higher biology metabolism and survival Flashcards
A metabolic pathway is
A series of chemical reactions occurring in a cell
Metabolism
All the chemical reactions taking place in a cell
Making and breaking chemical bonds involves
Energy
Anabolic reactions
Make more complex structures so require energy
Catabolic reactions
Break bonds so energy is released
Anabolic and catabolic reactions
Anabolic build up, catabolic break down
Metabolic pathways can have
Irreversible and reversible steps and alternative routes
What affects the rate at which a metabolic pathway proceeds
The presence or absence of particular enzymes
What affects a metabolic pathway as a whole
Th regulation of the rate of the reaction of key enzymes within the pathway
Regulation is achieved by
Intercellular and extra cellular signal molecules
Genes for some enzymes are _________ expressed
Continuously
The membrane system is essential for
Transport both within cells and between cells
What are embedded and dispersed in the phospholipid bilayer of a membrane?
Proteins that vary in both structure and function
Channel (pore) proteins
Allow specific molecules and ions to pass through the membrane
Carrier pump proteins
Bibs to specific molecules or ions temporarily to carry them through the membrane and this involves a change to its conformation which may need use of ATP (active transport)
Sodium potassium pump where carriers play a duel role
Each carrier pumps out 3 sodium from the cell and pumps 2 potassium into the cell create a difference in potential allowing nerve impulses to function properly
Enzymes in the membrane
Proteins in the membrane that catalyse a reaction
Membranes can form compartments to
To localise metabolic activity of the cell
Mitochondrian membranes
Outer membrane separates it from the rest of the cell contents and a folded inner membrane provides a large surface area for reactions to take place along
Another double structure membrane
The chloroplast
Activation energy
The energy needed to allow a reaction to occur
Effect of enzyme use on activation energy
Activation energy is lowered
The active site allows the enzyme to (3 things)
Orientate reactions, lower the activation energy of the transition state, release products with low affinity for the active site
The induced fit model
The active site is complementary to a substrate molecule and when the substrate molecule enters the active site, the active site changes shape making a reaction more likely to occur as the substrate molecule is under more tension
The rate of an enzyme catalysed reaction is affected by:
- the concentration of the enzyme
- the concentration of the substrate
- the concentration of the end product
Some enzymes act in groups or as
Multi-enzyme complexes
Inhibitors
Reduce the rate of enzyme activity
A competitive inhibitor
Resembles the shape and size of the substrate, binds to the active site of the enzyme, blocking the entry of the real substrate, slowing the rate of reaction
The inhibitor is diluted when
The substrate concentration continues to increase
If the inhibitor is diluted
The enzyme will bind the real substrate more often
V max
Maximum activity of an enzyme
A non-competitive inhibitor
Binds to another part of the enzyme away from the active site causing the shape of the enzyme and its active site to change so the substrate can no longer bind
When a non-competitive inhibitor is used
An enzyme will never reach its V max because some of the enzyme molecules are inactive
Feedback inhibition (final product inhibition)
Final product may act as an inhibitor to reduce the activity of the enzyme at the start of pathway
Benefit of feedback inhibition
Prevents the cell from wasting energy synthesising a product that they already have in excess
Where is ATP found
In living cells
How does the cell form ATP and use ATP
Cell uses energy from respiration to form ATP and ATP can be broken down to release energy when the cell needs it
The formation of ATP
Cell uses energy from respiration to add an inorganic phosphate to ADP allowing the cell to store the energy released from respiration
What carry out the the breakdown of ATP to ADP
Enzymes
Uses of ATP
Used to transfer energy to synthetic pathways (amino acids to protein) and to other cellular processes which require energy (active transport/mitosis)
Phosphorylation
An enzyme controlled process which adds a phosphate group to a molecule e.g. ADP + Pi -> ATP
It is also when a phosphate group is transferred from ATP to a molecule of a reactant to make it more reactive
Glycolysis summary
Occurs in the cytoplasm, glucose uses 2 ATP for phosphorylation to get to intermediate 1, 2 ATP are then used to go to intermediate 2 and then intermediate 2 creates 4 ATP as it goes to a pyruvate
Intermediate 1 can either
Enter other metabolic pathways or carry on in respiration
Energy investment and energy pay-off
Energy investment occurs as 2 ATP are used up for phosphorylation from glucose to intermediate 2, energy pay-off occurs as from intermediate 2 to pyruvate, 4 ATP are made, this means the net total of ATP produced from glycolysis is 2
