Module 1-4 Flashcards

(68 cards)

1
Q

What activity primes neural circuits before sensory experience, and in which retinal cells does it involve graded potentials?

A

Subthreshold patterned activity, occurring before sensory experience, primes circuits. This activity involves graded potentials in photoreceptors and bipolar/amacrine cells.

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2
Q

Name the three sequential neural stations that visual signals traverse to reach the cortex, and what alternating columnar arrangement forms from inputs of the two eyes within the cortex’s primary input layer?

A

Anatomical Pathway:
Retina → LGN → Primary Visual Cortex (V1)
In layer 4 of V1, afferents from both eyes create alternating “ocular dominance columns.”

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3
Q

Which layers of the primary visual cortex are primarily driven by one eye, and which layers integrate inputs from both eyes to exhibit graded binocular responsiveness?

A

Physiological Correlates:
* Layer 4 neurons: Primarily driven by one eye.
* Layers 2, 3, 5, 6: Integrate inputs from both eyes, exhibiting graded binocular responsiveness.

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4
Q

Ocular Dominance Groups

A

Ocular Dominance Groups:
o Neurons are classified into seven groups based on their response to either the contralateral or ipsilateral eye.
o Group 1: Responds only to the contralateral eye.
o Group 7: Responds only to the ipsilateral eye.
o Group 4: Responds equally to both eyes.

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5
Q
  • Dark Rearing
A
  • Rearing in total darkness without patterned light input delays—but does not prevent—normal development. Upon later light exposure (even after typical critical period), acuity and ocular dominance patterns can recover to near-normal, unlike monocular deprivation.
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6
Q

V1 consequence strabismus

A
  • Loss of Binocularity in Supragranular and Infragranular Layers: In V1 layers 2–3 and 5–6, binocular neurons typically respond to both eyes. In strabismus, most neurons become monocular, responding only to one eye, disrupting binocular convergence.
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7
Q

Ubiquitin Ligase Ube3a:

A

Target specific proteins that typically helps remove AMPA receptors (AMPA-Rs) from the synapse, allowing these receptors to stay at the synapse.

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8
Q

Neurexins and Neuroligins

A

Neurexins (presynaptic) & Neuroligins (postsynaptic): These proteins mediate trans-synaptic adhesion, helping to organize the structure of the synaptic cleft and regulate synaptic function.

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9
Q

mTor Pathway:

A

This protein ensures that new receptors and structural proteins are produced where and when needed for plasticity.

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10
Q

Which signaling cascade is initiated by TrkB activation, and which transcription factor does it help activate in conjunction with CaMK signals?

A

BDNF released from active afferents binds TrkB, activating Ras → RAF → ERK cascade. Converges with CaMK signals to drive CREB-mediated gene expression, embedding plastic changes in the transcriptional state.

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11
Q

Four Principal Barriers to CNS Regeneration

A

Four Principal Barriers to CNS Regeneration
1. Neuron Loss: Local injury in brain tissue frequently triggers apoptosis or necrosis of neurons whose axons or cell bodies are damaged.
2. Glial Inhibition: Reactive astrocytes and oligodendrocytes secrete inhibitory molecules (e.g., chondroitin sulfate proteoglycans, myelin‐associated inhibitors) that actively block axon extension (hinder axon growth and repair). Preventing the regeneration of damaged neurons in the central nervous system (CNS).
3. Restricted Neural Stem Cells: Although adult neural stem‐cell niches exist (e.g., subventricular zone, hippocampal dentate gyrus), progenitors in most brain regions remain quiescent, with limited proliferation, migration, or differentiation into functional neurons.
4. Immune‐Mediated Cytokines: Microglia and astrocytes release inflammatory cytokines and reactive oxygen species that further impede regrowth and can exacerbate tissue damage.

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12
Q

Functional Reorganization After Stroke (No True Repair)*

A

Recovery without regrowth: Brain function improves even without tissue regeneration.
* Latent circuits unmasked: Nearby silent brain circuits activate to take over lost functions.
* Synaptic plasticity: Neuron connections get stronger or weaker to adapt.
* Modest sprouting: Some surviving neurons grow small new branches to help reconnect.
* Opposite hemisphere helps: The undamaged side of the brain supports the affected side

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13
Q

Three Types of Neuronal Repair

A
  1. Axonal Regrowth (Best in PNS)
    o Surviving neurons regrow severed axons.
    o It happens mostly in peripheral nerves.
    o Involves reactivation of developmental growth programs.
  2. Sprouting of Surviving Neurons (CNS)
    o Damaged central neurons try to reconnect by growing new branches.
    o Blocked by glial scars and inflammation, so repair is limited.
  3. Neurogenesis (Rare)
    o New neurons are made, mainly in olfactory system.
    o Requires stem cells, supportive environment, and proper guidance cues.
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14
Q
  1. Necessary Criteria for CNS Replacement:
A

o Presence of Multipotent Stem Cells
o Permissive Microenvironment: Local cues that support proliferation, differentiation, and survival of new neurons.
o Recapitulation of Developmental Processes: Migratory pathways, process outgrowth, synaptogenesis, and long‐distance targeting must be preserved or reestablished.

