Lecture 8- Pharmacogenetics part I Flashcards

1
Q

pharmacogenetics and pharmacogenomics

A
  • also called precision medicine
  • using genetic and genomic info to more accurately predict drug responses
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2
Q

goals for personalized medicine

A
  1. identify genetic differences between people that affect drug response
  2. develop genetic tests that predict an individual’s response
  3. tailor medical treatments to the individual
  • increase effectiveness
  • minimize adverse side effects
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3
Q

pharmacogenetics

A
  • evaluates how an individual’s genetic makeup corresponds to their response to a particular medication
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4
Q

pharmacogenomics

A
  • combines pharmacogenetics with genomic studies
  • uses large groups of patients to evaluate how candidate drugs interact with a range of genes and their protein products
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5
Q

personalized medicine

A
  • = population stratification
  • looking at their genome
  • actual base changes that vary throughout a population
  • associated with drug being toxic and effective
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6
Q

pharmacogenetics

A
  • focused on known “major” drug metabolizing enzymes
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7
Q

pharmacogenetics and drugs

A

ultra-drug metabolizer

  • inactivation of the drug rapidly so it is ineffective

poor drug metabolizer

  • end up with toxic doses of the drug
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8
Q

pharmacogenetics and pro-drugs

A

ultra drug metabolizer

  • pro-drug is metabolized to active form of drug to end up with toxic doses off the drug
  • mutation in this gene required to activate the drug
  • metabolizes too much of the drug, end up with too much active drug

poor drug metabolizer

  • very little conversion of the pro-drug to the active form of the drug
  • drug is ineffective
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9
Q

main consequences of genetic polymorphisms

A

None

  • outside of coding and regulatory regions
  • synonymous substitution
  • no impact on function of protein

Decrease or loss of function of the encoded protein

Increase in function of the encoded protein

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10
Q

Decreased function

A
  • less enzyme may be produced (decreased regulation)
  • enzyme may not be complete (stop codon insertion)
  • enzyme may not be as stable
  • less binding affinity to substrate
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11
Q

Increased in function

A
  • more production (regulation or genomic copies)
  • more stable
  • more binding affinity
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12
Q

Tuberculosis (TB)

A
  • infectious disease caused by mycobacterium tuberculosis
  • attacks the lungs, can affect other parts of the body
  • airborne disease
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13
Q

Isoniazid

A
  • anti-biotic
  • first used to treat tuberculosis
  • metabolized in the liver via acetylation and then cleared from the body
  • high incidence of peripheral neuropathy caused by the drug reaching toxic levels
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14
Q

Looked at serum levels of isoniazid

A
  • Look at serum levels of active drug
  • Hoping for: bell curve with a normal distribution
  • everyone gets to the same serum concentration at the same time
  • Bimodal/trimodal graph
  • some difference in the population that is driving why they don’t reach same conc
  • Slower rate of acetylation: not cleared from the body
  • mutations within NAT2 that result in slower acetylation
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15
Q

NAT-1

A
  • N-acetyltransferase gene
  • little variation in the population
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16
Q

NAT-2

A
  • N-acetyltransferase gene
  • several alleles which cause variation in the rate of acetylation of various drugs including isoniazid (and caffeine)
  • Rapid acetylator –> considered wild-type
  • Slow acetylator –> arious a.a substitutions in NAT2 leads to reduced efficiency of the gene
17
Q

thiopurines

A

class of drugs used to treat:

  • acute lymphoblastic leukemia
  • inflammatory bowel disease
  • prevent organ rejection after transplantation
  • other autoimmune diseases
18
Q

thiopuring methyltransferase (TPMT)

A
  • enzyme that provides methylation of thiopurines
  • thiopurines are converted into thioguanine nucleotides (TGNs)
  • TGNs get inserted into DNA, inhibit DNA replication and can have toxic effects within the cell at high levels
  • reduced TPMT activity can lead to fatal toxicity
19
Q

TPMT clinical relevance

A
  • patients with two non0functional variant alleles are iven 6-10% of the standard dose of thiopurines
  • heterozygous patients can be started on full dose but must be closely monitored to avoid toxicity
20
Q

normal alcohol metabolism

A
  • Certain people don’t have a functioning ALDH2, get a build up of acetaldehyde à feeling not well
21
Q

ALDH2*2 mutation

A
  • 50% east asian have ALDH2*2
  • “alcohol flush”
  • acetaldehyde is a known carcinogen also found in cigarette smoke
  • increased risk for esophageal cancer
22
Q

disulfiram

A
  • trade name Antabuse
  • blocks ALDH2
  • used for alcohol dependence
23
Q

conclusions

A
  • patient responses to drugs: efficacy and toxicity
  • personalized medicine
  • cost of DNA sequencing has dramatically decreased
  • DNA mutations can change drug metabolism
24
Q

examples of pharmacogenetics

A
  • NAT-2: acetylation, isoniazid
  • TMPT: methylation, thiopurines
  • ALDH2: alcogol intolerance