Key slides Flashcards

(146 cards)

1
Q

Biology of cells key slides

What procedures is used to isolate DNA fragments of different lengths?

A

Gel electrophoresis

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2
Q

Biology of cells key slides

Which form of microscope can image living cells?

A

Light microscope

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3
Q

Biology of cells key slides

Most commonly used microscopy stain and what it does

A

Haematoxylin and eosin

Haematoxylin - stains nuclei blue

Eosin - stains everything else pink

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4
Q

Biology of cells key slides

Which type of microscope can be used with fleorescent markers?

A

Confocal

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5
Q

Biology of cells key slides

What does a confocal miscroscope require?

A

Lasers of various output wavelengths

A scanning mechanism

Light detectors and amplifiers

Computer with substantial processing power

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6
Q

Biology of cells key slides

Pros of using fluorescent proteins

A

Bright

Non-toxic

Passed to further generations

Protein expression can be controlled

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7
Q

Biology of cells key slides

Which type of electron microscopy builds up a 3D image?

A

Scanning electron microscope

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8
Q

Biology of cells key slides

Which type of electron microscope gives very fine detail?

A

Transmission electron microscope

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9
Q

Biology of cells key slides

Cytoplasm

A

Semi-fluid matrix

Is the cytosol and the stuff in it

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10
Q

Biology of cells key slides

Bacteria and archaea are…

  • Prokaryotes
  • Eukaryotes
A

Prokaryotes

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11
Q

Biology of cells key slides

What are the ancient prokaryotes that are often adapted to living in extreme environments called?

A

Archaea

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12
Q

Biology of cells key slides

What makes the rough ER rough?

A

The ribosomes in the surface

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13
Q

Biology of cells key slides

What is the role of ribosomes?

A

Site of protein synthesis

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14
Q

Biology of cells key slides

Roles of the rough ER

A

Protein synsthesis

Protein modification (chemically)

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15
Q

Biology of cells key slides

Roles of golgi body

A

Receives proteins from the ER

Modifies these proteins

Packages and transports proteins in secretory vesicles to other destinations

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16
Q

Biology of cells key slides

Lysosomes

A

Hydrolytic enzymes

Formed by budding from the endomembrane system

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17
Q

Biology of cells key slides

What do lysosomes breakdown?

A

Proteins

Lipids

Nucleic acids

Carbs

Old/damaged organelle

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18
Q

Biology of cells key slides

What in our cells has its own DNA?

A

Mitochondria

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19
Q

Biology of cells key slides

Roles of the cytoskeleton

A

Supports shape of cell

Anchors organelles

Acts as tracks for motor proteins

Interacts with extracellular structures to anchor the cell

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20
Q

Biology of cells key slides

What are the 3 protein fibres in the cytoskeleton?

A

Intermediate filament

Microtubule

Actin filament

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21
Q

Biology of cells key slides

Is the cytoskeleton rigid?

A

No

The protein fibres spontaneously assemble and reassemble

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22
Q

Biology of cells key slides

What are the 4 overlapping stages of the origin of life?

A
  1. Nucleotides and amino acids produced prior to existence of cells
  2. Nucleotides and amino acids become polymerised to form DNA, RNA and proteins
  3. Polymers become enclosed in membranes
  4. Polymers with membranes acquired cellular properties
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23
Q

Biology of cells key slides

Protobiont

A

Aggregate of prebiotically produced molecules and macromolecules

Acquired a boundry that allows it to maintain an internal chemical environment distinct from its surroundings

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24
Q

Biology of cells key slides

What is the importance of having a boundry such as a lipid bilayer?

