Lecture 13 - Nucleic acid structure Flashcards

(48 cards)

1
Q

Information encoded in a DNA molecule is transcribed via

A

synthesis of an RNA molecule

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

The sequence of the RNA molecule is “read” and is translated into

A

the sequence of amino acids in a protein

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Nucleic acids are

A

linear polymers built from similar units connected end to end

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Nucleotide

A

each monomer unit

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

A single nucleotide consists of

A

a sugar, a phosphate, and one of four bases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

DNA and RNA differ in

A

the sugar component and in one of the bases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

The prefix deoxy indicates that the _____ carbon lacks oxygen

A

2’

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

The sugars in nucleic acids are linked to each other by

A

phosphodiester bridges

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Nucleic acid backbone

A

The chain of sugars linked by phosphodiester bridges

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Which groups join to phosphate groups

A

3’ and 5’ OH groups

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Purine bases

A

adenine and guanine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Pyrimidine bases

A

cytosine, thymine, and uracil

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Which nucleic acid is more prone to hydrolysis?

A

RNA

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

A nucleoside is a

A

base linked to a sugar

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

A nucleotide is a

A

base linked to a sugar and phosphate

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Nucleoside units in RNA

A

adenosine, guanosine, cytidine, uridine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

Nucleosides in DNA

A

deoxyadenosine, deoxyguanosine, deoxycytidine, and thymidine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

Rotation about the ________ gives rise to syn and anti conformations in nucleosides

A

N-glycosidic bond

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

In nucleosides, the _____ conformation is generally favored

A

anti

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

Nucleoside triphosphates are

A

nucleosides joined to three phosphoryl groups

21
Q

Where does the energy come from in ATP?

A

Energy is released from the cleavage of the triphosphate group

22
Q

NADH stands for

A

Nicotinamide adenine dinucleotide

23
Q

NADH exists in what two forms

A

NAD+ (oxidized), and NADH (reduced)

24
Q

ACG indicates that

A

the unlinked 5’-P group is on A and the unlinked 3’-OH group is on G

25
In DNA, the 5' end is usually attached to a
phosphate group
26
In DNA, the 3' end is usually attached to a
free hydroxyl group
27
How is DNA or RNA written?
from 5' to 3'
28
Nucleic acids carry information in the form of
a sequence of bases
29
The two strands of DNA base pair through
hydrogen bonds
30
Are chains in DNA parallel or antiparallel?
antiparallel
31
Which regions of DNA are more stable?
G:C rich regions (3 H-bonds compared to 2 in A:T)
32
The DNA double-helix is stabilized by
* Hydrogen bonds * Base stacking interactions (vdW) * Hydrophobic interactions
33
Which interaction most stabilizes DNA?
base-stacking
34
In a double helix, the pyrimidine and purine base lie on the
inside of the helix
35
The major groove in the double helix is large enough to accommodate
an alpha helix from a protein
36
Which alpha-helix motif interacts with DNA?
Zinc finger
37
Regulatory proteins (transcription factors) can recognize
the pattern of bases and H-bonding possibilities in the major groove
38
The Watson-Crick model of DNA is also known as the ______ helix
B-DNA
39
Most DNA is in the ___ form
B-DNA
40
B-DNA is more _____ than A-DNA
hydrated
41
The A-form of DNA is what shape compared to the B-form?
wider and shorter
42
The structural differences between B-DNA and A-DNA come from
different sugar puckerings
43
Dehydration of DNA drives it to the
A-form
44
What is unique about Z-DNA
It is left-handed
45
Z-DNA is a derivative of
B-DNA
46
Where is Z-DNA found?
In G:C rich regions
47
DNA molecules in human chromosomes are ______ while in bacteria and archaea they are ______
linear: circular
48
The most common nucleic acid secondary motif is a
hairpin-loop