Lecture 6 Flashcards

(90 cards)

1
Q

Which of the following uses sunlight for energy and CO2 for a carbon source ?

A

Photoautotrophs

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2
Q

What species differentiates into fruiting bodies ?

A

Myxococcus xanthas

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3
Q

INTRODUCTION

Microbes have both the fastest and slowest growth rates of known organisms

A
  • Some hot springs bacteria double in as little as 10 min

* Some deep-sea sediment microbes take as long as 100 years

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4
Q

What determines the differences in growth rate?

A
  1. Nutrition
  2. Temperature
  3. pH
  4. Osmolarity
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5
Q

ENVIRONMENTAL LIMITS ON GROWTH

What are “normal” growth conditions?

A

From our human frame of reference “normal” is defined as: sea level, 20-40C, near neutral pH, salt concentration 0.9%, and ample nutrients

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6
Q

Any ecological niche outside this window is labeled “extreme” and organisms inhabiting them are called ____

A

Extremophiles. (Like temp. & pressure)
• Extremophiles may evolve to survive multiple extreme environments
• Extremophiles may provide insight into the workings of extraterrestrial microbes we may one day encounter (astrobiology)

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7
Q

MICROBES ARE COMMONLY CLASSIFIED BY THIER ENVIRONMENTAL NICHE

A

[pic with important info]

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8
Q

GROWTH AND TEMPERATURE

 Every organism has an optimum temperature at which it grows most quickly
A

Also, minimum and maximum temperatures that define the limits of growth

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9
Q

Fastest growth rate occurs at temp where all proteins work most efficiently as a ______

A

Group

*as it starts
Optimum —-> normal

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10
Q

Rising temperatures cause critical enzymes or cell structures (e.g. cell membrane) to ____

A

Fail

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11
Q

At _______ temperatures enzymatic processes become too sluggish and the cell membrane becomes too rigid

A

Cold

*move a lot slower

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12
Q

The relationship between growth rate constant and temperature obeys ______ equation

A

Arrhenius

k= Ae ^ Ea/RT

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13
Q

General result – growth rate roughly ____ every 10C rise in temperature

A

Doubles

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14
Q

______ breaks down at upper and lower limits of growth

A

Arrhenius

[pic]

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15
Q

The typical temperature growth range spans the organisms optimal growth temperature by ____

A

30 - 40 C

* Some organisms have a smaller range

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16
Q

_______ principles limit a cell’s growth to a

narrow temperature range

A

Thermodynamic
• Heat increases molecular movement with proteins
• Too much or too little movement will interfere with enzymatic reactions

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17
Q

MICROBES ARE CLASSIFIED BY GROWTH TEMPERATURE

   Mesophiles :
A

~15-45 C, typical lab strains

[pic]

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18
Q

PSYCHROPHILES (0-20 C)
(Grow in extreme cold temps)

Optimum growth

A

~15 C

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19
Q

Proteins are more ____

A

Flexible

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20
Q

Require less ____ (heat) to function

A

Energy

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21
Q

Membranes are more ____

A

Fluid

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22
Q

Have antifreeze proteins and other ____ That depress the freezing point

A

Cryoprotectants

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23
Q

THERMOPHILES (40-80 C)

