Microscopy Flashcards

1
Q

What three parameters define microscopy?

A

Magnification
Resolution
Contrast

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2
Q

Magnification

A

This describes ratio of an objects image size to its real size

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3
Q

Resolution

A

This is the measure of the minimum distance of two distinguishable points

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4
Q

Contrast

A

Visible differences in brightness of color between parts of the sample.

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5
Q

What is the most commonly used microscope?

A

Bright Field Microscope

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6
Q

Bright Field Microscope

A

These are the simplest where illumination light is transmitted through the sample and the contrast generated by absorption of light in dense areas of the specimen

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7
Q

What are the types of light microscope?

A

Bright Field Miscroscope
Fluoresence Microscope
Phase/Differential Contrast
Confocal Microscope

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8
Q

Fluoroesence Microscope

A

This is an imaging technique visualing fluoresence from analyzed material with fluorophore excitation

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9
Q

What is the highest resoloution of light microscopy?

A

0.2 Microns

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10
Q

What is the light source for LM?

A

Halogen Lamp or LED emitting broad weavelength spectrum focused onto specimen by a condenser

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11
Q

Condenser

A

This serves to gather wavefronts from the microscope light source and concentrat them into a cone of light illuminating the specimen with uniform intensity

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12
Q

How is the specimen magnified?

A

Objective lense

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13
Q

Iris Diaphragm

A

This regulates numerical aperture, influencing resolution and contrast of the image.

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14
Q

What magnisifes the imagine fomred by the optical lense?

A

Ocular Lense then a tube lens

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15
Q

What does formation of final image depend on?

A

Absorption, reflection and scattering of light

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16
Q

How can contrast be improved?

A

Use light phase shifts induced by the specimen

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17
Q

Phase Contrast

A

This is a technique used for gaining contrast in a translucent specimen without staining it

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18
Q

Differential Interference Contrast

A

This is a technique based on an interference principle involving two coherent beams of light from the same source with image gradients by optical path gradients.

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19
Q

What is the sample preparation procedure for LM?

A

Tissues require sectioning
Fixation
Dehydration and cleaning
Specimen embedded into molten max
Microtome seconted into 5 micron thick
A colour dye is added

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20
Q

Why is fixation important?

A

Tissue structural preservation

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21
Q

Confocal Microscopy

A

This is a fluoresence imaging technique generating 3D images of living cells removing out-of-focus images

22
Q

Galvanometer Mirors

A

This is an ammeter indicating sensing of electric currents by deflection of light beams with a mirror.

23
Q

How does Confocal Microscopy work?

A

Emits a laser with monochromatic light for high-intensity illumating scanning specimen using galvanometer mirrors

24
Q

Focal Plane

A

This is a plane perpendicular to the axis of a lens or mirror and passing through the focus.

25
Q

Optical Sectioning

A

This is the process where a suitably deisgned microscpe can produce clear images of focal planes deep within a thick sample.

26
Q

What are more modern techniques of microscopy?

A

Deconvolution microscopy
Super resolution

27
Q

Deconvolution Microscopy

A

This is used to improve contrast/resolution of images captured in an optical microscope

28
Q

Super Resolution

A

This allows imaging of structures at resolutions beyond the diffraction limit of light

29
Q

How does deconvolution microscopy work?

A

Reversing optical blur formed by point-spread functions

30
Q

Point-Spread Functions

A

This describes how a point source of light spreads out as it passes thorugh the optical system forming an image.

31
Q

Electron Microscopes

A

This use beams of electrons instead of light to visualise electrons with higher resoloution due to the smaller wavelenght

32
Q

How much more resolute is EM?

A

1000x better

33
Q

How do EM work?

A

Thermionic emission gun emits electrons from heated filaments accelrated and focused by electric fields created by electrodes

34
Q

What is the lens strucure of EM?

A

Series of magnetic field generating coils interacting with charge and momentum of the electron, condenser, objective and projectior

35
Q

How do electrons interact with the sopecimen?

A

Formation of diffraction patterns by scattering, electron loss/excitation of energy transfer to the specimen, secondary electorn emission

36
Q

Why are EM kept in a vaccum?

A

Presence of gas molecules may perturb electron scattering/asborptions

37
Q

What are the two types of EM?

A

Transmission
Scanning

38
Q

Transmission Electron Microscopes

A

These use tungesten-based electron guns to grnerate images based on electrons passing through the specimen

39
Q

Thermionic Emission

A

This is the flow of charged particles called thermions from charged metals/metal oxides caused by vibrational energy overcoming electrostatic forces holding electrons to the surface

40
Q

How are TEM samples fixated?

A

Glutaraldehyde then Osmium tetroxide

41
Q

How do Glutaraldehyde and Osmium tetroxide work?

A

Covalenelty cross-link protein AA and provide contrast to samples by lipid covalent linkage

42
Q

Ultramicrotome

A

This is a method for cutting specimens into extremely thin slices called ultra-thin sections

43
Q

How is contrast improved in TEM?

A

Heavy metal stains like lead

44
Q

Scanning Electron Microscope

A

This is where low energy electron beams scan the surface of a sample

45
Q

How does SEM work?

A

Leads to sample interactions reflected and collected by a detector converting into electronic signals displayed on a screen, providing representation of topology.

46
Q

Critical Point Drying

A

This is a method of drhydrating biological tissue prior to SEM for removal of ethanol to minimise shrinkage

47
Q

Cell Fractionation

A

This is a technique of seperation of cellular organelles for study in isolation

48
Q

How is cell fractionation done?

A

Homogenization of the cell
Differential Centrifugation of organelles

49
Q

Homogenization

A

This is the mechanical disruption by shear force generation with mechanical action to release cellular components into a homogenate

50
Q

Differential Centrifugation

A

This is seperation of the cellular components bsaed on size, density, by spinning the clel at various speeds.

51
Q

Differential Centrifugation

A

This is seperation of the cellular components bsaed on size, density, by spinning the clel at various speeds.