Epithelium of duct does not allow water movement.
Therefore, final saliva = hypotonic.

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61
Q

Describe the location of Stenson’s duct, and which of the major salivary glands it comes from.

A

Comes from the parotid gland.
Crosses the masseter, pierces the buccinator, and enters the oral cavity near the second upper molar.

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62
Q

Describe the parotid capsule.

A

Very tough.

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63
Q

Give 3 structures that pass through the parotid.

A
  • External carotid and its terminal branches.
  • Retromandibular vein.
  • Facial nerve and branches to muscles of facial expression.
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64
Q

Where can you find the parotid gland on physical examination?

A

Palpate a finger’s breadth below the zygomatic arch.

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65
Q

Describe the structure/location of the submandibular glands.

A

Two lobes separated by the mylohyoid muscle:
- Larger, superficial lobe
- Smaller, deep lobe (in floor of the mouth)

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66
Q

Describe the location of Wharton’s duct, and which of the major salivary glands it comes from.

A

Comes from the submandibular glands.
Empties into the oral cavity underneath the tongue.

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67
Q

Describe the location of the sublingual glands.

A

Between the mylohyoid muscle and the oral mucosa of the floor of the mouth.

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68
Q

Describe the duct system of the sublingual glands.

A

Has no large duct, instead drains into Wharton’s duct, and has small ducts that pierce the oral mucosa on floor of the mouth.

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69
Q

Describe the duct system of the minor salivary glands.

A

Lacks a branching network of draining ducts, each unit has its own simple duct.

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70
Q

Describe the locations in which the minor salivary glands are concentrated.

A

The buccal, labial, palatal, and lingual regions.

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71
Q

Give 3 other locations of minor salivary glands.

A
  • Superior pole of tonsils (Weber’s glands).
  • Tonsillar pillars.
  • Base of the tongue (von Ebner’s glands).
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72
Q

What is the flow rate of saliva?

A

0.3 -> 7ml per minute.

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73
Q

What is the daily salivary secretion in adults?

A

Between 800 -> 1500ml per day.

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74
Q

Give the pH range of saliva.

A

6.20 -> 7.40.

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75
Q

Give 8 factors that can affect the composition and amount of saliva produced.

A
  • Flow rate.
  • Circadian rhythm.
  • Type and size of gland.
  • Duration and type of stimulus.
  • Diet.
  • Medications/drugs.
  • Age.
  • Gender.
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76
Q

Give 4 functions of saliva.

A
  • Lubrication for mastication, swallowing, and speech.
  • Oral hygiene.
  • Maintenance of oral pH ~ 7.20, to prevent damage of tissues or teeth.
  • Digestive enzyme, dilutes food to allow taste.
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77
Q

Describe saliva’s role in oral hygiene/health.

A

Lubrication, mechanical cleaning, buffering salts, remineralisation, defensive and digestive function.

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78
Q

How does saliva maintain oral pH?

A

Bicarbonate/carbonate buffer system rapidly neutralises acids.

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79
Q

Describe oral defence and saliva’s role in it.

A

The mucosa = the physical barrier.
Palatine tonsils = immune surveillance and resistance to infection.
Salivary glands = wash away food particles that bacteria or viruses may use for metabolic support.

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80
Q

Which salivary glands are continuously active?

A

Submandibular, sublingual, and minor salivary glands.

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81
Q

Describe the composition of unstimulated saliva.

A

Dominated by submandibular components.

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82
Q

Describe the composition of stimulated saliva.

A

Resembles parotid secretion, the main component of this.

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83
Q

What is contained in ‘whole’ saliva?

A

Salivary gland secretions, blood, oral tissues, microorganisms, and food remnants.

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84
Q

What happens if salivary output falls? How much does it have to fall for this to occur?

A

Xerostomia (dry mouth).
Has to fall below 50% of normal flow.

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85
Q

What are some problems with xerostomia?

A

Low lubrication -> oral function becomes difficult.
Low (natural) oral hygiene -> poor pH control -> plaque accumulation, opportunistic infection (especially fungal e.g. candida = thrush).

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86
Q

What are the most common causes of xerostomia?

A

Medication, and irradiation for head/neck cancers.

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87
Q

Which 2 conditions may cause xerostomia?

A

Cystic fibrosis, or Sjorgens syndrome.

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88
Q

Describe how obstructive salivary gland diseases occur.

A

Saliva contains calcium and phosphate ions, these can form salivary calculi (stones) that can cause obstructions.

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89
Q

Where is obstructive salivary gland disease most often found?

A

In submandibular glands (80% cases).
Blocking duct at bend around mylohyoid, or at the exit of the sublingual papillae.

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90
Q

Describe how inflammatory salivary gland diseases occur.

A

Infection secondary to a blockage.

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91
Q

Which type of disease/illness/infection is mumps?

A

A viral infection.

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92
Q

Give 4 symptoms of mumps.