Hyperthermophiles

A

65-121 C

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24
Q

Enzymes are more stable – don’t unfold as easily

A

Low amounts of glycine

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25
Chaperone
proteins that help refold other proteins | undergoing denaturation
26
DNA binding proteins that ____ DNA
Stabilize
27
Membranes are more ____
Rigid. (So they can withstand the higher temps) [pic]
28
GROWTH AND PRESSURE Barophiles or piezophiles –
organisms adapted to grow at high pressures • Up to 1,000 atm (110 MPa, 15,000 psi) • Sea level – 1 atm
29
Barotolerant
grow well over 1-50 MPa but their growth falls off thereafter [PIC]
30
Many_______ are also psychrophiles or hyperthermophiles
Barophiles
31
How bacteria survive extreme pressures is still a mystery
• Increased hydrostatic pressure and cold temperatures reduce membrane fluidity • Specially designed membranes and protein structures are needed [pic]
32
OSMOLARITY Water activity (aw)
is a measure of how much water is available for use
33
Osmolarity
is a measure of the number of solute molecules in a solution and is inversely related to aw • The more particles in a solution the greater the osmolarity and the lower the water activity • Hypertonic – external osmolarity is higher • Hypotonic – internal osmolarity is higher • Water will move across the semi permeable membrane in an attempt to equalize osmolarity across the membrane
34
OSMOLARITY
[PIC]
35
Aquaporins
are membrane-channel proteins that allow water to traverse the membrane much faster than by diffusion • Help protect the cell from osmotic stress [PIC]
36
PROTECTION AGAINST OSMOTIC STRESS When in a ________, bacteria try to protect their internal water from leaving by synthesizing or importing more solutes (proline, glutamic acid, potassium, betaine)
Hypertonic solution
37
Cells contain _________ (mechanosensitive) channels that can be used to leak solutes out of the cell
Pressure sensitive | • Activated by rising internal pressures
38
HALOPHILES Require high _____ concentrations to grow
Salt (NaCl) • 2-4 M (20-30%) • Compared to sea water ~3.5% NaCl
39
Use special ion pumps to excrete ____ and replace it with other cations
Sodium | [pic]
40
PH The concentration of ______________ has a direct effect on the cell’s macromolecular structures
Hydrogen ions (H+) • Actually hydronium ions (H3O+) • Extreme concentrations of hydronium or hydroxide (OH-) ions in a solution will limit growth
41
Cells can tolerate a _____ range in H+ than any other substance
Greater | [pic]
42
PH OPTIMA, MINIMA, AND MAXIMA Charges of _____ or ______ groups within a protein play a key role in protein folding and activity
Amino. Carbonyl
43
[H+] concentration affects the ______ of these groups
Protonation
44
Thus, _______ activity exhibits optima, minima, and maxima with respect to pH
Enzyme
45
Biological membranes are relatively _______ to protons
Impermeable *When difference in pH is very high, protons can leak through
46
Weak acids can pass through membranes
Dissociate intracellularly – acidifies internal pH (limits growth)
47
CLASSIFICATION OF ORGANISMS ACCORDING TO OPTIMUM GROWTH PH Neutralophiles
pH 5-8 | • Include most pathogens
48
Acidophiles
pH 0-5 • Often chemoautotrophs • Altered membrane lipids – high levels of tetraether lipids – decrease proton permeability
49
Alkaliphiles
``` pH 9-11 • Typically found in soda lakes • Use sodium motive force and Na+/H+ antiporters [PIC] ```
50
OXYGEN Many microbes can grow in the presence of ____
O2 • Some use oxygen as terminal electron acceptor (TEA) in the electron transport chain • This process is called aerobic respiration
51
Oxygen and its breakdown products are _______ reactive (reactive oxygen species)
``` Dangerously • Can damage DNA, RNA, protein • Aerobes have enzymes that destroy ROS (Reactive oxygen species) • Species have evolved to tolerate or avoid oxygen altogether ```
52
GROWTH AND OXYGEN Strict aerobes
only grow in oxygen
53
Microaerophiles
grow only at lower oxygen levels
54
Strict anaerobes
die in the least bit of oxygen
55
Facultative anaerobes
can live with or without oxygen
56
Aerotolerant anaerobes | Have enzymes that kill ROS
grow in oxygen while retaining anaerobic metabolism
57
{PIC}
..
58
NUTRIENT DEPRIVATION AND STARVATION Lack of _____ slows metabolism
Nutrients
59
Growth rates ___
Slow
60
Daughter cells become _____
Smaller
61
Stimulates ____ responses
Stress
62
Cells begin to make and store _____
Glycogen
63
Programmed cell death
members of population sacrifice themselves to save others – dying cells release nutrients for other cells
64
ANTIMICROBIAL CONTROL MEASURES Sterilization
killing of all living organisms
65
Disinfection
killing or removal of pathogens from | inanimate objects
66
Antisepsis
killing or removal of pathogens from the surface of living tissues
67
Sanitation
reducing the microbial population to safe levels
68
CELLS TREATED WITH ANTIMICROBIAL DIES AT A LOGARITHMIC RATE
• D-value (decimal reduction time) – length of time it takes the agent to kill 90% of the population • 2 D-values = time to kill 99% of cells [PIC]
69
PHYSICAL AGENTS THAT KILL MICROBES
* Temperature * Temperature + Pressure • Irradiation * Filtration * Chemical agents * Biological agents
70
TEMPERATURE : PASTEURIZATION Combination of temperature and time
* LTLT (low temperature/long time): 63C for 30 min | * HTST (high temperature/short time): 72C for 15 seconds
71
Doesn’t kill all microbes –
will eventually spoil
72
UHT (ultra high temperature): 150C for 3 seconds, | immediate cooling
• Sterilizes. Milk can be stored up to 9 months
73
TEMPERATURE + PRESSURE : AUTOCLAVE Boiling water (100C) kills most cells, but killing ______and _______ usually requires a combo of high temperature and pressure
Spores. Thermophiles
74
Autoclave
``` • 121C, 15 psi (2atm) for 20 min • Kills all bacteria • Kills endospores *Clostridum botulinum * Bacillusanthracis ```
75
OTHER METHODS Cold temperature –
refrigeration • Slows growth, does not kill all bacteria
76
Freezing
.
77
Irradiation
* UV, X-rays, g-rays | * Doesn’t work well on viruses
78
Filtration
• Defined pore sizes that remove microorganisms • Doesn’t work on viruses
79
CHEMICAL AGENTS Phenolics
- Disrupts membranes - Denatures proteins - Phenol, Amphyl, Lysol
80
Alcohols
- Won’t kill spores - Denatures proteins - Dissolves membrane lipids
81
Aldehydes
- Combines with proteins | - Used as embalming fluid
82
Quaternary ammonium compounds
- Disrupts membranes - May denature proteins - Low toxicity (antiseptics for skin and in mouthwash)
83
Gases
-Combine with proteins and deactivates them -Kills spores -Penetrates well -For items that cant be heated [important pic]
84
ANTIBIOTICS Selectively kills microbes
• May not work on all species
85
Has minimal effect on ______ cells
Eukaryotic | • Can be used inside patients
86
Interferes with ________ enzymes
Bacterial-specific • Cell wall synthesis • Bacterial ribosome
87
Bacteriostatic
inhibits growth
88
Bacteriocidal
kills cells
89
BIOLOGICAL AGENTS Probiotics
* “Good” bacteria * Displace disease organisms from tissues * Competes for niche
90
Bacteriophges
• Phages • Viruses that attack bacteria • Do not harm eukaryotes [PIC]