Module 3/4: Physiology Of The Respiratory System Flashcards
(275 cards)
Review: Proteins structure
• Building blocks: Amino acids (20 standard AAs)
• Sequence of AAs (primary structure):
— Based on genetic information (DNA mRNA polypeptide)
• Properties of R-group of amino acids determines the
three-dimensional structure of polypeptides
— Secondary structure: Common motifs (-helix, -sheet)
— Tertiary structure: Most stable 3-D arrangement of a
polypeptide
Quaternary structure: 3-D arrangement of multiple
polypeptides in multi-subunit proteins • The structure is optimized to serve a specific
function
Globular Proteins
Review
Very diverse, with respect to • Structure
• The structure is optimized to serve a specific function • Function
• Enzymes
• Ligand-binding proteins (e.g., hemoglobin – binding oxygen)
• Regulatory proteins (e.g., insulin)
• Stabilizing proteins
Globular proteins are compact, water-soluble proteins that perform a wide range of vital functions in the body. They act as transporters, such as hemoglobin, which carries oxygen in the blood. Many globular proteins function as enzymes, like amylase, which helps break down starch during digestion. They also play a key role in defense, with antibodies protecting the body against infections. Some, like insulin, act as regulators by controlling processes such as blood sugar levels, while others, like actin and myosin, are involved in movement by enabling muscle contraction. Their diverse roles make globular proteins essential to nearly every biological process.
Ligand-Binding Proteins
Review
• Ligand:
— Binds at a specific site that is complementary to the shape of the
ligand (lock and key analogy: Binding site = lock, ligand = key)
— Not covalently bound • Proteins can have multiple binding sites for the same ligand (e.g.,
hemoglobin)
— Proteins can have multiple binding sites for multiple ligands (each
uniquely complementary to the ligand)
— Purpose of ligands:
—Reason for need of protein (e.g., storage or transport of oxygen, storage of
minerals)
— Allosteric regulation (e.g., BPG affecting hemoglobin)
The Process of Ligand-Binding
Ligands are molecules that bind to another molecule, usually a larger one like a protein (often a receptor or enzyme). The binding is usually specific — like a key fitting into a lock.
Equilibrium between free protein (P) and
P + L ligand (L) and protein-ligand complex
(PL) PL
• LeChâtelier principle:
— Add more ligand —> equilibrium shifts toward
more PL
— Remove ligand —> equilibrium shifts away
from PL side of equation to free P and L
Le Châtelier’s Principle states that when a system at equilibrium is disturbed, it will adjust (shift) to counteract the disturbance and re-establish equilibrium.
Relationship to ligand-binding =
You’re plotting how much PL forms at different ligand concentrations.
At high [L]: Most protein is bound to ligand → [PL]/[P]total approaches 1 (100%).
At low [L]: Few protein-ligand complexes → [PL]/[P]total is near 0.
*** Le Châtelier’s Principle helps you predict which way the binding shifts.
Adding ligand → more PL forms.
Removing ligand → PL breaks apart.
The binding curve shows how much PL is formed depending on how much ligand you add.
• Graph:
— Y: Number of PL out of total P(1 = 100%)
— High [L] more PL
— Low [L] less PL
• Kd
— = [L] when 50% of binding sites are
occupied
— Gives a measure of affinity of the protein
(the binding site) for ligand
The Relationship between Kd and Affinity
*slide 8
• A and B are different proteins that bind the same ligand
• A has a Kd of 2 M • B has a Kd of 6 M
• A has a higher affinity for L than B
• General statements:
• Low Kd means high affinity for the
ligand
• High Kd means low affinity for the
ligand
** look at graph
What is the Desired Kd? (Kd and affinity explained further)
• It depends on the function of the
protein and the ligand
• It has been optimized to best serve
the function
• Depends on the structure of the
protein (primary – quaternary)
Kd (dissociation constant) is a measure of how tightly a ligand (e.g. a drug, hormone, or antibody) binds to its target (e.g. a receptor or enzyme).
