Lecture 2 Flashcards

1
Q

MUC =

A

Mucins in humans

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2
Q

Muc =

A

Mucins in mice

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3
Q

What is the major mucin in the small intestine?

A

MUC2

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4
Q

What happens to aspirin when it goes into the stomach?

A

When combined with the acid it becomes uncharged and so it can cross the cell membrane

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5
Q

What happens do ethanol when it is in the stomach?

A

It has its own charge and so it can be absorbed across the stomach

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6
Q

What type of organ is the stomach?

A

It is a non-absorptive organ

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7
Q

What types of mucin are absorbed in the stomach?

A

MUC5AC and 6

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8
Q

What is the MW of a mucin polymer?

A

2million MW and when it forms complexes the MW is 10 million

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9
Q

What is the structure of a mucin polymer?

A

Has a variable tangent repeat, a density glycosylated region, Globular domains and disulphide bridges linking subunits into polymers

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10
Q

What are VNTR also called?

A

An STP region as they contain serine, theronine and proline

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11
Q

What can attach to the STP region?

A

Carbohydrates can attach

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12
Q

What are the regions between the VNTR?

A

They are exposed to proteolytic enxymes

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13
Q

How do the mucin polymers polymerise?

A

By disulphide brides - can polymerise at the C and N terminal

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14
Q

What needs to happen in order for mucin to form a gel?

A

Mucin needs to be polymerised

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15
Q

What can the gaps in between the VNTR be degraded by?

A

Can be degraded by pepsin

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16
Q

What ends up in the colon?

A

A soluble mucin glycoprotein that can’t be further digested by proteinase, so it wont be able to form a gel.

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17
Q

What type of balance is needed in the stomach?

A

A dynamic balance - between secretion and the pepsin that is degrading the mucus from the surface - a dynamic balance is needed to maintain the thickness of the mucus

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18
Q

What is pepsin?

A

It is a damaging agent and is found in the stomach in gastric juice

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19
Q

What pepsin subgroups are found in gastric juice in humans?

A

A and C

20
Q

Can pepsin diffuse through mucus?

A

No because it is too large

21
Q

How does pepsin get to the cell surface?

A

Mucus would need to be digested

22
Q

What pepsin is the most negatively charged?

A

Pepsin 1

23
Q

What type of pepsin is the least negatively charged?

A

Pepsin 6

24
Q

What are two ways to separate pepsins?

A

Gel electrophoresis and HPLC

25
Q

What are the main pepsins in gastric juice?

A

5,3,1- and they are separated by anion exchange

26
Q

What happens to pepsin during reflux?

A

Some of the gastric juice will end up on your larynx, this will be neutralised but the pepsin will be stuck to the larynx. Th next reflux there is a drop in pH, as the pepsin that got stuck is already sitting there

27
Q

When is pepsin activated?

A

When there is a change in pH

28
Q

What covers the active site of pepsin?

A

A lid which is formed by the n terminal

29
Q

What are the two points of cleavage on the pepsin molecule?

A

16 and 17 and 44 and 45

30
Q

Where does pepsin cleave?

A

Between 2 hydrophobic amino acids

31
Q

What is the difference between pepsin and pepsinogen?

A

Pepsin has a bit missing, and end chopped off

32
Q

What happens to the lid at a pH of 5?

A

To is held away from the active site, and it is held up by salt bridges or charge-charge interactions

33
Q

What happens above pH5?

A

Histamine, lysine and arginine and +ve charged and aspartate and glutamate are -ve charged

34
Q

What happens when the pH decreases below pH5?

A

Aspartate and glutamate will get protonated - they wont be charged anymore, they have lost the negative charge

35
Q

What happens when the bridge is lost? Below pH5

A

The lid will drop into the active site, the active site becomes activated and cleaves the end terminal between 1-16 amino acids

36
Q

What can propepsin interact with?

A

Other propepsin molecules or full active pepsin molecules

37
Q

What is the pepsin structure?

A

N terminal is slightly different to the c terminal, a central valley is where the active site is held

38
Q

What is pepsinogen structure?

A

The N and C terminals are almost identical

39
Q

What does the active site in the pepsin structure rely on?

A

Relies on two aspartate residues (32 and 215)

40
Q

What is the active site residue reliant on?

A

Relies on one aspartate being ionised and the other being protonated

41
Q

Can you reform pepsinogen from Pepsin?

A

No - because pepsin has the N terminal chopped off

42
Q

When does pepsin denature?

A

At pH8

43
Q

What is the structure/ stability of pepsin at pH 8?

A

Long and denatured, the molecule has been unfolded

44
Q

What happens if pepsin was to be refolded after it had been denatured?

A

It won’t fold properly because the n terminal is not in the right shape, instead of a valley for the active site there is a an open plane - you can reactivate pepsin once it has been denatured

45
Q

How long is pepsin in humans?

A

47 amino acids long

46
Q

Why is pepsin a good antimicrobial?

A

Because it will digest the bacteria. The bits cleaved off the pepsin will also have good antimicrobial activity