A

Allows the cells to control its internal environment

Stop its surroundings controlling it

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25
# Biology of cells key slides What are the 3 key RNA functions?
Store information Capacity for self-replication Enzymatic function
26
# Biology of cells key slides Chemical selection
Chemical within a mixture has properties that make it become more abundant than other chemicals
27
# Biology of cells key slides Hypothesised 2 step scenario that led to RNA becoming early life genetic material
1. RNA molecule mutates and gains enzymatic ability to attach nucleotides together and replicate faster 2. Another mutation produces enzymatic function to synthesise nucleotides and make it self-reliant
28
# Biology of cells key slides Advantages of DNA over RNA
Less likely to suffer mutations Lets RNA get on with other functions as DNA takes over informational role
29
# Biology of cells key slides What are the 5 large mass extinctions?
Ordovician Devonian Permian Triassic Cretaceous
30
# Biology of cells key slides What is a symbiotic relationship?
When two species live in direct contact and aid the other
31
# Biology of cells key slides What is a endosymbiotic relationship?
One organsism lives inside the other
32
# Biology of cells key slides Evolution definition
Heritable change in one or more characteristics of a population or species from one generation to the next
33
# Biology of cells key slides Microevolution
Changes in a single gene in a population over time
34
# Biology of cells key slides Macroevolution
Formation of new species or groups of species
35
# Biology of cells key slides Natural selection basic concepts
Mutation arises in a population Some alleles encode proteins that enhances an individual's survival capability These individuals are more likely to survive and contribute their genes to the gene pool of the next generation Over many generations the frequencies of different alleles change This alters the characteristics of the population
36
# Biology of cells key slides Genotype
Genetic composition of an individual
37
# Biology of cells key slides Phenotype
Characteristics that are the results of gene expression
38
# Biology of cells key slides Wild type allele
Most common allele in population Encodes for normally function protein in the correct amount
39
# Biology of cells key slides Mutant alleles
Alleles altered by mutation Tend to be rare in populations Tend to be defective in their ability to express a functional protein Occasionally results in a better protein than the wild type allele
40
# Biology of cells key slides Stages of cell cycle
G1 - First gap S - DNA synthesis G2 - Second gap M - Mitosis
41
# Biology of cells key slides Overview of mitosis
42
# Biology of cells key slides Types of chromosomal mutations
43
# Biology of cells key slides What type of cell shape is this?
Bacillus
44
# Biology of cells key slides What type of cell shape is this?
Coccus
45
# Biology of cells key slides What type of cell shape is this?
Spirochete
46
# Biology of cells key slides What type of cell shape is this?
Vibrio
47
# Biology of cells key slides What is essential in maintaing the rod shape of cells?
MreB
48
# Biology of cells key slides What does a depletion of MreB cause?
Cells that should be rod shaped become cocci shaped
49
# Biology of cells key slides How do bacteria reproduce?
Binary fission
50
# Microbiology Gram positive cell wall structure
51
# Microbiology Gram negative cell wall structure
54
# Microbiology The gram negative bacteria's unique outer membrane of the cell wall is called?
Lipopolysaccharide layer (LPS)
55
# Microbiology What's unique about the LPS layer?
It is made up of lipopolysaccharides instead of the standard phospholipid molecules
56
# Microbiology Role of the LPS layer
Acts as a major barrier to the outside world Offers protection against antiseptics and antibiotics Acts as an endotoxin
57
# Microbiology How is an endotoxin released?
When the cell lyses and dies
58
# Biology of cells key slides What are the sources of genetic diversity in bacteria?
Mutations Genetic transfer between cells
59
# Biology of cells key slides Types of genetic transfer among bacteria
Conjugation Transformation Transduction
60
# Biology of cells key slides Conjugation
Direct physical intereaction between cells Genetic material transfered from donor to recipient cells Usually in the form of a plasmid
61
# Biology of cells key slides Transformation
DNA released by a dead bacterium into the environment Take up by another bacteria
62
# Biology of cells key slides Transduction
Bacteial DNA transfered by bacteriophage virus
63
# Biology of cells key slides What makes up a virus?
**Nucleic acid** (DNA or RNA) Surrounded in protein coat (**Capsid**)
64
# Biology of cells key slides Nucleocapsid
Whole unit of nucleic acid and capsid in a virus
65
# Biology of cells key slides How can viruses be classified?
By their genome (DNA/RNA) By the host they infect By their structure
66
# Biology of cells key slides Basic steps of how viruses divide
1. Attach to host cell 2. Entry 3. Integration into host DNA 4. Synthesis of viral components 5. Viral assembly 6. Release
67
# Biology of cells key slides Are protists: * Prokayotes * Eukaryotes
Eukaryotes
68