It represents the concentration of ligand at which half of the available binding sites are occupied.
Affinity refers to the strength of the interaction between a ligand and its binding partner.
Lower Kd → Higher affinity
Higher Kd → Lower affinity
If a ligand binds very tightly (high affinity), it dissociates slowly and has a low Kd.
If it binds weakly (low affinity), it dissociates quickly and has a high Kd.
High affinity means _____ Kd
Low affinity means ____ Kd
Low
High
The Structure of Heme
Fe+2 ion attracts ?
O2
• Fe2+ had one electron in outermost
shell that can easily be removed to form Fe3+
• O2 LOVES electrons (is a strong
oxidizing agent)
Oxygen (O₂) binding to hemoglobin induces a conformational change between two major states:
Tense State:
Relaxed state:
Tense (T) state:
Low affinity for O₂
Stabilized when O₂ is absent
Hemoglobin is more rigid due to more salt bridges
Relaxed (R) state:
High affinity for O₂
Stabilized when O₂ binds
Binding of O₂ to one subunit breaks salt bridges, causing a shift in quaternary structure that makes it easier for other subunits to bind O₂ (cooperative binding)
O₂ binding shifts hemoglobin from the T state (low affinity) to the R state (high affinity), enhancing further O₂ uptake through positive cooperativity.
T state = clamp is tight, hard to open (hard to bind O₂).
Once one O₂ binds, it loosens the clamp → R state → easier for more O₂ to bind.
SUMMARY:
🔴 Tense (T) State
Low affinity for oxygen
Hemoglobin is in this form before oxygen binds
The structure is tight, making it harder for O₂ to bind
🟢 Relaxed (R) State
High affinity for oxygen
When one oxygen molecule binds, hemoglobin changes shape (conformational change)
This makes it easier for more oxygen to bind — a process called cooperative binding
Oxygen binding to hemoglobin causes a conformational change from the T state to the R state, increasing its ability to bind more oxygen efficiently.
**Cooperative Binding
After a Heme group binds its first O 2 molecule…..the hemoglobin molecule
changes shape that increases the ability to bind the second O 2 molecule • When it binds the second O 2 molecule….it changes shape again to increase
the ability to bind the third O2 molecule
Hemoglobin functions optimally in the lungs as a _____ affinity protein and in the tissue as a ___ affiliate protein
High
Low
In the lungs, where oxygen levels are high, hemoglobin has a high affinity for oxygen — it binds oxygen tightly.
In the tissues, oxygen levels are low, so hemoglobin’s affinity decreases, and it releases oxygen.
Myoglobin: _________ curve
Hyperbolic
• Higher affinity than hemoglobin
• Optimized for storage
• Monomer
Myoglobin: Hyperbolic Curve
Binds oxygen quickly and strongly
Has high affinity, even at low O₂ levels
No cooperativity (binds just one O₂ molecule)
Curve shape: Smooth and hyperbolic
Hemoglobin: _________ curve
Sigmoid
• At low pO2: low affinity
• At high pO2: high affinity
• Optimized for transport
• Tetramer
Shows cooperative binding: binding one O₂ makes it easier to bind the next
Curve shape: Sigmoid (S-shaped) due to T → R state transition
Allows hemoglobin to pick up oxygen in the lungs (high O₂) and release it in tissues (low O₂)
Transfer of O2 from Hemoglobin to Myoglobin
• Myoglobin: P50 ≈ 0.1 kPa
• Hemoglobin: P50 ≈ 2.6 kPa
• The oxygen not used in muscle
tissue will move from the protein
with the lower affinity to the
protein with the higher affinity
• O2 will be released from Mb,
when muscle close to anaerobic
(back up system for low O2
situations)
The steeper the curve on a graph = higher the _____
Affinity
Lower the curve = lower affinity
Effect of pH O2-Binding by Hb
• The higher the pH, the
higher the affinity
(lowest P50)
or
• The lower [H+], the
higher the affinity
(low [H+] high pH
Becuase higher pH means its less acidic
High H+ means its more acidic
What is affinity?