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15
Q

Recovery of Sensory Function After Nerve Injury
* Protopathic Sensation

A

(basic touch, pressure)→ Recovers quickly
→ Uses large, simple fibers
→ Fast but imprecise regrowth
* Epicritic Sensation (fine touch, temperature, pain)
→ Recovers slowly
→ Uses small, specialized fibers
→ Needs precise molecular guidance for accurate reconnection

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16
Q
  • Epicritic Sensation
A

(fine touch, temperature, pain) → Recovers slowly
→ Uses small, specialized fibers
→ Needs precise molecular guidance for accurate reconnection

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17
Q

Peripheral Nerve Repair

A
  • Schwann Cells:
    o Form “bands of Büngner” to guide regrowing axons
    o Secrete growth factors (early: protopathic, later: epicritic)
    o Provide a growth-friendly surface
  • Macrophages:
    o Clear damaged myelin (Wallerian degeneration)
    o Release signals to support Schwann cells
  • Wallerian Degeneration:
    o Damaged distal axon breaks down
    o Basal lamina remains and acts as a scaffold for regeneration
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18
Q

CNS Injury

A

Glial Cell Responses and Scar Formation
* Astrocytes: Hypertrophy, and proliferation around lesion border.
o Glial Scar: Astrocyte processes interweave, depositing molecules that inhibit axon extension.
Why the Adult CNS Doesn’t Regenerate Well
* No Pro-Growth Signals: CNS neurons don’t activate growth genes like PNS neurons do.
* No Schwann-Like Help: Lacks bands-of-Büngner, ECM support, and growth factors.
* Multiple Barriers:
o Neuron death, excitotoxicity, autophagy issues
o Glial scars block axon growth
o Missing developmental cues
* Result: Axons avoid the injury site and fail to reconnect.
* BBB Breakdown: Injury opens the blood–brain barrier, letting immune cells and proteins into the brain, worsening damage.

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19
Q

Neurogenesis SVZ Subventricular Zone and SGZ (Sugranular zone in hippocampus)

A

Neural stem cells (NSCs) still exist, but only in specific regions:
* SVZ (Subventricular Zone) → new neurons migrate to the olfactory bulb (important for smell).
* SGZ (Subgranular Zone in the hippocampus) → new neurons become part of the hippocampus, which is important for memory.
Neurogenic Response to Injury: Limited and region-specific; injury can transiently boost proliferation in niche zones, but few new neurons survive or integrate outside these areas.
Newborn neurons (neuroblasts) travel to the olfactory bulb through a pathway called the RMS.

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20
Q

Long-Term Memory Subtypes . Nondeclarative (Implicit)

A
  1. Nondeclarative (Implicit)
    * Unconscious; “knowing how”
    * Types:
    o Motor skills (e.g., biking)
    o Perceptual skills (e.g., sound discrimination)
    o Habits (e.g., conditioning)
    * Brain areas: Basal ganglia, cerebellum, sensorimotor cortex
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21
Q

Declarative (Explicit)

A
  • Conscious; “knowing that”
  • Types:
    o Episodic: Personal events; time-stamped (hippocampus)
    o Semantic: Facts and concepts; decontextualized (temporal/frontal cortex)
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22
Q

Amygdala and Fear Learning

A

Amygdala learns fear by pairing a neutral sound with a shock.
* After learning, the sound alone causes fear (like freezing).
* Tone and shock info go to the lateral amygdala.
* Learning happens because connections get stronger when both signals arrive together.
* Then, the amygdala tells the hypothalamus (for stress) and brainstem (for freezing) what to do.

