Introduction to microbiology Flashcards

(40 cards)

1
Q

What are the 5 groups of microbes?

A

-Parasites (Protozoa and Helminths)
-Fungi
-Bacteria
-Viruses
-Prions

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2
Q

Give 3 examples of how microbes interact with hosts and cause disease

A

-Structural and molecular makeup
-Biochemical and metabolic strategies
-Reproductive processes

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3
Q

Comparison of microbes (table)

A
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4
Q

Macroparasites vs Microparasites

A
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5
Q

How are microbes classified?

A

-Microbes are divided into related groups based on similar characteristics
-All microbes (except viruses) are named according to the binomial Linnean system (genus and species)

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6
Q

What characteristics of bacteria are used for classification?

A

Morphological:
-nature of cell wall
-staining
-shape (cocci/ball, bacilli/rods, spirochetes/spirals)
-spore forming abilities

Biochemical:
-Metabolism (bacterial growth is affected by oxygen depending on their energy generating system
-Production of specific enzymes or toxins

More recently:
-DNA sequencing of their genome

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7
Q

What characteristics of viruses are used for classification?

A

-Type of nucleic acid (DNA/RNA)
-Number of strands of nucleic acid (ss/ds) & their physical construction (e.g.
segmented)
* Polarity of viral genome (e.g. positive or negative strand RNA)
* Symmetry of nucleocapsid
* Lipid envelope (presence or absence)

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8
Q

Which microbes are eukaryotes and prokaryotes?

A

Eukaryote:
-Fungi and parasites (protozoa and helminths)

Prokaryotic:
-Bacteria

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9
Q

What are Helminths (parasite)?

A

-Multicellular worms that infest many organs of the body, most commonly
the GI tract
-Many have complex life cycles that progress from egg to larva to adult
-Transmission can be:
-Direct through swallowing infective stages/larvae penetrating the skin
-Indirect via intermediate non-human hosts
-Most serious helminth infections are caused by TAPEWORMS (e.g. Taenia solium) and FLUKES (e.g. Schistosoma mansoni)

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10
Q

What are Protozoa (parasite)?

A

-Protozoa are single cell organisms
-Life cycle includes a metabolically active growth stage (trophozoite)
and a dormant stage (cyst).
-May be free-living or life cycle may require one or more hosts
-Infections acquired through ingestion of contaminated water, food or
via insect vectors
-Examples of common diseases caused by protozoa:
* Malaria (Plasmodium spp.)
* Toxoplasmosis (Toxoplasma gondii)
* Leishmaniasis (Leishmania spp.)

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11
Q

What are fungi

A

-Fungi grow as single cell (yeasts), branched filaments (hyphae) or both (dimorphic fungi). In filamentous fungi the mass of hyphae forms a mycelium
-Fungi have a thick cell wall composed primarily of chitin, as opposed to bacterial cell walls, which are composed of peptidoglycan
-Species causing disease may be acquired from the environment or occur as part of the normal flora

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12
Q

Common fungal diseases (familiarise nit memorise)

A
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13
Q

Essential and non-essential components of bacteria

A

Essential:
-Cell wall
-Plasma membrane
-Ribosome
-Nucleoid

Non-essential:
-Capsule
-Flagella
-Pili
-Plasmid
-Spore

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14
Q

Describe the structure of bacteria cell wall

A

-Cell wall is a multilayered structure mainly composed of peptidoglycan (also known as mucopeptide or murein)
-Peptidoglycan is a polymer composed of the hexose sugars N-acetylglucosamine and N-
acetylmuramic acid (glycan chain) and amino acids (tetrapeptide chain)

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15
Q

Why do bacteria stain differently?

A

-Peptidoglycan layer in gram positive bacteria is thicker
-Due to thin peptidoglycan layer, gram negative bacteria don’t retain
primary staining
-They become pink with Safranin counter stain

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16
Q

Summary of gram positive vs gram negative cell wall

A
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17
Q

Which bacteria can’t be seen with gram stain and why?

A

Acid fast bacteria
-They have an outer layer of complex waxy lipids (e.g. mycolic acid) which can’t be penetrated by dyes in gram stain
-Ziehl-Neelsen (ZN) stain used instead

18
Q

What is the capsule in bacteria?

A

-Gelatinous layer outside cell wall
mainly composed of polysaccharide
(sugars)
-Determinant of virulence
(antiphagocytic)
-Helps bacterial adherence to human tissues
-Antigenic; can be component of
vaccine
-Used for identification and lab
diagnosis: swelling reaction

19
Q

What is the flagella in bacteria?

