Lecture 5 Flashcards

1
Q

what type of receptors do cytokines signal thru?

A

signal via HETERODIMERIC receptors

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2
Q

describe the activation of cytokine receptors (4 steps)

A
  1. cytokine binding allows for dimerization
  2. each subunit has kinase domain that phosphorylates opposite subunit
  3. more phosphorylation allows for more STAT phosphorylation
  4. STATs dimerize and go to nucleus to drive transcription
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3
Q

how is cytokine receptor signaling different than PRR signaling?

A

PRRs usually monomers, cytokine receptors are heterodimers

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4
Q

what is the common gamma chain?

A

common subunit for many cytokine receptors

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5
Q

describe the 2 subunits of cytokine receptors

A

1 is common gamma chain, 1 is subunit specific to cytokine

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6
Q

2 ways that specificity is achieved with cytokine signaling

A
  1. unique subunit
  2. heterodimerization of diff STATs
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7
Q

describe how heterodimerization of STATs allows for specificity with cytokine signaling

A

many cytokines can signal through the same STAT protein but diff combinations of STAT dimers allows specific downstream signaling

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8
Q

explain IL-2 signaling vs IL-7 signaling

A

both signal via receptor via common gamma chain + IL-2 or IL-7 specific subunit

both signal thru same JAK kinases

both use STAT5 but heterodimerize with diff STATs

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9
Q

why is it important that cytokine signaling has specificity? use IL2 vs IL7 as example

A

for example, IL2 and IL7 are important for lymphocyte growth but at different times so receptors are expressed at different times

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10
Q

to identify the unknown lineage negative cells from last lecture, why is it helpful to see if they respond to common gamma chain cytokines?

A

lymphocytes respond to cytokines bc their cytokine receptors have the common gamma chain –> so interesting to see if these unknown cells can also respond like T cells

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11
Q

what happens if you put T cells in a dish with IL-2?

A

IL-2 is lymphocyte development cytokine –> will proliferate and differentiate

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12
Q

what happens if you put the unknown cells in a dish with IL-2?

A

cells are responding to the cytokine –> PROLIFERATING but not differentiating into lineage and maintaining stem cell-like markers

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13
Q

explain these results, one column at a time

A

IL-2
- growing but not making cytokines

IL-2 + IL-25
- making IL5 and IL13, not IFNy

IL-33
- making IL5 and IL13, not IFNy

Th1 and Th2 are positive controls

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14
Q

what is the significance of these unknown cells being able to produce IL5 and IL13? how do we know?

A

must be INNATE-LIKE LYMPHOID cells bc they are making Type 2 cytokines, IL5 and IL13

but they are NOT T cells bc T cells require APC and antigen to activate, but these cells could activate with only cytokines (a property of innate cells)

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15
Q

what do these data show? conclusion?

A

(Rag KO = cant make TCR/BCR)

Stimulating cells with IL33:
- In Rag KO: lots of IL5 and IL13
- In Rag and gamma chain KO: no IL5 or IL13 produced

therefore, when stimulated must respond via gamma chain to produce IL5 and IL13

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16
Q

what do these images show? significance?

A

injecting with IL33 allows for production of goblet cells in rag KO but not rag and gamma chain KO mice

significant bc goblet cells can only be made when IL13 is produced

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17
Q

what is the INDIRECT evidence that these unknown cells are the cells that produce IL13? why is this only indirect evidence?

A

stimulating Rag KO mice with IL33 allows production of IL13 and goblet cells (stimulated by IL13)

this is INDIRECT bc maybe other cells that make IL13 are also being knocked out, we’re not directly looking at the cells of interest

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18
Q

what do these data show?

A

instead of injecting IL33, infect mouse with Nippo worm

WT and Rag KO similarly produce IL5 and IL13 (therefore Rag not necessary for function, therefore not lymphocyte)

Gamma chain and Rag KO has no IL5 or IL13 production

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19
Q

how can we show direct evidence of ILC2 function?

A

instead of using IL33 alarmin cytokine to stimulate cells, actually infect the mouse with Nippo worm bc more physiologically relevant

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20
Q

what did they do after showing that Nippo worm infection stimulates cytokine production in WT and Rag KO mice but not in gamma chain and Rag KO mice? what did they find?

A

transfer the ILC2s to infected gamma chain and Rag KO mice

infected mice who received the ILC2s produced IL13 and more goblet cells

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21
Q

what is the direct evidence of these unknown cells producing IL13?

A

when there is a worm infection, the unknown cells are sufficient to drive the response and make IL13 and therefore goblet cells

22
Q

describe the ILC lineage (4 stages)

A
  1. common lymphoid progenitor
  2. diff signals allow for diff cells to be produced but all require GATA3
  3. Become ILC precursor in bone marrow
  4. diff cytokine signals promote differentiation
23
Q

describe the common lymphoid progenitor

A

lives in bone marrow and gives rise to all lymphoid cells and ILCs

24
Q

are ILCs tissue-resident?