# Biology of cells key slides What are the building blocks of DNA and RNA
Nucleotides
69
# Biology of cells key slides What is a genome?
Complete complement of an organisms genetic material
70
# Biology of cells key slides What are the components of a nucleotide?
Phosphate group Pentose sugar Nitrogenous base
71
# Biology of cells key slides Which nitorgenous bases are purines?
Adenine (A) Guanine (G)
72
# Biology of cells key slides What nitrogenous bases are pyrimadines?
Cytosine (C) Thymine (T) *Or* Uracil (U)
73
# Biology of cells key slides What is the pentose sugar in DNA?
Deoxyribose
74
# Biology of cells key slides What is the pentose sugar in RNA?
Ribose
75
# Biology of cells key slides What are the main structure differences between DNA and RNA?
DNA is a double helix, RNA is a single strand DNA has T instead of RNA's U DNA has deoxyribose instead of ribose
76
# Biology of cells key slides Who came up with the rule for base pairing?
Chargoff
77
# Biology of cells key slides Is it purines or pyrimidines that have a single ring?
Pyrimidines
78
# Biology of cells key slides What covalently links nucleotides?
DNA polymerase
79
# Biology of cells key slides Which process synthesises a specific polypeptide from mRNA?
Translation
80
# Biology of cells key slides What is a promoter in DNA?
Site for RNA polymerase to bind Signals the beginning of transcription
81
# Biology of cells key slides What is a regulatory sequence in DNA?
Site for the binding of regulatory proteins Influences the rate of transcription
82
# Biology of cells key slides What is the transcribed region in DNA?
Contains the information that specifies an amino acid sequence
83
# Biology of cells key slides What is the terminator in DNA?
Region of DNA that signals the end of transciption
84
# Biology of cells key slides What are the 3 stages of transcription?
85
# Biology of cells key slides What is removed from pre-mRNA after it has been transcribed to result in mature mRNA?
Introns
86
# Biology of cells key slides What is each end region of RNA called?
5' cap 3' tail
87
# Biology of cells key slides What happens to pre-mRNA to produce mature mRNA?
Capping Splicing Tailing
88
# Biology of cells key slides What does splicing do in transcription?
Removes introns
89
# Biology of cells key slides What are the 3 stages of translation?
90
# Biology of cells key slides Which direction does the polypeptide produced in translation run?
5' to 3' Parallel with mRNA
91
# Biology of cells key slides How does E.coli react to the availability of lactose in the environment? (Lac operon)
1. Registers lactose in environment 2. Bacterium produces more lactose permease and ß-galactosidase 3. Bacterium uses up lactose 4. Most proteins involved with lactose degraded
92
# Biology of cells key slides Why does E.coli degrade the proteins to do with lactose get degraded when lactose levels fall?
To make better use of cells energy supplies
93
# Biology of cells key slides Where does most bacterial gene regulation occur?
Transcription
94
# Biology of cells key slides At what points can eukaryotic gene regulation occur?
Transcription RNA processing Translation Post-translation
95
# Biology of cells key slides Role of repressors in transcriptional regulation
96
# Biology of cells key slides Role of activators in transcriptional regulation
97
# Biology of cells key slides What are the major differences in regulation of transcription between prokaryotes and eukaryotes?
Genes almost always organised individually in eukaryotes Regulation more intricate in eukaryotes
98
# Biology of cells key slides What is the advantages with alternative splicing?
2 or more different polypeptides can be derived from a single gene Increases the size of the proteome while minimising the size of the genome
99
# Biology of cells key slides Proteome
Entire set of proteins expressed by a genome
100
# Biology of cells key slides Nonsense mutation
Changes a normal codon to a stop codon Produces a truncated polypeptide
101
# Biology of cells key slides Frameshift mutation
Add or deletes nucleotides that are not a multiple of 3 Completely different amino acid sequence downstream (after) mutation
102
# Biology of cells key slides Silent mutation
Causes no change to polypeptide
103
# Biology of cells key slides Base substitution
One base swapped for another Can have varying effects
104
# Biology of cells key slides Missense mutation
Changes one amino acid to one that normally wouldnt be coded
105
# Biology of cells key slides Thymine dimers
Cuased by UV radiation Two adjacent thymines form a double bond with each other rathen than the adenine on parellel strand
106
# Biology of cells key slides Potentail effects of a thymine dimer
Cause a mutation when DNA strand is replicated as proper base pairing doesn't occur
107
# Biology of cells key slides Types of DNA repair
Direct repair Nucleotide excision repair
108
# Biology of cells key slides Direct DNA repair
Enzyme removes the modification
109
# Biology of cells key slides Nucleotide excision repair
Altered DNA strand replaced with sythesised one
110
# Biology of cells key slides Term for when cancer cells enter blood stream or surrounding body fluids
Metastasis
111
# Biology of cells key slides What are oncogenes?
Mutated genes producing cell growth factors More active than usual
112