High affinity = hemoglobin strongly binds to oxygen and holds onto it.
Low affinity = hemoglobin binds oxygen weakly and is more likely to release it.
Release of CO2 into a solution leads to an _______ in [H+] and thus a ______ in pH
Increase in H+
Decrease in pH
- CO₂ is released by cells during metabolism.
- In the blood, CO₂ reacts with water to form carbonic acid (H₂CO₃).
- Carbonic acid dissociates into:
Hydrogen ions (H⁺)
Bicarbonate ions (HCO₃⁻) - More H⁺ = lower pH, because pH is a measure of hydrogen ion concentration.
pH is inversely related to H⁺ concentration.
So, as CO₂ increases, more H⁺ is produced → pH drops (becomes more acidic).
pH Change Leads to More Release of O2
Best function of Hb:
• In lungs: High affinity preferred to get as much as possible O2 picked up
—>High pH means higher affinity
• In tissue: Low affinity preferred to get more O2 delivered for cellular respiration —> Low pH means lower affinity
Low pH (acidic, high H⁺) → hemoglobin releases O₂ more easily
High pH (alkaline, low H⁺) → hemoglobin holds on to O₂ more tightly
What Happens in High pH (Alkalosis)?
1. Less H⁺ in the blood
2. Hemoglobin stays in the R (relaxed) state, with high affinity for oxygen
3. It binds oxygen well in the lungs but doesn’t release it easily in tissues
4. Result: Poor oxygen delivery where it’s needed
Adapting to High Altitude: Short- and Longterm
• High altitude:
—‘Thin air’ pO2 lower than at sea level
—Less O2 available
—> feeling tired, low energy, potentially altitude sickness (headache, nausea)
• Within 24-48 hours: —Increase in BPG
—> Net supply of O2 increases to approximately ‘normal’ levels —> Less O2 reserves for ‘fight or flight’ situations
• After several weeks:
— Increase in O2 reserves through an increase in Hb molecules via an increase in
red blood cells (BPG drops back to 5 mM)
Effect of Carbon Monoxide Poisoning
Carbon monoxide (CO) competitively binds at O2-binding site, but forms a much stronger bond than O2
Since CO is tightly bound,
• Fewer binding sites are available to bind O2
• The switch to the low-affinity state is not happening,
as some binding sites continue to carry a ligand
—> Very little oxygen is released in the tissue <10%
• The effect of CO-poisoning:
Increase in affinity (lowering of P50, steeper curve)
Micronutrient Deficiencies Affecting Hemoglobin
Deficiency in
• Iron: —> Iron-deficiency anemia
• Folate and Vitamin B12: —> Megaloblastic anemia
Large, oval-shaped erythrocytes; some nucleated
erythrocytes (these deficiencies affect DNA replication)
• Vitamin A and C, zinc: —>can contribute to anemia or make
symptoms worse
T or F
Anemia does not affect the affinity of hemoglobin itself for oxygen
T
In fetal hemoglobin vs adult hemoglobin
Fetal hemoglobin (HbF) has a ______ affinity, lower P50
Higher
Oxygen moves form the lower affinity protein to the higher affinity protein
Fetal Hemoglobin (HbF) vs Adult Hemoglobin (HbA)
The basis for the altered function is a
different structure:
• Consists of 2 a- (alpha)and 2 y-subunits (gamma); the subunit is
encoded on a different gene and has a slightly
different primary structure than the —> subunit
• There is no binding site for BPG
Replaced with HbA within a few months of birth as the red blood cells are replaced (the gene for the y-subunit becomes suppressed and the gene for the beta-subunit is activated)