A

yes, they are tissue-resident cells of lymphoid origin

25
since ILCs are tissue resident what does this mean about the signals they receive?
they are responsive to epithelial-derived cytokines and alarmins
26
describe the level of ILC activity vs lymphocyte activity
ILCs are more potent than T cells so they have a large effect very quickly at the barrier site
27
how are ILCs grouped?
based on function --> i.e. the type of response and pathogen grouped similarly to Th1, Th2, and Th17
28
what adaptive cell does ILC2 correspond to?
corresponds to Th2 cell
29
what is similar about the ILC2 and Th2 counterparts?
both come from same progenitor and make similar cytokines
30
what cytokines do Th2 cells make? what cytokines do ILC2 cells make?
Th2 cells make IL4, IL5, and IL13 ILC2 cells make IL5 and IL13
31
what transcription factor regulates expression of Th2 and ILC2 cytokines?
GATA3
32
If GATA3 is required for ILC2 and Th2 development, why does ILC2 not make IL4?
IL4, IL5, and IL13 genes are all next to each other so making one usually means you will make the other but the way that GATA3 is stimulated in each cell type is different, allowing IL4 gene to be silenced for ILC2s
33
explain the differing pathways to activate Th2 and ILC2
T cells are stimulated by TCRs with NFk and IL4R activation allowing for GATA3 to activate IL4, IL5, and IL13 production but ILC doesn't receive TCR signal so drives different pathway for GATA3 to activate IL5 and IL13 production
34
what could be another reason that IL4 is not expressed in ILCs?
IL4 may selectively silenced in ILCs thru epigenetics
35
what are pioneer TFs? how are they different from other TFs?
pioneer TFs access DNA regardless of their state other TFs require DNA to have certain accessibility
36
how does pioneer TF function affect function of other TFs?
pioneer TFs can alter DNA accessibility so other TFs can access the DNA
37
Describe how memory T cells are produced
1. T cell activated by antigen, costimulatory molecules, and polarizing cytokines 2. after responding to infection, some cells remain at site of infection 3. cells can just see antigen without costimulatory molecules or polarizing cytokines which is sufficient to activate the memory cell
38
what allows for the memory of memory T cells?
epigenetic imprinting!
39
what is the actual "memory" of memory T cells?
at the site of infection they can respond to antigen ONLY without the need for costimulatory molecules or polarizing cytokines
40
describe the experiment looking at innate immune memory: what were the 2 stimulating experiments?
stimulated macrophages with: - LPS --> makes lots of pro-inflammatory cytokines - B-glucan --> makes lots of pro-inflammatory cytokines - no stimulus --> no cytokines then wash and stimulate with TLR2 agonist: - cells previously stimulated with LPS --> makes very little pro-inflammatory cytokines - cells previously stimulated with B-glucan --> makes lots of pro-inflammatory cytokines - cells without previous stimulus --> make some pro-inflammatory cytokines
41
what can be concluded from the fact that cells previously stimulated with LPS produced no cytokines from TLR2 agonist?
cells gained LPS tolerance
42
when is it important for cells to gain tolerance to antigens?
important in the gut where there's lots of bacteria bc we don't want to respond under normal conditions - immune cells extend dendrites thru epithelium to sample gut lumen and gain tolerance
43
what can be concluded from the fact that cells previously stimulated with B-glucan produced lots of cytokines from TLR2 agonist?
the cells had TRAINED immunity
44
what is trained immunity?
cells can have innate immune memory and maintain a response even if TLR2 is being stimulated with diff stimulus
45
what makes innate memory different than adaptive memory?
innate memory is NOT specific --> don't need to see the same thing twice to get memory
46
what is the issue with innate memory not being specific?
could lead to inappropriate response
47
how do the findings of Kariko and Weissman "fine-tune" Janeway's self vs non-self concept of host defense?
modifications of RNA are what allow the host to distinguish btwn microbial and host RNA
48
if unmodified RNA is a PAMP, why do we modify it to hide it from the immune system?
allows us to make RNA vaccines --> don't want the RNA to be immediately destroyed or trigger an immune response
49
starting from intestinal epithelial cells and ending at worm expulsion, how do ILCs contribute to parasitic worm expulsion?
when there's a worm, epithelial cells activate stress response and make alarmins, IL25 and IL33, which activate ILCs to make cytokines that act on the epithelium
50
3 reasons why ILCs are well-suited to be an innate counterpart to CD4+ Th cells?
1. involve same TFs and cytokines 2. both are tissue-resident 3. don't require antigen-presentation so they are innate
51
2 factors that explain why CD4+ T cell and ILC cytokine production differs?
1. epigenetic differences 2. convergence of multi-signaling pathways --> ex. T cells have TCR signaling that doesn't happen in ILCs