K3 - key papers Flashcards

(35 cards)

1
Q

describe papers evidencing that AB plaque levels do not correspond to cognitive decline

A

Katzman 1988: no strong correlation between plaque severity and cognitive decline; some individuals have many plaques [PET] without memory impairment

  • 137 care home residents, 55% have AD
  • 10 subjects had cognitive performance in upper 20% and also showed pathology of AD with many plaques
  • maybe started with larger brains so had larger cognitive reserve of neurons? but point stands, separate AD from plaques

also: Fagan 2009: PET study of 189 cognitive normal patients from 43-89 yo had no correlation between bran/CSF amyloid + psychometric test performance

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2
Q

first familial analysis of PD?

A

Polymeropoulos 1996
- contursi family, every patient but 1 had markers in chromosome 4
- multipoint linkage analysism markers 4q21-4q23 identified as PD phenotype
- 10% of family members had it
- SNCA was mapped to here, sequenced and found A53T change
- supported by SNCA triplication studies related to EOPD [Singleton 2003]

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3
Q

what is the prevalence of SNCA mutations in PD?

A
  • seen in both monogenic and sporadic forms that a-syn is in LBs
  • common SNCA risk variants present in ~40% Europeans, odds ratio ~1.3
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4
Q

what is evidence for PFFs seeding?

A

Chandra 2004:
- injection of PFFs into rodents -> behavioural dysfunction + SNc neurodegeneration

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5
Q

what did Periquet 2007 find?

A

a-syn variants without the NAC domain form no aggregates and are not toxic in drosophila model
- then expressed truncated a-syn which enhanced aggregation and neurotoxicity

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6
Q

describe Luk 2012 re. prion-like spread

A
  • cultured exogenous a-syn injected nto striatum of WT mice
  • converted their endogenous soluble counterparts into fibrils when internalised by neurons
  • a-syn spreads to anatomically connected regions i.e. SNc develops LBs but not VTA
  • accompanied by DAN loss, suggests good model
  • only very few templates needed
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7
Q

what is evidence that endogenous a-syn is key to aggregation?

A

Kim 2019
* when a-syn KO mice exposed to a-syn fibrils, leads to no LBs, or impairment of synapses or neuronal connectivity
Flierl 2014
* in cells that are already pathological, use lentiviral vector carrying shRNA to downregulate SNCA in SNCA-Tri neuronal precursor cells
* reverses phenotypic intracell changes in metabolism + growth caused by PD
* though, unphysiological, NPCs subjected to forms of metabolic stress to get them to uptake shRNA

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8
Q

what is evidence that SNCA as well as a-syn is important in normal function?

A
  • reduction in SNCA in rat can cause DAN loss + reduce cell viability
  • need to maintain physiological SNCA but decrease misfolded a-syn: just stopping SNCA is a blunt instrument
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9
Q

what is the evidence that autophagy protects against neurotoxicity?

A
  • Fussi 2018: if silence ATG5 and inhibit the autophagosome, you protect from neurotoxicity, as you increase the exocytosis pathway
  • in cultued neurons w SNCA-OVX from adenoviral transduction + silencing with siRNA
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10
Q

what is evidence that type of a-syn mutation affects aggregation?

conway 2000

A

Conway 2000:
* familial PD’s A53T + A30P mutations accelerate formation of oligomers but inhibit further conversion of fibrils
* in vitro: A30P has limited vesicle binding so its availability may be higher in vivo, shown to suppress autophagy

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11
Q

what are other genes implicated in a-syn aggregation?

A

LRRK2: Chen 2012
* LRRK2 may phosphorylate MKKs upstream of MAPKs
* G2019S mutation of LRRK2 causes gain of function, overphosphorylation, overactivation of cell death pathway
* leads to DAN degeneration in mouse NSc
* though is induced mouse model - mice can’t get PD

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12
Q

what is evidence for PINK-1 and Parkin coinvolvement in a-syn pathology?

A

**Park 2006 **: if PINK-1 is KO’d, can reduce the effect by overexpressing Parkin
- PINK-1 builds up if mitochondria damaged, gets activated on mitochondrail surface, phosphorylates parkin
- parkin, activated by CaMKII, causes Uq ligase activity on mitochondria, tags it for degradation
- also UQs synaptojanin-1 -> vesicle recycling (iPSC studies)
- Uq is connected to relevant PD functions

**PINK-1 initiates signal for mitophagy, Parkin amplifies it **

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13
Q

what was the first large GWAS of PD?