Dehydrogenase enzymes
Release hydrogen ions and high energy electrons from glucose
H ions and electrons become bound to
Coenzymes which act as hydrogen acceptors and carriers
Coenzyme and example
A non-protein part which assists the functioning of an enzyme e.g. NAD
NAD in glycolysis
Hydrogen is attached to it causing it to become reduced and making it NADH, this happens in glycolysis from intermediate 2 to glucose with 2 NAD
Where does the citric acid cycle take place
The matrix in the mitochondria
How does the citric acid cycle begin
If oxygen is present the pyruvate diffuse into the matrix
Citric acid cycle summary
Pyruvate is broken down into an acetyl group which becomes attached to coenzyme A forming acetyl coenzyme A, hydrogen ions and electrons become attached to the coenzyme NAD to form NADH. Acetyl coenzyme A combines with oxaloacetate to form citrate
Hydrogen ions and electrons in citric acid cycle
They are released and attach to either NAD or fad which forms FADH2
CO2 in citric acid cycle
Diffuses out of the cell as a waste product and is expired by breathing out
Alternative respiratory substrates
Starch (plants) and glycogen (animals)
Alternative intermediates of glycolysis
Other sugar molecules, proteins, fats
The electron transport chain is a
Collection of proteins attached to the mitochondrial inner membrane
Electron transport chain summary
NADH and FADH2 release the high energy electrons to the electron transport chain where they pass along the protein chain, releasing energy, this energy is used to pump H ions across the membrane, the enzyme ATP synthase then uses the flow of hydrogen ions to make ATP from ADP+Pi
The final electron acceptor
Is oxygen as at the end of the chain, electrons and hydrogen combine with oxygen to form water
Anaerobic respiration
During this process sugar is only partially broken down and very little energy is released, this reaction is reversible since there is no loss of carbons (CO2)
Fermentation
Glucose -> pyruvate -> ethanol and CO2
This reaction is irreversible as there is a loss of carbons as CO2 is released
Metabolic rate of an organism
The quantity of energy (ATP) consumed per unit time
Metabolic rate can be measured by: (3 things)
Oxygen consumption per unit time, carbon dioxide produced per unit time and energy production (increase in temperature) per unit time
Direct calorimetry
Measures heat production directly, subject is placed in an insulated chamber and the temperature rise of a known water mass is calculated
Most efficient method of measuring energy expenditure
Energy (calories) = mass of water (g) times temperature change (degrees Celsius)
High tech respirometers to measure metabolic rate
They can track the temperature, oxygen concentration and CO2 concentration in real time using probes linked to computers
Measuring fitness
Maximum oxygen uptake of a person is called VO2 max and the higher the value of this the greater the aerobic fitness of the individual
Oxygen delivery and classes of animals
Organisms with high metabolic rate require an efficient delivery of oxygen, the physiology of the heart chambers and circulation is different in different classes of animals in order to support oxygen demands
Fish hearts and the single circulatory system
Contain two main chambers, an atrium and ventricle, and blood makes a single circuit through fish, it is pumped from the ventricle to the gills where it is oxygenated, the heart must provide enough blood pr sure to pump it round the whole body
Disadvantage of single circulatory system
The Gill capillaries offer too much resistance to blood flow so blood pressure is slowed down
Amphibian hearts and incomplete double circulatory system
Their hearts have two atria and one ventricle, the right atrium receives deoxygenated blood from the body while the left atrium receives oxygenated blood from the lungs, the ventricle is undivided
Ventricle in amphibians
Deoxygenated and oxygenated blood remain mostly separate by the arrangement of vessels leaving the heart
Ventricle in reptiles
Single ventricle is partly separated by a septum which limits mixing of blood
Amphibian lungs
Small thin-walled sacs with no alveoli, relative surface area for gas exchange is small, they normally exchange gases through their skin and mouth only using their lungs during vigorous activity
Mammal and reptile lungs
System of branching tubes which end in alveoli
Alveoli structural features
Many alveoli greatly increase surface area increasing the quantity of gas exchanged, the alveoli are thin-walled allowing a fast diffusion rate, the inner walls are moist allowing oxygen to dissolve and diffuse easily
Birds and lungs
High metabolic rate meaning they have a high oxygen demand for flight, they have developed two large air sacs on either sides of lungs, these move air unidirectional oh through the breathing system acting as bellows
Oxygen concentration at sea level is
20%