MP321 week 3 Flashcards
(114 cards)
HIV viral replication steps
1- fusion of HIV to the host cell surface
2- HIV RNA reverse transcriptase , integrase and other viral proteins enter the host cell
3- viral DNA is formed by reverse transcription
4- viral DNA is transported across the nucleus and integrates into the host DNA
5- new viral RNA is used as genomic RNA and to make viral proteins
6- new viral RNA and proteins move to the cell surface and a new, immature, HIV forms
7- the virus matures by protease releasing individual HIV proteins
key HIV enzymes
protease
reverse transcriptase
integrase
inhibit these and stop HIV (viral) replication
define NRTIs
nucleoside reverse transcriptase inhibitors
how do NRTIs work
mimic the natural nucleosides that are incorporated into the double helix chain formation of DNA-RNA and DNA
NRTI prodrug and activated only viral kinase
target polymerase during transcription
prodrugs metabolised to give non-functional nucleosides
when NRTIs are incorporated into growing chain it causes chain termination
no more HIV can be made and CD4 cells not further compromised
to incorporate the nucleoside into the chain it needs to be converted to a nucleotide
the hydroxyl group enables the molecule to be seen and incorporated into the chain, the changes from hydroxyl to N3 in structure leads to chain termination
define prodrug
a biologically inactive compound which can be metabolized in the body to produce a drug
what is remdesivir used to treat
acute, severe covid-19, works differently to other NRTIs
chemistry of remdesivir
3’ hydroxyl group present - so a nonobligate chain terminator
although theoretically may bond to another nucleoside, it does not
note how others have this functional group removed to be active
it still works because it has a bulky group which hides and blocks the hydroxyl group
adenosine like most involved in base pairing with uracil
as this is very similar to how adenosine makes base pairs, this possibly is why it gets incorporated by viral polymerase - enables transcriptase to see and recognise
as it has a carbon - carbon bond it is more stable against nucleases as not a semi-aminal bond
define NNRTIs
non-nucleoside reverse transcriptase inhibitors
NNRTIs
Non-nucleoside reverse transcriptase inhibitors
Known as allosteric inhibitors (holy grail of inhibitor type)
Bind to a lipophilic pocket at the base of the “thumb” area of the RT enzyme
Conformationally prevents the enzyme from allowing the single strand of RNA to be transcribed
Prevents replication and protects CD4 cells
useful as they don’t block natural active site
targets polymerase during transcription as allosteric inhibitors
protease inhibitors (PI)
large proteins made following transcription and translation
proteases are inhibited by other small molecules
processed into smaller proteins to make virion
protease cleaves the larger proteins
hydrolysis of the protein peptide bond
HIV protease is a much smaller enzyme than the equivalent host aspartate proteases
Cleaves substrates N-terminal to proline residues unlike mammalian proteases (selectivity)
Tyr-Pro was identified as a cleavage site for the HIV protease
Rationale for inhibitor design was based on Phe-Pro or Tyr-Pro motif
mimic substrate with non hydrolysable functionality
hydrolysis of amide bond
split into amine and carboxylic acid and get rid of water
how does saquinavir work
when it is in the active site it won’t get cleaved and prevents the natural substrate binding, need to make the drug more favourable to get into site first
name 5 properties an ideal anti-microbial formulation should be
- effective against targeted infection
- able to reach (specifically) site of action
- rapid onset
- controllable duration
- free of side effects
name 2 things that will influence the route of administration and dosage form for antimicrobials
- site of infection
-severity of infection
topical administration- used for ?
mild infection
IV/IM administration- used for?
severe infections
name one advantage of topical administration onto the skin
local action- drug retained in the skin
to be suitable for topical drug delivery the drug should be (3)
- low MW (less than 500 Da)
- moderately lipophilic (log P between 1 and 4)
- effective at low dose (less than 10mg/day)
name the three formulation types for skin
- liquid
- semi-solid
- solid
name the 2 principles of formulation for the skin
- formulation should be stable but allowing drug to be released after application
- vehicle should allow some solubility of the drug but should not retain the drug by being a very good solvent
name one advantage and 2 disadvantages of a liquid formulation for the skin
ad- rapid short term input of permeant into the skin
dis- low drug delivery
dis- treatment of surface infection only
name 2 advantages and one disadvantage of ointments
ad- increase of transdermal drug flux (the number of molecules moving through a given cross- sectional area during a given period of time)
ad- prolonged drug delivery
dis- messy to use due to greasy nature
name 2 advantages and one disadvantage of creams
ad- easier to apply than ointments
ad- can be washed off skin surface
dis- less occlusive than ointments, therefore less beneficial in dry skin conditions
name an example of a solid formulation for skin application
spray powder