A

2009: Simon-Sanchez
- 5000 white patients, 9000 controls
- exchanged data w Toda 2009, asian GWAS
- also found SNCA, but not MAPT

many GWAS loci are close to ‘monogenic’ PD genes: LRRK2, GBA, VPS13C
- rare coding variants here have high effect size, most common variants just increase risk

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14
Q

describe the age-at-onset GWAS of PD

A

Blauwendraat 2019:
* 28000 patients
* GBA + SNCA assocaited with younger onset
* MAPT + RAB29 associated with older

some pathways accelerate the underlying PD process? EOPD related to SNCA?

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15
Q

how was LRRK2 discovered to be linked to familial PD?

A

Zimprich 2004
* sequenced region of chromosome 12 in 46 families
* mutations of gene encoding LRRK2
* postmortem carriers showed DAN degenerative with diverse pathologies incl tau + a-syn
* LRRK2 is central to the pathogenesis of several major ND disorders

also implicated in sporadic PD:
* GWAS: 13,700 cases, 98,000 controls, LRRK2 among top suceptibility genes

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16
Q

what is function of Tau in healthy brain?

A

primarily stabilizes microtubules, neuronal internal scaffolding, ensuring proper transport of nutrients and other essential materials

17
Q

what is the involvement of the protein degradation pathway in AD?

A
  • defects in autophagy observed due to reduced expression of componenets
  • results in decreased lysosomal activity, incr conc Uq protein and disruption of key signalling pathways
  • Tau can cause endosomal defects in uptake and leakage, therefore aggregates need to be removed
18
Q

what are some potential Tau targeting therapies?

A
  • clinical efficacy yet to be established but multiple trials are ongoing
  • usually immunotherapies for IC or EC, EC targeting alone likely to be less effective
  • target Tau using: kinase inhibitors/phosphatase activators (PP2), to reduce tau hyperphosph
  • or use caspase inhibitors to reduce cleavage (which promotes tau assembly + secretion and organelle dysfunction): minocycline + VX-765 have shown +ve results
  • small molecule inhibitors of aggregation to NFTs: prevent/reverse aggregation to avoid changes in gene expression + synaptic loss seen w larger NFTs
19
Q

what did Israel 2012 show?

A
  • used iPSC-derived human purified neurons from familial (APPDp) and sporadic (sAD) patients
  • observed sig. incr of AB, activated GSK-3B and p-tau vs control
  • treatment w b-secretase inhibitors partially rescued the activated GSK-3B and p-tau, suggesting causative role for APP processing pathway, if not APP itself, in tau phosph
20
Q

how have genetic studies highlighted the role of inflammation in AD?

A

AD: GWAS strongly + unbiasedly implicate immune-related genes + cell types + inflamm pathways [Jansen]

shifts understanding of sporadic AD pathogenesis by highloight immune component

21
Q

what is evidence for a-syn overexpression affecting DA release?

A

Janezic et al 2013
* SNCA-OVX BAC transgenic mice have early, region-specific DA release deficits + altered vesicle distribution in axons
* independent of aggregation

22
Q

where have sporadic risk genes for AD been found?

A

genes in APP processing: ADAM10, APH1B
- deposition of AB is a definitive pathological feature of sporadic AD

23
Q

what happened with Doody’s 2013 and 2015 studies of y-secretase inhibitors for AD treatment?

A
  • semagacestat tested in 2 large RCTs phase III in mild-moderate AD
  • terminated both as ineffective or worsened decline, and also caused skin cancer
24
Q

what happened with Gilman 2005’s anti-AB42 vaccine trial?