A
  • Fever.
  • Malaise.
  • Swelling of glands (especially parotid).
  • Pain especially over the parotid, as the tough capsule does not allow much enlargement.
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93
Q

What is the most common type/cause of salivary gland dysfunction to encounter?

A

Drug side effects. About 500 prescription drugs have a sympathomimetic effect (reduce salivary flow massively, or completely).

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94
Q

What % of salivary gland tumours (SGTs) are benign? What is the most common benign SGT?

A

80%. 65% of these are pleomorphic adenomas.

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95
Q

Describe the distribution of SGTs across the different salivary glands?

A

Parotid = 70% SGTs.
Submandibular = 10%.
Sublingual = less than 1%.
Minor glands = around 20%.

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96
Q

Are sublingual tumours almost always benign or malignant?

A

Malignant.

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97
Q

Describe the malignancy %s of SGTs in major vs minor glands.

A

In major glands, 20% = malignant.
In minor glands, 50% = malignant.

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98
Q

What can degenerative salivary gland diseases be a complication of?

A

Radiotherapy to the head/neck.

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99
Q

Name a degenerative salivary gland disease.

A

Sjogren’s syndrome.

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100
Q

Which group of people are mainly effected by Sjogren’s syndrome?

A

Post-menopausal women.

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101
Q

What other condition may be present alongside Sjogren’s syndrome?

A

Rheumatoid athritis.

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102
Q

Give 5 diseases/problems associated with metabolic problems.

A
  • Diabetes.
  • Increased BMI.
  • High cholesterol.
  • Malnutrition.
  • Absorption problems.
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103
Q

How is glucose produced and where in the body?

A

Breaking down carbohydrates = glucose, occurs in the intestines.

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104
Q

Where and how is glucose transported in the body?

A

Absorbed into the bloodstream after production, is transported to the liver and various other places such as muscle, the brain, RBCs and adipocytes.

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105
Q

Which hormone takes up glucose into the liver?

A

Insulin.

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106
Q

What can glucose be stored as in the liver?

A

Glycogen.

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107
Q

Explain the uses of glucose in the liver.

A
  • Some feeds into Acetyl CoA and Krebs’ cycle, makes energy (ATP).
  • Acetyl CoA can also be converted into triglycerides.
  • Triglycerides combine with proteins = VLDL (very low density lipoproteins).
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108
Q

Which hormone takes up glucose into muscle?

A

Insulin.

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109
Q

What can glucose be stored as in muscle?

A

Glycogen.

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110
Q

Describe the brain’s relationship with glucose.

A

Needs a constant supply of glucose from the bloodstream in order to have a constant supply of energy.

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111
Q

How is glucose stored in the brain?

A

It is not, the brain cannot store glucose.

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112
Q

How can glucose produce energy for the brain?

A

Glucose -> Acetyl CoA -> Krebs’ Cycle -> ATP.

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113
Q

How do RBCs utilise glucose?

A

To create a source energy, can’t make their own ATP as they have no mitochondria.
Instead, convert glucose -> pyruvate and lactate, which can be used as sources of energy.

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114
Q

Which hormone takes up glucose into adipocytes?

A

Insulin.

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115
Q

How is glucose utilised in adipocytes?

A

To produce ATP, or to be converted into triglycerides.

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116
Q

How are amino acids formed and when?

A

Proteins are digested, then broken down into amino acids, which can then go into the bloodstream.
There is constant backwards/forwards of protein and amino acid production.

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117
Q

What can amino acids be used for?

A
  • Make various compounds.
  • Can feed into Kreb’s cycle, and therefore ATP production.
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118
Q

How are triglycerides formed?

A

Fats taken in through the diet are broken down into triglycerides, which are transported through the bloodstream.

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119
Q

What can triglycerides be used for?

A
  • They are insoluble, so can combine with proteins.
  • Different combinations = different molecules, e.g. chylomicron (in the lymphatic system).
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120
Q

Describe what happens to the products of macronutrients during fed state.

A

Food and macronutrients digested are used as fuels, and oxidised into ATP. Any excess is stored as triglycerides in adipose tissue, or glycogen in the liver and muscle.

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121
Q

When we are not eating, what level needs to be maintained?

A

Blood glucose level.

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122
Q

How does our body respond to a short fast?

A

Glycogenolysis.
- If the body needs more glucose, glycogen is broken down back to it, and released into the bloodstream to maintain blood glucose level.
- Glucose mainly goes -> brain and RBCs, which need a constant supply, but also the rest of the body.
- Hormone that does this is glucagon.

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123
Q

How does our body respond to a longer fast?

A

Gluconeogenesis.
- When glycogen stores are used up, alternative source of glucose is needed.
- Amino acids, lactate fro RBCs, and glycerol from adipose tissue are used. These go to the liver, which uses them to create glucose to release into the bloodstream.
- Mainly for brain and RBCs.

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124
Q

Describe what happens to fats/triglycerides during fasting.

