HIV Flashcards
(114 cards)
What are examples of human retroviruses?
Retriviral DNA exists in human genome as product of evolution. Does not produce infectious virus
Family - retrovirus Sub-family - orthoretrovirinae Genus - lentivirus Species - HIV1 HIV2 - West Africa, less virulent
Family - retrovirus
Sub-family - orthoretrovirinae
Genus - deltavirus
Species - HTLV1/ HTLV2 - West Indies/ Japan.
Also known has tropical spastic paraparesis. T- cell leukaemia
What is structure of HIV virus
GP41/ GP120 envelope glycoproteins
Lipid mebrane - host derived
Matrix protein p17
Single stranded RNA
RT
Integrase
Virion core proteins - p7, p9, p 24
HIV nuclear material is two copies of positive sense SS RNA.
It codes for virion proteins/ regulatory proteins.
What virion proteins does it code for?
LTR
gag
pol
env
HIV nuclear material is two copies of positive sense SS RNA.
It codes for virion proteins/ regulatory proteins.
What regulatory proteins does it code for?
nef
rev
tat
vif
vpr
vpu
What do these HIV virion proteins code for?
LTR
gag
pol
env
LTR - long terminal repeat promotes transcription/ replication
gag - virion core proteins -
- p7
- p9
- p17 - matrix
- p24 - nucleocapsid
pol - RT, integrase, protease
env - gp160 glyocprotein which is cleaved into gp120 and gp41
gp 41 and gp 120 formed from env gene.
What are their roles?
gp 120 - attachment protein
gp 41 - fusion protein
What do these HIV regulatory proteins code for?
nef
rev
tat
nef - negative regulatory factor - important for virulence
rev - promote export viral RNA from nucleus
tat - transactivator protein regulates viral transcription
What do these HIV regulatory proteins code for?
vif
vpr
vpu
What do these HIV regulatory proteins code for?
vif - virion infectivity factor
vpr - weak transcriptional activator
vpu - for efficient budding
What is replication cycle of HIV?
Absorption of HIV gp120 onto CD4 cell Fusion via GP41 Penetration Uncoating Reverse transcription of positive sense ssRNA into DNA Integration into host DNA - now provirus
Transcription of viral mRNA and progeny RNA
Translation of viral proteins
Assembly of virions
Budding via envelope proteins
HIV also binds to dendritic cells/ macrophages, which transport to lymph nodes, which helps spread infection to other CD4 cells
Most CD4 cells die. Only few survive to continue HIV virion production
HIV-2 confined to West Africa, originally zoonosis from sooty mangabeys
HIV-1 has different groups, what are they?
During transmission from chimpanzees, groups evolved.
M - major. 90% of cases, worldwide distribution. Emerged between 1910-1930 in West Africa
N - new. West Africa. Very rare
O - outlier. West Africa
P - only one case ever
HIV1 group M (major), has further subtypes, based on geographical spread. What are they?
Subtype A: Central and East Africa, Eastern Europe
Subtype B: West and Central Europe, the Americas, Australia, South America, and several southeast Asian countries (Thailand, and Japan), as well as northern Africa and the Middle East. Most common in UK
Subtype C: Sub-Saharan Africa, India, and Brazil.
Subtype D: North Africa and the Middle East.
Subtype F: South and southeast Asia.
Subtype G: West and Central Africa.
Subtypes H, J, and K: Africa and the Middle East
CRF - circulating recombinant types, due to recombination between different subtypes
HIV virus uses gp120 to bind to CD4 receptor on which cell types?
T-helper cell Monocyte Dendritic cell Langerhans cell Microglia
HIV virus binds gp120 to CD4. What other receptors are required for entry?
chemokine co-receptor CCR5 absolutely required
CXCR4 co-receptor is also desired by virus
If CCR5 gene deletion, host can be resistant to HIV progression- elite controllers 0.3%.
Once infected Th rests in lymphoid tissue, it can continue to produce new virions. If Th cell becomes activated, cell will die.
What is immune response to HIV infection?
CD8 T cells which kill infected cells
B cells produce antibodies directed towards infected cells
CD4 Th cells directly killed by virus, undergo apoptosis, damaged by CD8/ B cells
As Th count decreases, immune response wanes, and HIV load rises
Why does having another STI increase risk of HIV transmission?
Other STIs cause genital ulcers/ discharge, which can provide route for HIV transmission
Uncircumcised males more likely to be affected
What are transmission routes of HIV?
Blood transfusion - haemophiliacs
IVDU/ tattoo/ accupuncture/ needlestick
Sex
Vertical - up to 50% of HIV mothers will pass on to children (if untreated). Avoid breast-feeding, perform C-section
What are initial symptoms of HIV infection?
fever
malaise
maculopapular rash
lymphadenopathy
Can invade CNS and cause self-limiting aseptic meningitis
After initial HIV exposure, what tests can be used to diagnose HIV, and when are they used in timeline?
Can also perform genome sequencing to assess antiretroviral drug resistance and tropism (CCR5/ CXCR4)
p24 antigen - 1-8 weeks after exposure, then levels will drop as Ab produced
HIV antibody - 4 weeks 95% will test positive. If negative, can check up to 12 weeks after exposure
Diagnosis is infants is difficult as passively acquired IgG will be detected up to 12 months after birth. Test infant at various intervals from 12-24 months
Tests available:
p24 antigen
HIV RNA
HIV proviral DNA - check mother will always remain positive
HIV antibody
Point-of-care tests - less sensitive/ specific
How is HIV viral load measured?
RT-PCR of HIV RNA
AIDS is when:
- patient with HIV antibodies
- develops opportunistic infections (usually CD4 <200)
What are viral opportunistic infectious?
CMV - retina, brain, GI
HSV - lungs, GI, CNS, skin
JC - brain PML
EBV - hairy leukoplakia, primary cerebral lymphoma
HHV8 - Kaposi sarcoma
AIDS is when:
- patient with HIV antibodies
- develops opportunistic infections (usually CD4 <200)
What are bacterial opportunistic infectious?
Mycobacterium tuberculosis - disseminated/ extrapulmonary
Mycobacterium avium
Salmonella dissemninated
Also higher risk of common bacterial pathogens - streptococcus/ haemophilus
AIDS is when:
- patient with HIV antibodies
- develops opportunistic infections (usually CD4 <200)
What are protozoal/ fungal opportunistic infectious?
Cryptococcus neofromans - CNS
Coccidioides
Histoplamosis
PCP
Toxoplasma
Cryptosporidium
Isospora
What are ways to reduce HIV spread?
Combatting HIV/ AIDS was 6th Millenium Development Goal
Change sexual behaviours - condoms
Pregnant women start ART after first trimester
Treat other STIs
Clean needles
Blood product screening
HIV transmission can be explained via R0 equation. What are factors in this?
R0 >1 epidemic spread can occur
R0 <1 infection will eliminate
R0 is proportional to C x beta x D
C - is the average rate of contact between susceptible and infected
individuals
beta - transmissibility - probability of HIV transmission per given exposure e.g anal intercourse has 1.65 % risk transmission
D - duration of infectious period