Molecular Flashcards

(53 cards)

0
Q

2 a.a. that histones are rich in

A

Lysine & arginine

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1
Q

neg charged DNA that loops around positively charged histone octamer consisting of [H2A, H2B, H3, H4] x 2

A

nucleosome

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2
Q

what histone binds to the nucleosome and to linker DNA to stabilize chromatin fiber

A

H1

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4
Q

3 necessary a.a. for purine synthesis

A

glycine, aspartate, glutamine

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5
Q

enzyme that converts ribonucleotides to deoxyribonucleotides in pyrimidine synthesis

A

ribonucleotide reductase

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6
Q

carbamoyl phosphate is involved in which 2 metabolic pathways…

A

de novo pyrimidine synthesis

urea cycle

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7
Q

drug that inhibits dihydroorotate dehydrogenase causing a build up of carbamoyl phosphate and low orotic acid (pyrimidine synth)

A

Leflunomide

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8
Q

2 drugs that inhibit IMP dehydrogenase in purine synthesis

A

Mycophenolate

Ribavirin

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9
Q

drug that inhibits ribonucleotide reductase

A

hydroxyurea

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10
Q

2 drugs that inhibit de novo purine synthesis

A

6-mercaptopurine & it’s pro drug azathioprine

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11
Q

drug that inhibits thymidylate synthase thereby decreasing dTMP

A

5-fluorouracil

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12
Q

3 drugs that inhibit dihydrofolate reductase (decr dTMP) in humans, bacteria, protozoa

A

humans- methotrexate
bacteria- TMP
protozoa- pyrimethamine

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13
Q

auto recessive deficiency of adenosine deaminase: excess ATP & dATP causes feedback inhib of ribonucleotide reductase - prevents DNA synth - lowers lymphocyte count

A

SCID

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14
Q

defective purine salvage d/t absent HGPRT which converts hypoxanthine to IMP and guanine to GMP to recycle purines - results in excess uric acid & de novo purine synth
X linked recessive
causes intellect disability, self mutilation, aggression, hyperuricemia, gout, dystonia

A

Lesch Nyhan syndrome

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15
Q

AUG

A

methionine start codon in eukaryotes

codes for N-formylmethionine in prokaryotes - stimulates neutrophil chemotaxis

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16
Q

UGG

A

tryptophan

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17
Q

drug that inhibits prokaryotic enzyme topoisomerase II & IV

A

fluoroquinolones

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18
Q

prokaryotic DNApol with 5’ to 3’ synth and 3’ to 5’ exonuclease proofreading

A

DNA polymerase III

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19
Q

prokaryotic DNApol that degrades RNA primer & replaces it with DNA
same functions as DNApol III but also excises RNA primer with 5’ to 3’ exonuclease

A

DNA polymerase I

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20
Q

catalyzes formation of phosphodiester bond within a strand of dsDNA (joints Okazaki fragments)

A

DNA ligase

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21
Q

RNA-dependent DNA pol that adds DNA to 3’ ends of chrom to avoid loss of genetic material with every duplication (euk only)

A

telomerase

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22
Q

DNA mutation with nt substitution causing changed a.a.

A

missense point mutation

23
Q

DNA mutation with nt substitution causing early stop codon

A

nonsense point mutation

24
Q

low glucose - incr adenylyl cyclase activity - incr generation of cAMP from ATP - activates catabolite activator protein - transcription increases

A

MOA for lac operon in E. coli with glucose absent to do lactose metabolism

25
high lactose - unbinds repressor protein from repressor/operator site - transcription increases
MOA for lac operon in E. coli with high lactose to do lactose metabolism
26
defective nt excision repair in G1 preventing repair of pyrimidine dimers from UV light exposure
xeroderma pigmentosum
27
defective mismatch repair in G2 phase of cell cycyle
hereditary nonpolyposis colorectal cancer
28
mutated non homologous end joining to bring together 2 ends of DNA fragments to repair ds breaks
ataxia telangiectasia | Fanconi anemia
29
UGA, UAA, UAG
mRNA stop codons 'U Go Away' 'U Are Away' 'U Are Gone'
30
RNA polymerase I
makes rRNA in eukaryotes
31
RNA polymerase II
makes mRNA in eukaryotes | opens DNA at promoter site
32
RNA polymerase III
makes tRNA in eukaryotes
33
toxin found in Amanita phalloides (death cap mushrooms) that inhib RNApol II - causes severe hepatotoxicity
alpha amanitin
34
drug that inhibits RNApol in prok
Rifampin
35
drug that inhib RNApol in both prok & euk
Actinomycin D
36
prokaryotic RNA polymerase
1 RNA polymerase (multisubunit complex) makes all 3 kinds of RNA
37
processes that occur in the nucleus to hnRNA to modify it into mRNA
capping of 5' end (add 7-methylguanosine cap) polyadenylation of 3' end (AAUAAA) splicing out introns
38
where does translation occur in the cell?
cytosol
39
function of snRNPs in spliceosome forming a lariat
splicing of pre-mRNA to remove introns
40
Ab to spliceosomal snRNPs
anti-Smith Ab highly specific for SLE
41
anti-U1 RNP Ab
mixed connective tissue disease
42
3 base sequence at 3' end of all tRNA's to which the a.a. binds
CCA
43
T arm of tRNA
thymine, pseudouracil, cytosine | necessary for tRNA-ribosome binding
44
D arm of tRNA
dihydrouracil residues needed for tRNA recognition by correct aminoacyl-tRNA synthetase
45
aminoacyl-tRNA synthetase
1 per a.a. | uses ATP to check a.a. before & after binding tRNA (if incorrect, it hydrolyzes the bond)
46
GTP hydrolysis with initiation factors to assemble 40S with initiator tRNA
protein synthesis initiation
47
eukaryotic ribosomes
40S + 60S = 80S
48
prokaryotic ribosomes
30S + 50S = 70S
49
protein synthesis elongation A site
aminoacyl-tRNA binds here (except for methionine)
50
protein synthesis elongation P site
accommodates growing peptide - peptide bond formation
51
protein synthesis elongation E site
holds empty tRNA as it exits (translocation)
52
removal of N- or C-terminal propeptides from zymogen to make mature protein
trimming posttranslational modification
53
intracell protein that facilitates protein folding
chaperone proteins