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23
Q

Universal Role of NMDA-AMPA in LTP
*

A

Hippocampus: Needed for memory formation.
* Amygdala: Needed for fear learning.
* Cortex & Basal Ganglia: Needed for habits and perception

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24
Q
  1. Transcortical Pathway
A

(for new or conscious actions)
* Used when you’re learning, thinking, or following instructions
* Involves prefrontal cortex (planning) and hippocampus (explicit memory)
* Route: Sensory → motor association areas → motor cortex → action

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25
2. Basal Ganglia–Thalamocortical Loop
for automatic or fine-tuned actions) * Used for movement selection and control * Direct pathway: allows movement (disinhibits thalamus) * Indirect pathway: fine-tunes or suppresses movement * Key players: o Caudate (plans) o Putamen (motor execution) o GPi (main output: inhibits movement unless told not to) o Thalamus (excites motor cortex if not blocked)
26
Dopamine Main Pathways:
Mesolimbic: VTA → nucleus accumbens (reward center) * Mesocortical: VTA → prefrontal cortex (decision-making)
27
Basal Ganglia and Habits
* New skill → Caudate nucleus: conscious, effortful * Practiced habit → Putamen: automatic, fast * Basal ganglia help turn deliberate actions into habits Early = thinking Later = automatic
28
Which brain regions detect discriminative cues and relay them to the basal ganglia; through what pathway do basal ganglia outputs shape motor responses; and which dopaminergic projection signals reward to limbic and cortical targets?
* Cue (Discriminative Stimulus): Detected by sensory brain areas and sent to the basal ganglia. * Action (Response): Controlled by motor areas, influenced by output from basal ganglia via the thalamus. * Reward (Reinforcer): Dopamine release from the VTA to the nucleus accumbens and prefrontal cortex signals success.
29
Operant Conditioning – Key Elements
1. Cue → Sensory cortex → Basal ganglia input 2. Action → Motor cortex, guided by basal ganglia output 3. Reward → Dopamine burst from VTA to Nucleus Accumbens & PFC → Learning happens when dopamine strengthens active S→R connections.
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Cortical Roles in Learning & Movement
* Primary Motor Cortex: Executes fine movements; improves with practice. * Supplementary Motor Area: Plans and automate movement sequences. * Premotor Cortex: Links movements to visual or auditory cues. * Ventral Premotor Cortex: Mirror neurons support learning by imitation.
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Cortical Mechanisms for Recognizing and Remembering Stimuli
* Ventral Stream (What) → inferior temporal cortex helps recognize objects; damage → visual agnosia. * Dorsal Stream (Where) → posterior parietal cortex helps locate objects; damage → spatial perception problems.
32
Extrastriate Cortex
* Sensory trace * Fades fast (ms–seconds) * High fidelity, passive * Modality-specific (e.g., visual, auditory)* Perceptual learning = long-term changes in extrastriate
33
* Semantic dementia location
= loss of word/object knowledge → damage in anterolateral temporal cortex
34
Hippocampus & Memory Consolidation
Temporary role: Needed early for relational/episodic memory * Later, memories stored in neocortex (temporal gradient) * Binds elements: places, cues, context into a memory
35
ventromedial prefrontal cortex (vmPFC)
is essential for flexible updating of stimulus-outcome associations.
36
Overt vs Covert attention
* Overt attention: Involves eye movements (saccades) to bring an object into central vision (fovea) for detailed processing. * Covert attention: Enhances processing of peripheral areas without shifting the eyes.
37
Spatial Attention
* Covert attention = paying attention without moving your eyes. * It boosts neuron firing when attention is directed to a stimulus inside the neuron's receptive field. * Brain areas involved: LGN, V1/V2, V4, MT/V5. * With two stimuli in the same field: o Attention to preferred stimulus → firing goes up. o Attention to non-preferred stimulus → firing goes down.
38
Feature-Based Attention
* Attention to a specific feature (like red color or motion) boosts responses everywhere, not just where you look. * Neurons tuned to that feature fire more. * Areas like V4 and MT show similar effects for both spatial and feature-based attention.
39
Attention as RF Shrinkage
– Quick Summary * Attention shrinks receptive fields to focus on the target stimulus. * Contrast = how visible/intense the stimulus is. Two Models: * Response-Shift: Attention acts like more contrast (shifts response curve). * Response-Gain: Attention boosts firing at all contrast levels. When? * Small stimulus → Response-Shift * Large stimulus → Response-Gain
40
Normalization-Based Attention
Quick Summary * All types of attention (space, features) may work by changing how neurons balance inputs. * Two mechanisms: o Input-gain: Boosts incoming signals. o Output-normalization: Reduces suppression from competing inputs → stronger response.
41
Main Brain Areas Controlling Attention
