Lecture 1: Nucleic Acids Flashcards

(44 cards)

1
Q

_____: Functional unit of genetic information

A

gene

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2
Q

______: Total complement of genetic elements for an organism

A

genome

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3
Q

_______: include DNA and RNA

A

nucleic acids

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4
Q

______: Large molecules that carry genetic
information like chromosomes and plasmids

A

genetic elements

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5
Q

what is the central dogma?

A

DNA, RNA and protein together comprise
the genetic information flow

replication, transcription, translation

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6
Q

genetic information flow:
1) ______: DNA is duplicated
2) _______: information from DNA
is copied into RNA
i. mRNA (messenger RNA):
encodes protein
ii. tRNA (transfer RNA): plays role
in protein synthesis
iii. rRNA (ribosomal RNA): plays
role in protein synthesis
3) _______: information in mRNA is
used to build proteins

A

Replication
Transcription
Translation

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7
Q

_______ = pentose sugar and nitrogenous base only (no phosphate group)

A

Nucleoside

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8
Q

nucleic acids are…

A

DNA = deoxyribonucleic acid
RNA = ribonucleic acid

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9
Q

monomers of nucleic acids are…

A

nucleotides

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10
Q

a nucleotide has three components, what are they?

A

pentose sugar (ribose in RNA and deoxyribose in DNA)
nitrogenous base
phosphate group

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11
Q

Difference between deoxyribose and
ribose is….

A

the presence of OH on 2’-
carbon in ribose pentose sugar

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12
Q

where do the phosphates connect in the backbone?

A

3′ carbon of one
sugar to 5′ carbon of the adjacent sugar

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13
Q

what are the nitrogenous bases in DNA

A

A, C, G, T

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14
Q

what are the nitrogenous bases in RNA

A

A, C, G, U

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15
Q

T/F: Primed numbering on pentose sugar differentiates from the
numbering on nitrogenous base

A

true

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16
Q

Can there be more than one phosphate group
attached to a nucleoside?

A

yes! nucleoside ____phosphate
mono, di, tri, etc.

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17
Q

_____: Devised three-
dimensional ball-and-
stick models to deduce
the structure of folded
protein → alpha helix
* Provided 1st clue

A

Linus Pauling
chemist and 1954 Nobel Prize winner

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18
Q

______ and ______:
Subjected crystallized DNA to X-ray beam
* Spacing of atoms within crystal
determines diffraction pattern
* Diffraction pattern mathematically
interpreted to provide structure
* Helical structure (10 bp/turn)
* Too wide for one helix
* Provided 2nd clue

A

rosalind franklin and maurice wilkins

19
Q

______:
Analyzed the base composition of DNA in the effort to find clues to
the structure of DNA

Extracted the chromosomal DNA
Added protease to remove protein
Acid-treated the DNA to hydrolyze the bases from DNA strands
Subjected isolated bases to paper chromatography
Extract bands and determine amount by light spectroscopy

A

erwin chargaff

20
Q

what is chargaff’s rule?

A

The amount of adenine (A) is equal to thymine (T)
* The amount of guanine (G) is equal to cytosine (C)
* Provided 3rd clue

21
Q

______:
Attempted to build models based on the
scientific clues of DNA
* Paralleled backbones of two helices on outside
with like bases aligned BUT didn’t fit model
* Revised model by aligning bases A’s to T’s and
G’s to C’s as per Chargaff’s rule

A

james watson and francis crick

22
Q

what is the conservative model of DNA?

A

Complementary strands are synthesized
from parental “old” templates
* The two newly created “daughter” strands
than come together
* The parental strands re-associate

fully conserve OG DNA

23
Q

what is the dispersive model?

A

Parental strands are dispersed into two new
double helices following replication
* Each strand consists of both old and new
DNA
* Would involve cleavage of the parental
strands during replication

mixed together on each strand

24
Q

what is the semi-conservative model?

A

Each parental “old” strand serves as a
template for synthesis of “new” daughter
DNA strand
* New DNA contains one parental strand
and one daughter strand

the right one!

25
how did we prove that DNA has a semi-conservative model?
the meselson and stahl experiment! studied the distribution of isotopic nitrogens and examined the density
26
double strands of DNA are _____ and ______ to eachother
complimentary and anti-parallel
27
why are C-G bonds harder to break?
3 H bonds, harder to break than the two of A-T
28
DNA double helix: A single turn of the helix has vertical length of _____ * 10 bp per turn * Each bp rotates 36° relative to the previous bp
3.4 nm
29
Sugar-phosphates are outside forming double helix - results in a ______ and _______ * Important for DNA/protein interactions
major and minor groove
30
_______ = a genetic element carrying genes essential to cellular function
Chromosome
31
what are some other genetic elements?
virus genomes, plasmidsm organellar genomes, transposable elements
32
Supercoils are inserted or removed in DNA by enzymes called _______
topoisomerases
33
T/F: Activity of supercoiling puts the DNA molecule under torsion, and the DNA can be supercoiled in either a positive or a negative manner
true!
34
______ supercoiling results when the DNA is twisted about its axis in the opposite sense from the right-handed double helix → Is the form found in most cells
Negative
35
______ supercoiling results when the DNA is twisted in the same spiral direction
Positive
36
Special enzymes called _________ mediate supercoiling of DNA e.g. DNA gyrase inserts negative supercoils into DNA
topoisomerases
37
Supercoiled domains anchored by DNA-binding proteins, do these provide some organization?
yes, they provide a slight sense of structure similar to histones... but not as developed
38
Thousands of genomes from species of Bacteria and Archaea have been completely sequenced generating _________ * Allowed the development of bioinformatics as a research field
genetic maps
39
E Coli _________: 1% of genome encodes tRNAs, rRNAs and other non-coding RNAs * 88% of genome are protein-encoding genes * enzyme-encoding genes that function in the same biochemical pathway are clustered together (i.e. operons) * e.g. gal (galactose), trp (tryptophan), his (histidine)
genetic map
40
______ = the specific set of genes an organism possesses
Genotype
41
_______ = the set of all observable characteristics * dependent on genotype * influenced by environment
Phenotype
42
T/F: Many Bacteria and Archaea contain plasmids in addition to their chromosome(s)
true!!
43
________: are non-essential with rare exception. They typically do not contain genes required for growth under all conditions Encode genes beneficial to host cell * Virulence, antibiotic resistance, bacteriocins * Nitrogen fixation, bioremediation properties Most are circular, but many are linear vary in size 1kbp to over 1 mbp
plasmids
44
plasmid R100 is a...
specific type of reisstance plasmid