A

Lipolysis.
- Triglycerides in adipocytes can be broken down -> glycerol.
- Glycerol goes to the liver and is used to make glucose.
- Triglycerides also broken down to fatty acids, which are used by kidneys and muscle.
- Fatty acids can also go to the liver and make ketones, an alternative energy source to glucose.
- Glucagon is the hormone that promotes this process.

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125
Q

How does our body respond to prolonged fasting?

A

Ketogenesis.
- After 4/5 days = ‘starvation’ state.
- Gluconeogenesis decreased, as do not want to overuse amino acids, or necessary muscles will be broken down.
- Fatty acids still creating ketones, so decreased use of glucose necessary, as there is an alternative energy source for the brain.
- Brain uses ketones, keeps glucose available for RBCs which cannot used ketones.
- Muscle will use less ketones.

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126
Q

Name the 2 main hormones regulating fuel metabolism from the pancreas.

A

Insulin.
Glucagon.

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127
Q

Name the 3main hormones regulating fuel metabolism from the adrenal glands.

A

Cortisol.
Adrenaline.
Noradrenaline.

128
Q

Name the 1 main hormone regulating fuel metabolism from the thyroid gland.

A

Thyroxine.

129
Q

Name the 2 main hormones regulating fuel metabolism from the pituitary gland.

A

Growth hormone.
Somatostatin.

130
Q

Is insulin an anabolic or catabolic hormone? Why? Give examples.

A

Anabolic, as it builds complex molecules from numerous simple ones. E.g.
- Glycogen storage.
- Fat storage.
- Protein synthesis.

131
Q

Is glucagon an anabolic or catabolic hormone? Why? Give examples.

A

Catabolic, as it breaks down complex molecules into numerous simple ones. E.g.
- Glycogenesis.
- Gluconeogenesis.
- Ketogenesis.

132
Q

What does BMR stand for?

A

Basal metabolic rate.

133
Q

What does DIT stand for?

A

Diet induced thermogenesis (%).

134
Q

Describe energy balance in terms of weight gain/loss.

A

In energy in = energy out -> stable weight.
If in > out -> weight gain.
If in < out -> weight loss.

135
Q

Explain the role of the hormone leptin.

A

Suppresses appetite in normal weight.

136
Q

Explain a problem with the hormone leptin.

A

In obesity, high leptin levels cause leptin resistance, meaning appetite isn’t suppressed as it should be.

137
Q

Where is leptin produced, and what does it act on?

A

Produced from fat cells, acts on the brain.

138
Q

Explain the role of the hormone ghrelin.

A

Levels increase before meals and stimulate appetite.

139
Q

Explain a problem with the hormone ghrelin.

A

Too high levels = appetite is stimulated too much.

140
Q

Where is ghrelin produced, and what does it act on?

A

Produced in the stomach, acts on the brain.

141
Q

Give 7 functions of the liver.

A
  • Carbohydrate metabolism.
  • Fat metabolism.
  • Protein metabolism.
  • Hormone metabolism.
  • Toxin/drug metabolism and excretion.
  • Bilirubin metabolism and excretion.
  • Storage.
142
Q

Where can ferritin be found in the body?

A

In the cytoplasm of cells, mainly in the liver. Can also be found in blood serum.

143
Q

Describe ferritin’s structure.

A
  • Large spherical protein.
  • 24 noncovalently linked subunits, which form a shell around a central core.
  • Core contains up to 5000 iron atoms.
144
Q

Describe the relationship between concentration of ferritin and total body iron stores.

A

Directly proportional.

145
Q

What are the 2 types of cause of ferritin excess?

A

Excess iron storage disorders.
Non-iron overload disorders.

146
Q

Give 5 causes of excess iron storage ferritin excess.

A
  • Hereditary haemochromatosis.
  • Haemolytic anaemia.
  • Sideroblastic anaemia.
  • Multiple blood transfusions.
  • Iron replacement therapy.
147
Q

Give 3 causes of non-iron overload ferritin excess.

A
  • Liver disease.
  • Some malignancies.
  • Significant tissue destruction.
148
Q

What is the only known cause of low ferritin?

A

Iron deficiency.

149
Q

What can low ferritin result in?

A

Anaemia.

150
Q

What level of ferritin indicates depletion?

A

Less than 20 micrograms/L.

151
Q

What level of ferritin indicate a complete absence of stored iron?

A

Less than 12 microgams/L.

152
Q

Give 3 roles vitamins act as.

A
  • Gene activators.
  • Free-radical scavengers.
  • Coenzymes/cofactors in metabolic reactions.
153
Q

Which vitamins are water soluble?

A

Vitamins B and C.

154
Q

Which vitamins are fat soluble?

A

Vitamins A, D, E and K.

155
Q

Do we need a more regular intake of water soluble or fat soluble vitamins? Why?

A

Water soluble, as they pass more readily through the body.

156
Q

What do RDA and AI stand for?

A

RDA = recommended daily allowance.
AI = adequate intake.