# Biology of cells key slides How do oncogenes promote cancer?
Have high levels of activity of cell growth signalling protein production Keep cell division signalling pathway in permanent "on" position
113
# Biology of cells key slides What is the Ras protein?
Intracellular signaling protein Promotes cell division when GTP is bound
114
# Biology of cells key slides Intracellular
Inside the cell
115
# Biology of cells key slides Intercellular
Between cells
116
# Biology of cells key slides How can oncogenes effect the Ras protein?
Decrease ability of Ras to hydrolyse GTP or exchange GDP for GTP faster Either way keeps signalling pathway on
117
# Biology of cells key slides Checkpoint proteins
Proteins that check for mutations during cell cycle Stop the formation of complexes that make cells progress through the cell cycle if detects mutations
118
# Biology of cells key slides Which checkpoint protein is associated with about 50% of cancers?
p53
119
# Biology of cells key slides What proteins are responsible for advancing the cell through the cell life cycle?
Cyclins Cyclin-dependant protein kinases (cdks)
120
# Biology of cells key slides p53
G1 checkpoint protein Expression is induced when DNA is damaged Stops cell progressing through life cycle from G1 Cell can proceed if DNA is repaired
121
# Biology of cells key slides Steps of gene cloning
1. Isolate vector DNA 2. Insert gene of interest into vector 3. Introduce recombinant vector into host cell that doesn't already have any vectors 4. Host cell divides and produces many cells with recombinant vector
122
# Biology of cells key slides Genomics
Molecular analysis of the entire genome of a species
123
# Biology of cells key slides Phases of genomics
Structural Functional
124
# Biology of cells key slides Structural genomics
Where on the chromosomes are the genes?
125
# Biology of cells key slides Functional genomics
Studies expression of genes
126
# Biology of cells key slides What is insulin composed of?
Polypeptides A and B
127
# Biology of cells key slides What is a genetically modified organism?
An organism that carries genes introduced using molecular techniques such as gene cloning
128
# Biology of cells key slides Gene replacement
Cloned gene recombines with normal gene on a chromosome
129
# Biology of cells key slides Gene knockout
Clone gene inserted is a mutation that innactivates function Homozygote will not have gene function
130
# Biology of cells key slides Alternative splicing
mRNA produced that may not have all the exons that the pre-mRNA had Can produce different polypeptides from the same DNA
131
# Biology of cells key slides Types of cell signalling
Direct intercellular Contact dependant Autocrine Paracrine Endocrine
132
# Biology of cells key slides Direct intercellular cell communication
Occurs through gap junctions
133
# Biology of cells key slides Contact dependent cell communication
Membrane bound signalling molecule interacts with membrane bound receptor
134
# Biology of cells key slides Autocrine cell communication
Diffuses locally Affetcs cells that make it + others of that type
135
# Biology of cells key slides Paracrine cell communication
Diffuses locally Affects nearby cells Includes synaptic signalling via neurotransmitters
136
# Biology of cells key slides Endocrine cell communication
Uses hormones Travel the whole body via the blood
137
# Biology of cells key slides How do non-polar signals work in cell communication?
Can diffuse through the lipid bilayer Encounters its receptor in the cytoplasm
138
# Biology of cells key slides How do polar and/or large signals work in cell communication?
Can't diffuse across the cell plasma membrane Receptor is embeded in membrane Causes change to receptor part inside cell
139
# Biology of cells key slides Ligand gated ion channels in cell communication
Signal binds to ion channel protein Ion channel protein changes shape and opens Ions pass down concentration gradient Some are chemically gated as they respond to chemical signal
140
# Biology of cells key slides G-protein-coupled receptors
7 transmembrane spanning proteins Signals transmitted via elaborate relay cascade Target proteins for them are ion channel proteins and membrane bound enzymes
141
# Biology of cells key slides Differential gene regulation
The same signal can have different effects in different cells
142
# Biology of cells key slides Ways differential gene regulation can happen
Receptor may or may not be expressed May be more than one type of receptor Different affinity of receptors amongst cells Molecules in signalling cascades expressed differently Proteins controlled by signalling pathways may be different
143
# Biology of cells key slides Signalling cascade
One molecule binds with a receptor Activate multiple molecules These in turn activate many molecules each Continues and builds
144
# Biology of cells key slides Tight junctions
Seal tissues
145
# Biology of cells key slides Types of cells junctions
Tight junctions Anchoring junctions Gap junctions
146
# Biology of cells key slides Anchoring junctions
Anchors cells to each other and extracellular matrix
147
# Biology of cells key slides Gap junctions
Allows communication between cells
148
# Biology of cells key slides Extracellular matrix
Network of material secreted from cells Forms complex meshwork outside cells