A

phase II in patients, RCT, placebo, n =372. 20% had antibody response. of the 8 who died after having vaccine, had lower AB load vs control, age matched

CSF tau decreased in responders vs placebo (smaller sample size)

halted due to safety concerns (meningoencephalitis)

did not show significant cognitive benefits or dementia ratings

25
what happened with Farlow 2012's study of humanised mAbs in AD?
solanezumb phase II trial * increased AB plasma in dose-dependent fashion, consistent with clearance of plaques in brain * no effect on cognition [ADAS-Cog scale] * when trialled phase III, found some reduction in cognitive decline on ADAS-Cog14, when results pooled from phase 2 and 3 also found this, but only by 2 points on 80 pt scale: relevant?? being used too late? trialled it in earlier stage, no reduction either
26
explain van dyck's 2022 trial of lecanamab
- data over 18 months phase 3, 1795 people w early AD, during covid, so a few missed doses, delayed assessments etc. high dropout rate 17.2%. did not impute missing values - assessed occurrences of amyloid-related imaging abnormalities - dementia score on CDR-SB (cogn + func) only increased by 1.21 (Drug) compared to 1.66 (non-drug) from 3.2. p<0.001 - however how meaningful is slowing of decline?
27
what is evidence for soluble AB peptides being largely responsible for AD?
* soluble bioactive oligomers are seen in cell culture, APP mouse brains + AD postmortem tissue * **Hsia 1999**: neuroanatomical + behavioural changes appear before visible plaques * in hAPP mice, conc of soluble AB better correlates with severity of disease than plaques do . mice develop cognitive loss before plaques (but show little neuronal loss) * soluble oligomers acutely impair synaptic function in slice cultures
28
which neurons are affected in AD?
* cholinergic neurons: hence cholinergics for treatment * neurons expressing ApoE4 variant are more susceptible
29
how is ApoE4 involved in AD risk?
Lin 2018: CRISP/Cas9 used to insert ApoE4 into iPSCs from WT ApoE3 patients: isogenic paired controls * ApoE4 leaves brain vulnerable to neurodegeneration * examine microglia, astrocytes, neurons in culture + cerebral organoids * ApoE4 has changed cell function, used RNAseq to track differences in expression vs ApoE3 * in neurons: secrete more AB, exhibit higher mEPSC freqs, elevated p-Tau * in astrocytes: way more cholesterol, reduced AB uptake * in microglia: reduced phagocytosis of AB and AB plaques iPSCs w ApoE4 changed to ApoE3 using CRISPR -> improvements in many measures
30
what are papers detailing involvement of mitophagy in AD?
**Fang 2019**: mitophagy reduces AB + T + memory impairment in AD mice, AB + T inhibit mitophagy **Du 2017**: PINK-1-OVX promotes clearing of mitochondrial damage, deficient PINK-1 mice have elevated AB + impaired memory **Khandelwal 2011**: lentiviral PRKN expression in APP + Tau OVX mice -> decrease AB + increased mitophagy
31
what are the 3 proposals for Tau-AB interaction?
1. AB + T synergistically target cells/organelles 2. AB drives hyperphosph of Tau [Gotz 2004 - APP transgenic mice have NFTs, Tau mice have no plaques] 3. Tau drives toxicity of AB [Rapoport 2002 - Tau-deficient neurons resist AB toxicity]
32
how many loci for AD have been identified in European populations? what are the caveats to this?
2 recent GWAS have expanded sample size (1.1 mill & 788k), 75 loci found [Wrightman 2021, Bellenguez 2022] * european only * sample overlap, not independent * Wrightman largely expanded sample size by increasing controls * Bellenguez by increasing cases: more statistical power to detect variants * alos included cases from UK Biobank but when removed them findings were consistent
33
describe gene prioritisation study
gene prioritisation: 62 causal genes * some of these involved in macrophages, highlights importance of microglial clearance integrated GWAS w myeloid epigenomic + transcriptomic data * causal gene = RABEP1? [Novikova 2021] * also seen in Chinese study [Cao 2024], -> brain atrophy * but integrated studies with different cell preparations and isolation protocols , falase +ves, need paired data to validate findings
34
what studies provide evidence for the amyloid cascade hypothesis?
genetic risk factors: * APP: Tanzi 1997 via reverse genetics + oligonucletoide probes: chromosome 21 * PSEN1L 4 FAD families studied, found no APP link, found PSEN1 [Sherrington 1995] mutations in 42:40 ratio due to y-secretase, differential cleavage legnths leads to AB population more prone to aggregation
35
what studies provide genetic evidence against amyloid cascade?
* if AB overload alone leads to AD, would expect LoF in proteases to increase AD risk, not the case, suggests minor role for AB * PSEN1 mutations ccan cause no change in AB42 load, or actually decrease it