157
Q

How do we take in vitamin A?

A

Ingest retinol directly from meat and dairy products, or produce it from carotenes.

158
Q

Give 4 functions of vitamin A.

A
  • Vision.
  • Reproduction.
  • Growth.
  • Stabilisation of cellular membranes.
159
Q

How is vitamin A involved in vision?

A

Used to form rhodopsin in rod cells in the retina.

160
Q

How is vitamin A involved in reproduction?

A

In males: spermatogenesis.
In females: prevention of foetal reabsorption.

161
Q

How common is vitamin A deficiency in affluent countries?

A

Rare, as levels only drop when liver stores are severely depleted.

162
Q

What can cause vitamin A deficiency?

A

Fat malabsorption.

163
Q

Give 3 clinical features of vitamin A deficiency.

A
  • Night blindness.
  • Xeropthalmia.
  • Blidness.
164
Q

Give 8 clinical features of acute vitamin A excess.

A
  • Abdo pain.
  • Nausea.
  • Vomiting.
  • Severe headaches.
  • Dizziness.
  • Sluggishness.
  • Irritability.
  • Desquamation of skin.
165
Q

Give 6 clinical features of chronic vitamin A excess.

A
  • Joint/bone pain.
  • Hair loss.
  • Lip dryness.
  • Anorexia.
  • Weight loss.
  • Hepatomegaly.
166
Q

Describe carotenemia.

A

Reversible yellowing of the skin due to high carotene levels.
Does not cause toxicity/vitamin A poisoning.

167
Q

Give 3 functions of vitamin D.

A
  • Increase intestinal absorption of calcium.
  • Reabsorption and formation of bone.
  • Reduce renal excretion of calcium.
168
Q

What occurs in vitamin D deficiency? In children? In adults?

A

Demineralisation of the bone.
Children = rickets.
Adults = osteomalacia.

169
Q

What is our main source of vitamin D?

A

Direct sunlight on the skin.

170
Q

Give 4 sources of vitamin E.

A

Spinach, carrots, nuts, and oil.

171
Q

Where can vitamin E be stored?

A

Non-adipose cells e.g. liver and plasma (labile and fixed pool).
Adipose cells (fixed pool).

172
Q

Give 3 causes of vitamin E deficiency.

A
  • Fat malabsorption (e.g. CF).
  • Premature infants.
  • Rare congenital defects in fat metabolism (e.g. abetalipoproteinaemia).
173
Q

Give 5 clinical manifestations of vitamin E deficiency.

A
  • Haemolytic anaemia.
  • Myopathy.
  • Retinopathy.
  • Ataxia.
  • Neuropathy.
174
Q

Discuss vitamin E excess.

A

Relatively safe in excess.

175
Q

How is vitamin K taken up and transported?

A

Rapidly taken up by the liver, then transferred to VLDLs and LDLs, which carry in into the plasma.

176
Q

Describe the body’s sources of vitamin K.

A

K1 = synthesised by plants and present in food.
K2 = synthesised in humans by intestinal bacteria.
K3 and K4 = synthetic.

177
Q

Give 2 functions of vitamin K.

A
  • Responsible for activation of some blood clotting factors.
  • Necessary for liver synthesis of plasma clotting factors II, VII, IX and X.
178
Q

How can the function of vitamin K be assessed?

A

By measuring prothrombin time.

179
Q

What can a deficiency of vitamin K cause?

A

Haemorrhagic disease of the newborn.

180
Q

How is haemorrhagic disease of the newborn prevented?

A

Vitamin K injection given to newborn babies.

181
Q

How common is vitamin K deficiency in adults?

A

Rare, unless on warfarin.

182
Q

Discuss excess of vitamin K.

A

Excess of K1 = relatively safe.
Excess of synthetic forms = more toxic.
Could result in oxidative damage, red cell fragility, and formation of methaemoglobin,

183
Q

Where do we get vitamin C?

A

Found in fresh fruit and vegetables.

184
Q

Give 3 functions of vitamin C.

A
  • Collagen synthesis.
  • Antioxidant.
  • Iron absorption.
185
Q

What is the disease that occurs with severe vitamin C deficiency? Give its symptoms.

A

Scurvy.
Symptoms include: easy bruising and bleeding, teeth and gum disease, hair loss.

186
Q

Describe treatment of scurvy and its effectiveness.

A

Treatment with vitamin C, improves symptoms quickly.
Joint pain = gone within 48 hrs.
Full recovery = within 2 weeks.

187
Q

Describe what can happen with an excess of vitamin C.

A

Doses of >1g/day can cause GI side effects.

188
Q

Give 4 sources of vitamin B12.

A

Meat, fish, eggs, and milk.

189
Q

Describe the release, transport, and storage process of vitamin B12.