* LIP (Lateral Intraparietal Area) – in the parietal cortex * FEF (Frontal Eye Field) – in the frontal cortex * SC (Superior Colliculus) – in the midbrain * Together, they control both: o Overt attention (eye movements) o Covert attention (shifting attention without moving eyes)
42
Covert Attention
* LIP and SC show activity without eye movement. * All three (LIP, FEF, SC) activate during visual search tasks.
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FEF & Visual Scanning
Neurons in FEF fire in clockwise scanning patterns. * FEF neurons fire earlier when the target is next in a search sequence, even before eyes move.
44
Inter-Areal Synchrony
* Attention increases synchronization between brain areas (e.g., local field potential (LFP) signals in LIP, FEF, SC, and visual cortex). * Reflects top-down control from attention areas to sensory areas.
45
Overt Attention
(Eye Movements) * LIP, FEF, and SC predict where the eyes will go before a saccade (rapid eye movement).
46
___ and frontal ____ areas show retinotopic maps from attention alone (“attention-otopy”).
* Parietal (IPS) and frontal (FEF) areas show retinotopic maps from attention alone (“attention-otopy”).
47
Blankenburg PPC
Blankenburg: Core Summary * Goal: Test if right PPC controls visual cortex via top-down attention (using TMS–fMRI). * Method: TMS applied during attention tasks (left/right/neutral); fMRI measured brain activity. * Result: High-intensity TMS to right PPC boosted attention effects in visual cortex, but only when attention was active. * Conclusion: Right PPC causally modulates visual cortex during attention — a top-down, state-dependent effect.
48
Interneurons
* Inhibitory GABAergic neurons, ~10% of CA1, highly diverse (21+ types). * Show spatial tuning, often aligned with visual cues; some have off-fields. * Fire at specific phases of the theta rhythm (~4–12 Hz), important for timing. * Medial septum helps control theta rhythm and movement speed. * Some interneurons encode running speed (“speed cells”), aiding self-localization. * Interneurons actively shape place/grid cell activity and must be included in navigation models.
49
Place Cells -> Interneurons -> Head Direction Cells -> Grid Cells ->
Place Cells -> CA1 hippocampus Interneurons -> CA1 Head Direction Cells -> Postsubiculum Grid Cells -> medial entorhinal cortex (mEC)
50
Where are grid cells found?
→ Medial entorhinal cortex (mEC)
51
Which area has object-dependent place fields?
→ Lateral entorhinal cortex (lEC)
52
Which brain area has weak or task-related spatial signals instead of true place fields?
→ Striatum
53
Which area shows stable, selective place-like cells in the thalamus?
→ Rostral thalamic nuclei (e.g., anteromedial)
54
Which septal area shows place-like activity?
→ Lateral septum
55
What kind of spatial signals are found in the subiculum?
→ Mixed encoding of position, heading, and speed
56
Which area may integrate visual and spatial inputs but is not purely spatial?
→ Anterior claustrum
57
What type of cells are found in the postrhinal cortex?
→ Spatially modulated but not stable place fields
58
Which area supports entorhinal theta rhythm but does not have place-like cells?
→ Medial septum
59
Which cortex shows spatial tuning related to task actions like odor ports?
→ Orbitofrontal cortex (OFC)
60
Boundary/Border Cells
BVCs fire when a boundary is at a specific distance and direction (allocentric). * Found in: Subiculum, mEC, Presubiculum, Rostral Thalamus, Claustrum. * Subiculum: Fires at far distances; mEC: Fires very close to walls (~10 cm). * Perimeter cells: Fire along all boundaries. * Function: Provide geometric input to shape hippocampal place fields.
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🧠 Key Spatial Cell Types – Main Points
Object Cells * Found in lateral entorhinal cortex (lEC) and anterior claustrum * Fire near objects and often remember object locations * ACC trace cells fire even after objects are removed (long-lasting memory) Goal Cells * Not clearly found in hippocampus * Medial prefrontal cortex (mPFC) has goal-centered fields * Bats show goal-direction cells (fire for direction + distance to hidden goal) * Orbitofrontal cortex (OFC): More about reward value than spatial goals Conjunctive Cells * Encode combinations: location + direction, or location + speed * Found in presubiculum, retrosplenial cortex, mEC * Help integrate movement with spatial position Movement-/Action-Sensitive Cells * PPC, RSC, and striatum: Code actions, movement sequences, and egocentric cues * Help translate movement into map coordinates
62
What do grid cells do in cognitive space?
Provide a stable metric
63
What supports map switching across contexts?
→ Remapping
64
Where are hexadirectional signals found in humans?
→ Entorhinal cortex
65
Which brain region indexes positions in abstract spaces?
→ Hippocampus
66
What happens first in AD, MEC or CA1 problems?
* Grid cell dysfunction in MEC is an early AD biomarker. * Combining VR tasks and brain imaging may improve early detection and intervention.
67
Noradrenergic System:
Locus coeruleus neurons release norepinephrine broadly, modulating arousal and attention.
68
Histaminergic System:
Hypothalamic neurons release histamine throughout the brain.