lecture 5 Flashcards

(36 cards)

1
Q

what is a virus?

A

filterable agent that causes diseases –> semi permeable filter traps larger items like bacteria and allows smaller ones to pass thru

they are small enough to pass through a 0.2 micron filter

OR a set of genes in a protein coat

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

where is it replicated?

A

only in host, not in pure culture

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

what does it mean that some viruses are disease cofactors?
example?

A

some viruses that do not cause a disease themselves can increase the probability of a person getting that disease when present with a causing agent

KSHV–>causes Kaposi sarcoma, but does not develop KS unless the patient is infected wit HIV1 (cofactor)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

do all viruses cause disease? what is an example?

A

no, some show symptoms (inapparent or subclinical) and some do not (asymptomatic)

SARS COVID2

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

are viruses alive?

A

are inert until they are in living cells
co op host cell machinery for their own replication

are obligate intercellular parasites

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

what is a virion and how does virion differ from virus?
what are two phases of a virus?

A

virion– viral particle is a physical set of genes in a protein coat – inert extraceullar form

virus can refer to type of virus or type of infection, or virion

virioin and infected cell–completely depended on the host

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

what are morphological features that make viruses different from cells?

A

small genome and either RNA OR DNA

are all smaller than the host they infect

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

what are virus replication properties?

A

do not grow or divide outside cells
don’t work outside cells (not alive)
lack energy generation systems
can’t make own proteins
replication depends on living cells

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

what is the virus replication process?

A

attach to cells randomly–> more likely to attach if virus and receptors are abundant & interaction is strong

enter cells–> likely to happen if internalization occurs upon virus/recpetor binding

use host machinery to replicate–> can fail if the cell lacks wha the virus needs

assemble and release

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

viruses are macromolecular assemblies that……

A

disassemble during replication

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

what are common capsid forms?

A

icosahral —polyhedron with 20 triangular faces

helical –capsomeres on viral nucleic acids, all helical animal viruses are enveloped

complex

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

what are types of viruses, that is their external surface of virons?

A

naked or enveloped –> both have virus proteins on external surface

enveloped

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

what is a capsid

A

protein coat surrounding viral genome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

what is the difference between envelope and naked virus?

A

naked– lakes outer lipid bilayer, outside of virion is virus encoded protein capsid

envelope–lipid bilayer coating, acquired during budding thru a cellular membrane

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

what is a spike?

A

virion surface protein in viral genome

virion attachment proteins

can be called an envelope protein for some viruses

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

what is an asymptomatic infection?

A

disease virus undergoes replication, but disease symptoms do not occur so the individual may not know they are infected

17
Q

what is a segmented genome?

A

genome that has more than 1 piece of nucleic acid

18
Q

what is a viral antigen?

A

part of a virion whose structure is recognized by a host antibody

19
Q

what is zoonosis?

A

infection of animals that spreads to humans directly or by an arthropod

20
Q

why are enveloped virus less stable than naked?

A

lipid envelopes are fragile outside of bodily fluids

if envelope is removed, this will cause the enveloped virus to loose its proteins to attach to cells. because they are anchored to it

21
Q

what are the 7 classes of viral genomes?

A

dsDNA
sDNA
dsRNA
ss + sense RNA
ss - sense RNA
gapped DNA
reverse transcribed RNA (ss + RNA with DNA intermediate AND gapped DNA)

22
Q

what does plus and minus sense mean?

A

plus: sRNA that can be translated directly

minus: reverse complement of mRNA, complementary RNA serves as mRNA

23
Q

what do large and small viral genome include?

A

large: genes redundant wit the hosts
alter host metabolism
genes for immune evasion

small: rely heavily on host

24
Q

examples of dsDNA viruses?

A

herpes and epstein, small pox— evelope & large

HPV–nake and small

25
examples of RNA - and RNA +?
-: filo, rabies, orthomyxo (flue) +: corona, polio (naked), flavi
26
what are reverse transcribing virus?
hep is dsDNA retro (HIV) is RNA+
27
example of taxonimcally different kinds of virus that cause the same disease?
hepatitis-- .liver disease HIV can be caused by intravenous, sexual, or congenital virus groups or zika via zoonosis or congenital
28
methods of quantification: physical / molecular methods?
** do not require replication** counting particles-microscopy hemagglutination PCR QUANTIFY proteins Electron microscopy -molecular ELISA-molecular Lateral flow test -molecular
28
methods of quantification: biological methods?
plaque assay-- measure around of disease by counting plaque that form in a sample animal infectivity (LD50) lethal does at which half animals die ** requires virus replication***
29
why may titer values differ by different methods?
some may have a high defective/ infectious particle ration for some virus, only a single cell will become infected in the presence of more than a thousand virons
30
how does hemagglutination assay work? how antibodies can inhibit hemagglutination?
serial dilute stock concentration added to RBC, incubated then observed agglutinated RBC are coated in virus, causes networks that cause the cells from settling at bottom of well non agglutinated RBC will settle at bottom of well for antibodies that target the same portion of viral spikes that are required for attachment to cells, virons ability to attach to cells is disrupted
31
what is lateral flow test?
a sample mixed in a buffer includes a control antigen and a substance that allows for antibody/antigen complexes test strip has 2 bands where antibodies have been immoblized (control and T band) if test strip is correctly, the C band will be visible if the antigen of interest is in the sample, T band will be visible
32
what is PCR? what do we need for it?
knowledge of virus nucleic acids because if it is RNA, must reverse transcribe
33
what is cT value pertaining to qPCR? what is the DNA amplification product labeled as?
cycle threshold--> how many PCR must be completed before a pos signal can be detected more PCR--> higher conc of viral genome, lower CT values less PCR--> high CT values--> more cycles needed for amplification product ***flourescelty labeled with intercalating agent, can be detected above background levels**
34
What can interfere with hemagglutination?
Virus + RBC—hemagluttination Virus+antibody+RBC—inhibition of hennagluttinaton (serum with viral antibodies)
35
How are virus considered multitalented agetnts ?
Can quantify w pathogen, antigen, antibody