A

Two active forms - methylcobalamin, and 5-deoxyadenosylcobalamin.
- Released from food by acid and enzymes in the stomach.
- Binds to R proteins to protect it from HCl.
- Released from R proteins by pancreatic polypeptide.
- Intrinsic factor needed for absorption, IF-B12 complex absorbed in terminal ileum.
- B12 stored in the liver.

190
Q

Give 3 causes of vitamin B12 deficiency.

A
  • Perinicious anaemia (autoimmune destruction of IF-producing cells in stomach).
  • Malabsorption: pancreatic disease, small bowel disease.
  • Veganism.
191
Q

Give 2 symptoms of vitamin B12 deficiency.

A
  • Macrocytic anaemia.
  • Peripheral neuropathy (in prolonged deficiency).
192
Q

What is macrocytic anaemia?

A

A blood disorder, when your bone marrow produces abnormally large red blood cells.

193
Q

How do we get folate?

A

From many foods fortified with folic acid e.g. cereal.

194
Q

Which group of the population has higher folate requirements?

A

Pregnant women.

195
Q

Give 3 causes of folate deficiency.

A
  • Malabsorption.
  • Drugs that interfere with folic acid metabolism.
  • Disease states that increase cell turnover e.g. psoriasis, leukaemia.
196
Q

Give 3 symptoms of folate deficiency.

A
  • High homocysteine levels.
  • Macrocytic anaemia.
  • Foetal development abnormalities e.g. NTDs.
197
Q

Give 3 ways of measuring the performance of the pathways of the coagulation cascade.

A
  • Prothrombin time.
  • International normalised ratio.
  • Activated partial thromboplastin time.
198
Q

What may a prolonged prothrombin time indicate?

A

A deficiency in synthetic capacity of the liver, however, not specific for liver disease.
Could also be:
- DIC (disseminated intravascular coagulation).
- Severe GI bleeding.
- Some drugs.
- Vitamin K deficiency.

199
Q

What are xenobiotics?

A

Foreign substances that do not have nutritional value.

200
Q

Give an example of something the body treats as xenobiotics.

A

Medications.

201
Q

What needs to happen to xenobiotics in the body?

A

Need to be changed into a safer form by detoxification.

202
Q

Where does detoxification occur?

A

Mostly in the liver, in the ER (particularly smooth ER). Some occurs in the lungs and small intestines.

203
Q

How many types of xenobiotic biotransformation reactions are there? What are these called?

A

2 types, named phase I and phase II reactions.

204
Q

What do xenobiotic biotransformation reactions do?

A

Make the compounds non-toxic and water-soluble.

205
Q

Give an example of a xenobiotic that can skip a phase I biotransformation reaction and go straight to phase II.

A

Paracetamol; combines with glucuronide, which is carried out by transferases.

206
Q

Give an example of a dietary component that can affect metabolism by the liver.

A

Grapefruit juice.

207
Q

Give an example of an inducer that affects clozapine metabolism by the liver.

A

Changes in smoking behaviour.
- Dose may need to increase if someone on clozapine takes up smoking.
- Levels increase after smoking cessation, so dose may need to be reduced to avoid drug toxicity.

208
Q

Give an opiate-based example of an active drug being converted into an active metabolite.

A

Codeine is de-methylated in the liver to morphine, via a phase I reaction.

209
Q

Give a benzodiazepines-based example of an active drug being converted into an active metabolite.

A

Diazepam is de-methylated in the liver to nordiazepam, via a phase I reaction.
Nordiazepam is hydroxylated to oxazepam, also phase I reaction.
Oxazepam is metaboliserd by conjugation, a phase II reaction, excreted without a phase I step.

210
Q

Give an example of an inactive drug being converted to an active agent in the liver.

A

Loratadine -> desloratadine.

211
Q

Where are microsomal enzymes located?

A

Smooth ER.
Liver, kidneys, lungs, intestinal mucosa.

212
Q

Where are non-microsomal enzymes located?

A

Cytoplasm and mitochondria.
Hepatocytes and other tissues.

213
Q

Are microsomal enzymes inducible?

A

Yes; by drugs, diet, environment, etc.

214
Q

Are non-microsomal enzymes inducible?

A

No, but they have polymorphism.

215
Q

Give 2 examples of microsomal enzymes.

A
  • Mono-oxgenates (CYPs).
  • UGTs.
216
Q

Give 4 examples of non-microsomal enzymes.

A
  • Protein oxidases, esterases, amidases, conugases.
217
Q

Which types of reactions are microsomal enzymes involved in?

A

Majority of biotransformation - oxidative, reductive, hydrolytic, and glucuronidation.

218
Q

Which types of reactions are non-microsomal enzymes involved in?

A

Non-specific enzymes, catalyse a number of reductive and hydrolytic reactions, as well as conjugation reactions (other than glucuronidation).

219
Q

Give an example of a xenobiotic metabolism which does not fit the category of phase I or phase II biotransformation reactions.

A

Ethanol metabolism.

220
Q

Give 3 functions of the colon.