A

-Organ of motility
* Flagellated bacteria have a
characteristic fixed number and
location of flagella
-Plays a role in pathogenesis
-Used for identification and lab
diagnosis

20
Q

What are Pili (fimbriae) in bacteria?

A

-Hair-like filaments that extend from cell
surface
-Thinner and shorter than flagella
-Two main functions:
-Attachment (ordinary pili/fimbriae)
-Conjugation (sex pili)

21
Q

What are plasmids in bacteria?

A

-Additional extra-chromosomal genetic material
-Mostly circular dsDNA
-Capable of self-replication
-Can contain antibiotic resistance genes
-Transmissible by conjugation, transduction or transformation

22
Q

What are spores in bacteria?

A

-Only produced by some Gram-positive bacteria (Bacillus and Clostridium species)
-Highly resistant structures formed in response to adverse conditions
-Contain bacterial DNA surrounded by a thick keratin-like coat that confers resistance to
heat, chemicals and drying

23
Q

What is the medical importance of spores?

24
Q

What are the distinguishing characteristics of viruses?

A

-Viruses are intracellular parasites
-They contain either DNA or RNA genomes comprised of novel genetic material encoding structural and functional proteins needed for self
perpetuation
-New virus particles are formed by assembly of components synthesised using host cell proteins

25
What cell functions are required for viral propagation?
-Machinery for translation of viral mRNAs -Enzymes for replication of genome and assembly of new virions -Transport pathways to reach the sites of replication, viral assembly -Energy source
26
Essential and non-essential components of viruses
Essential: -DNA or RNA genome (never both) -Capside core -Polymerase protein Non-essential: -Envelope
27
What are capsids in viruses?
-Capsids are constructed from a small number of virally-encoded protein subunits called capsomeres -The viral genome enclosed by the capsid protein coat is called nucleocapsid (core)
28
What 3 types of symmetry do virus particles show?
-Icosahedral (e.g. adeno, herpes) -Helical (e.g. orthomyxo, paramyxo) -Complex (e.g. poxviridae)
29
Describe the icosahedral capsid
-Capsid is composed of 20 solid equilateral triangles arranged around the face of a sphere -The simplest icosahedral capsid is made by 3 identical subunits to form each face, so the minimum number of subunits in an icosahedral capsid is 60 (20x3) -The structural units may be composed of more than one viral protein
30
Describe the helical capsid
-Capsomeres are bound in a periodic fashion to the viral genome, thus winding the genome into a helix -Among human viruses, this symmetry only occurs in RNA viruses
31
Describe the complex capsid
-The capsid is neither purely helical nor purely icosahedral -Poxviruses are the only human viruses with this symmetry (e.g. smallpox virus) -The nucleocapsid is a continuous cylinder surrounded by a lipid layer and complex proteinaceous core wall (pallisade layer)
32
Describe the viral envelope in viruses
-Lipid bilayer is derived from the host cell membrane -Not present in all viruses -Contains viral glycoproteins (spikes) that project from the membrane -Interaction between the capsid and envelope is mediated by the viral matrix protein -Determines the stability of virions outside the host and correlates with mode of transmission: enveloped or non-enveloped
33
Enveloped vs Non-enveloped viruses
-Non-enveloped (naked) viruses are stable in the environment -They may be transmitted by food or water (e.g noroviruses) -Enveloped viruses often survive only transiently outside host and infectious viruses do not persist in the environment (e.g.HIV)
34
What is the importance of viral surface proteins?
-Attach to membrane proteins (Receptors) in host cell – Determinants of tropism -Target for antibodies - Neutralization -Determinants of antibody specificity (serotype)
35
What are the basic steps of viral replication?
1a) Attachment 1b) Entry 2) Uncoating 3-5) Production of viral proteins and replication of viral genome 6) Assembly 7) Release
36
What is the principle of gene expression and replication?
-Viral protein synthesis is completely dependent on cellular translation machinery (ribosomes) -Thus all viral genomes must produce mRNA to express the viral proteins
37
How is viral mRNA produced?
-The route to produce viral mRNA depends on genome structure of each virus -Viral mRNA is produced by transcribing the genome with host or viral RNA polymerase
38
How do DNA genomes undergo gene replication?
-Large viruses (pox-, herpes-) encode many of the enzymes they need (e.g. DNA-dependent RNA polymerase) and are more “autonomous” -Small viruses (e.g., papilloma-) use host cell enzymes
39
How do RNA genomes undergo gene replication?
-Most examples encode their own RNA-dependent RNA polymerase, which uses a complementary RNA as template (positive -> negative or negative -> positive)
40
How do retroviruses undergo gene replication?
-Use reverse transcriptase to copy a positive ssRNA genome into dsDNA -This serves as the template for protein and new genome synthesis