A
  • Absorption of water and electrolytes (osmosis).
  • Excretion of waste (motility).
  • Production of vitamins/regulation of immune system (microbiome).
221
Q

How long is the colon in an adult?

A

~ 1.5m.

222
Q

Where does the majority of absorption occur in the colon?

A

The ascending colon and the first part part of the transverse colon.

223
Q

What can happen if the colon is much longer than usual?

A

Excessive -> redundant colon. Can lead to volvulus or constipation.

224
Q

Give the 6 layers of the colonic wall (lumen -> outward).

A
  • Mucosa.
  • Muscularis mucosae.
  • Submucosa.
  • Muscularis propria.
  • Subserosa.
  • Serosa.
225
Q

Describe the nerve supply of the colon.

A
226
Q

What are the 2 parts of the anal sphincter?

A

Internal anal sphincter and external anal sphincter.

227
Q

Describe the internal anal sphincter.

A
  • Continuation and thickening of rectal smooth muscle.
  • Involuntary.
  • Controlled by pelvic nerve.
228
Q

Describe the external anal sphincter.

A
  • Striated muscle, circular.
  • Voluntary.
229
Q

Give 2 important roles of the anal canal.

A
  • Maintaining continence.
  • Evacuating stool.
230
Q

Name the key pelvic floor muscle in supporting the anorectum.

A

Levator ani muscle.

231
Q

Describe the important aspect of the levator ani muscle.

A

The puborectalis: sling-like muscle, creates 90 degree angle when contracted, this promotes continence by effectively choking the lower rectum/external sphincter.

232
Q

Explain rectal compliance.

A

The ability of the rectum to store increasing quantities of stool without the pressure significantly changing.

233
Q

What are the four physiological phases of defecation?

A
  1. Basal.
  2. Pre-expulsive.
  3. Expulsive.
  4. Termination.
234
Q

Describe the basal phase of defecation (colon, rectum, anal sphincter, puborectalis).

A

Colon - segmental contractions (mixing and absoprtion).

Rectum - motor complexes (bursts of contraction, keeps the rectum empty, a braking mechanism).

Anal sphincter - tonic contraction.

Puborectalis - contracted (90 degree anorectal angle).

235
Q

Describe the pre-expulsive phase of defecation (colon, rectum, anal sphincter, puborectalis).

A

Colon - high amplitude propagating contraction. Mass movements of stool ~8 times/day (colon -> anorectum), gastro-colic reflex.

Rectum - filling causes distension, rectal compliance.

Anal sphincter - external stays contracted, internal relaxes temporarily for stool sampling.

Puborectalis - remains contracted.

236
Q

Describe the expulsive phase of defecation (rectum, anal sphincter, puborectalis).

A

Rectum contracts.

Internal and external sphincters relax.

Puborectalis relaxes.

Valsalva manoeuvre.

237
Q

Describe the termination phase of defecation.

A

Traction loss causes sudden contraction of the external sphincter (closing reflex).

Valsalva ceases.

Change in posture to standing.

238
Q

Define constipation in terms of frequency of stools.

A

<3 stools per week.

239
Q

Give 2 conditions that can lead to slow bowel. What else could cause constipation?

A
  • Hypothyroidism.
  • Diabetes.

Physical blockages such as tumours.

240
Q

What type of disorders may cause obstructive defecation?

A

Pelvic floor disorders, such as issues with anal sphincter’s function.

241
Q

Give 4 diagnostic tests that can be used involving the process of defecation.

A
  • Colonic transit study.
  • Defecating proctogram.
  • Endo-anal ultrasound.
  • Anorectal manometry.
242
Q

Describe a colonic transit study.

A

Swallow 1 capsule for 3 days containing barium sulphate markers, x-ray later, see how many are left. Normal study = almost all gone.

243
Q

Describe a defecating proctogram.

A

Insert barium paste into back passage, x-ray to assess anatomy of anal sphincter and surrounding pelvic floor before bearing down, and then as they try to evacuate the paste.

244
Q

Describe an anorectal manometry.

A

Passing a prove to assess pressure of anal sphincter muscle at rest, and bearing down. There are 256 sensors.

245
Q

What is an endo-anal ultrasound looking for?

A

Circular muscle of the internal and external anal sphincters to be of uniform thickness, and complete rings.

246
Q

What is faecal incontinence?

A

Involuntary passage of stool.

247
Q

Give 4 lifestyle factors that can cause loose stool.

A

Too much:
- Fibre.
- Caffeine.
- Alcohol.
- Spicy foods.

248
Q

What condition may cause reduced rectal capacity?

A

Crohn’s disease.

249
Q

Give 3 groups of medications that can cause loose stools.

A
  • Laxatives.
  • Antibiotics.
  • NSAIDs.
250
Q

Describe the makeup of an amino acid.

A
  • Amino group.
  • Carboxyl group.
  • Carbon backbone.
251
Q

Where do humans get their main source of nitrogen?

A

From dietary proteins.

252
Q

Where do humans have their main loss of nitrogen?

A

From the gut and kidneys (as urea).

253
Q

How does our body get amino acids?

A

Some synthesised de novo.
Others termed ‘essential’ as they must be found in the diet.

254
Q

Discuss the acidity/basicity/neutrality of amino acids.

A

Can be acidic, basic or neutral.

255
Q

Give an example of a conditionally essential amino acid, and explain why.

A

Tyrosine can be made from phenylalanine, if someones diet has sufficient phenylalanine they will not need tyrosine in their diet, but if they do not - tyrosine becomes essential.

256
Q

What are amino acids?

A

Building blocks of proteins and peptides.

257
Q

What affect does essential amino acid deficiency have on nitrogen balance?

A

Leads to negative nitrogen balance, as if they are not getting an essential amino acid from their diet, it will have to come from a pre-existing protein.

258
Q

Give 5 essential amino acids.

A
  • Phenylalanine.
  • Valine.
  • Leucine.
  • Isoleucine.
  • Tryptophan.
259
Q

Give 5 conditionally essential amino acids.

A
  • Cysteine.
  • Glycine.
  • Glutamine.
  • Proline.
  • Tyrosine.
260
Q

Give 5 non-essential amino acids.

A
  • Alanine.
  • Glutamate.
  • Aspartate.
  • Asparagine.
  • Serine.
261
Q

What is a glucogenic amino acid?

A

An amino acid that produces gluconeogenic intermediates to produce glucose.

262
Q

What is a ketogenic amino acid?

A

An amino acid that produces acetyl CoA for ketone bodysynthesis.

263
Q

Which 2 amino acids are solely ketogenic?

A
  • Leucine.
  • Lysine.
264
Q

How do amino acids bind to one another?

A

Peptide bonds: C-terminus of one joins N-terminus of another.

265
Q

Discuss classification of dipeptides, polypeptides and proteins.

A

Dipeptides = 2 amino acids with a peptide bond.

Polypeptides = number of amino acids with peptide bonds.

Proteins = one or more polypeptides, generally around 50 amino acid residues.

266
Q

Describe the 3 main fates of amino acids.

A
  1. Can be incorporated ‘as is’ with other amino acids -> peptides and proteins.
  2. Modified to form other biomolecules e.g. nucleotide bases and neurotransmitters.
  3. Amino group removed and carbon backbone reutilised for energy.
267
Q

How are amino acids stored in the body?

A

They are not. Any ingested amino acids must be used.

268
Q

Give 3 example of positive nitrogen balance.

A
  • Pregnancy.
  • Lactation.
  • Anabolic steroids/bodybuilder.
269
Q

Give 3 examples of negative nitrogen balance.

A
  • Severe illness/sepsis/trauma.
  • Essential amino acid deficiency.
  • Brain injury.
270
Q

Discuss GI proteolysis.

A

Diet includes some free amino acids, but majority are obtained from dietary protein. Dietary proteins are broken down sequentially in the GI tract to eventually produce amino acids.

271
Q

Which type of cell allows absorption of free amino acids, small peptides and (occasionally) dietary proteins into the portal circulation?

A

Enterocytes.

272
Q

Which organ creates more circulating proteins (not immunoglobulins)?

A

The liver.

273
Q

Give 6 important hepatic proteins.

A
  • Albumin
  • Coagulation factors.
  • IGF-1.
  • C-reactive protein.
  • Carrier proteins e.g. caeruloplasmin.
  • Adolipoproteins.
274
Q

Which hepatic protein is perhaps the most important, and why?

A

Albumin.
- Responsible for maintaining oncotic presure in blood.
- Important carrier of: sex hormones, magnesium, calcium, drugs, etc.

275
Q

Give 3 non-protein derivatives of glycine.

A
  • Heme.
  • Creatinine.
  • Purine bases.
276
Q

Give 2 non-protein derivatives of aspartate.

A
  • Purine bases.
  • Pyrimidine bases.
277
Q

Give 1 non-protein derivative or arginine.

A
  • Nitric oxide.
278
Q

Give 2 non-protein derivatives of tryptophan.

A
  • Serotonin.
  • Melotonin.
279
Q

Give 4 non-protein derivatives of tyrosine.

A
  • Dopamine.
  • Catecholamines.
  • Thyroid hormones.
  • Melanin.
280
Q

What are the catecholamines?

A

Neurohormones that enable fight or flight response to environmental stimuli.

281
Q

Are all amino acid degradative pathways the same length?

A

No, they can vary massively.

282
Q

Describe transamination reactions.

A

Amino groups are removed from amino acids and transferred to acceptor keto-acids to generate the amino acid version of the keto-acid and the keto-acid version of the original amino acid.

283
Q

Name the ketoacid and amino acid that often form one of the ketoacid/amino acid pairs in transamination reactions.

A

a-ketoglutarate and glutamate.

284
Q

Are transamination reactions reversible?

A

Yes, by aminotransferase.

285
Q

Describe cystinosis.

A

-Autosomal recessive genetic condition.
- 1/200,000 chance.
- Defect in transporter leads to a cystine accumulation in tissue lysosomes.
- Eye and kidney problems.

286
Q

Give 1 amino acid that can be synthesised from pyruvate.

A

Alanine.

287
Q

Give 2 amino acids that can be synthesised from oxaloacetate.

A
  • Aspartate.
  • Asparagine.
288
Q

Give 4 amino acids that can be synthesised from alpha-ketoglutarate.

A
  • Glutamate.
  • Glutamine.
  • Proline.
  • Arginine.
289
Q

Give 3 amino acids that can be synthesised from 3-phosphoglycerate.

A
  • Glycine.
  • Serine.
  • Cysteine.
290
Q

Give 1 amino acid which can be synthesised from phosphoenolpyruvate + ethryos-4-P.

A

Tyrosine.

291
Q

What is the lifespan of crystallin?

A

The life of organism.

292
Q

What is the lifespan of haemoglobin?

A

The life of RBC.

293
Q

What is the half life of ornithine decarboxylase?

A

11 minutes.

294
Q

What are the 2 main means or protein degradation?

A
  • Proteasome (ubiquitin dependent).
  • Lysosome.
295
Q

What is ubiquitin?

A

A small protein, known as the ‘mark of death’.

296
Q

How does ubiquitin work?

A

Carboxyl group forms isopeptide bond with multiple lysine residues.

297
Q

What are the 3 enzymes involved in ubiquitin binding?

A

E1: ubiquitin-activating.
E2: ubiquitin-conjugating.
E3: ubiquitin-protein ligase.

298
Q

At what point does the ubiquitin signal for death become significantly strong?

A

Formation of a ubiquitin chain made up of more than 4 ubiquitins.

299
Q

Which structures regulate which proteins may enter the proteasome for destruction?

A

The caps.

300
Q

Explain the N-terminal rule.

A
  • The amino acid at the N-terminal determines a proteins half-life.
  • There are stabilising N-terminal residues and destabilising ones.
  • Stabilising = longer half-life.
  • Destabilising = shorter half-life.
301
Q

Give 3 stabilising N-terminal residues.

A
  • Alanine.
  • Cysteine.
  • Glycine.
302
Q

Give 3 destabilising N-terminal residues.

A
  • Lysine.
  • Leucine.
  • Tyrosine.
303
Q

Do lysosomes only break down proteins?

A

No, they can break down a range of things.

304
Q

What are the 2 non-selective protein degradation methods of lysosomes?

A
  • Macroautophagy.
  • Microautophagy.
305
Q

Name the selective protein degradation method of lysosomes?

A

Chaperone-mediated autophagy.

306
Q

What do lysosomes use endocytosis and phagocytosis for?

A

Extracellular substances, for example when there is an infection.

307
Q

Name 5 key players in amino acid catabolism.

A
  • Alanine (AA).
  • Glutamine (AA).
  • Cortisol.
  • Glucagon.
  • Branched-chain amino acids (BCAAs).
308
Q

Give 7 core clinical problems with proteins synthesis in the liver.

A
  • Oedema.
  • Abdominal mass.
  • Burns.
  • Bleeding.
  • Haematemesis.
  • Rectal bleeding.
  • Enlarged liver/ hepatomegaly.
309
Q

Give 6 causes of hypoalbuminaema.

A
  • Inflammation.
  • Liver disease.
  • Renal disease.
  • Burns/trauma.
  • Sepsis.
  • Malnutrition.
310
Q

Give 3 consequences of hypoalbuminaemia.

A
  • Oedema.
  • Effusions.
  • Carrier protein (may need to adjust for this).
311
Q

Give 5 core clinical problems with the urea cycle.

A
  • Confusion/delirium.
  • Loss of consciousness/coma.
  • Seizure.
  • Deterioration of intellect.
  • Learning difficulty.
312
Q

Discuss ammonia derived from amino acids.

A
  • Extremely toxic.
  • Converted to non-toxic urea for urinary excretion.
  • Any that evades detoxification as urea, is incorporated into glutamine by glutamine synthetase.
313
Q

Describe the presentation of severe ammonia toxicity.

A
  • Decerebrate posturing (legs extended, internally rotated, arms straight down sides).
  • Doll’s eyes movements (vestibular-ocular reflex).
314
Q

Describe the presentation of OTC deficiency.

A
  • Late onset.
  • Very variable.
  • Triad: encephalopathy, respiratory alkalosis, hyperammonaemia.
315
Q

Give 7 treatments for urea cycle problems/ hyperammonaemia.

A
  • Avoidance of catabolism.
  • Induction of anabolism.
  • Low dietary protein -> decrease ammonia.
  • Haemofiltration.
  • Liver transplanation.
  • Umbilical vein hepatocyte transfusion.
  • Gene therapy.