Oncogenes And Tumour Suppressor Genes Flashcards

1
Q

What are the major functional changes in cancer?

A
  • Increased growth
  • Failure to undergo apoptosis or senescence
  • Loss of differentiation
  • Failure to repair DNA damage
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2
Q

How does increased growth happen in cancer?

A

Loss of regulation and stimulation of environment promoting growth

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3
Q

What do oncogenes cause?

A

Oncogenes will normally make cells divide and drive cell division forward, mutations mean that they may be permanently active

  • mutation gains function
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4
Q

What are oncogenes?

A

Altered gene whos product can act in a dominant fashion to help make a cell cancerous

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5
Q

What is the normal version of oncogenes?

A

Protoconcogenes

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6
Q

What do tumour supressor genes cause?

A

Tumour suppressors will do the opposite (and may also be involved in cell cycle arrest?) if you have a mutated oncogene, tumour suppressor genes may still be strong enough to stop proliferation

  • mutation loses function
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7
Q

Explain why tumour suppressor genes need to undergo two mutations as opposed to oncogenes

A

Tumour suppressors become oncogenic when they lose function unlike oncogenes that become oncogenic when they gain function.

  • TS genes need BOTH alleles (one on each chromosome) to be inactivated in order to cause oncogenesis
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8
Q

What is Rous’s protocol for inducing sarcoma in chickens?

A
  • Remove sarcoma and break up into small tissue chunks
  • Grind up with sand
  • Filter and collect filtrate through a fine-pore filter
  • Inject filtrate into young chickens
  • Observe sarcoma in injected chickens
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9
Q

Name the extra gene found in Rous sarcoma virus

A

V-SRC

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10
Q

What is this gene (V-SRC)?

A
  • V-SRC (viral SRC) is a mutated cellular gene, so in uninfected chickens there was found to be a SRC homologue that was not pathogenic.
  • So some genes from cancer causing viruses are mutated forms of cellular genes that have been ‘kidnapped’ by the virus
  • C-SRC is usually involved in the positive regulation of cell growth and division
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11
Q

How can this ‘kidnapping’ happen?

A
  • Retroviruses convert their RNA into DNA by reverse transcriptase and then integrate this into the host genome - in one of the viruses, this integration was accidentally next to C-SRC (cellular SRC) and then there is co-transcription of the viral DNA AND C-SRC - this is then packaged into the capsid and the new RSV produced has C-SRC in it
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12
Q

So explain how RSV infection can lead to oncogenesis

A

V-SRC is expressed at high levels in the host cell leading to uncontrolled host cell growth → cancer

  • I am not sure if there is an actual mutation in V-SRC or if it is the same as C-SRC but just expressed more
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13
Q

Discuss a different mechanism for viral oncogenesis

A

Viral oncogenes also exist (so not genes that have come from a host originally), these can be in DNA or RNA viruses

  • DNA viruses encode various proteins and along with environmental factors can initiate and maintain tumours
  • RNA viruses integrate DNA copies of their genomes into the genome of the host cell and as these contain transforming oncogenes they induce cancerous transformation of the host
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14
Q

What is the capture of c-src by retrovirus?

A

During evolution, the virus can acquire fragments of genes from the host at integration sites and this process results in the creation of oncogenes

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15
Q

What is the c-src oncogene product?

A

60 kDa intracellular tyrosine kinase

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16
Q

What can the C-Src oncogene do?

A

Phosphorylate cellular proteins and affect growth

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17
Q

Name 3 ways that mutations in a proto-oncogene can cause it to become an oncogene

A
  • translocation or transportation to a new promoter
  • gene amplification so multiple copies of the gene
  • point mutation within the gene causing it to become resistant to degradation or hyperactive
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18
Q

What do gene duplications/amplifications do for oncogenes?

A

Increase synthesis of encoded proteins

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19
Q

Name the 4 types of proteins that are normally involved in the transduction of growth signals to a cell so different protein types encoded by proto-oncogenes

A
  • Growth factors
  • Growth factor receptors
  • Intracellular signal transducers
  • Nuclear transcription factors
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20
Q

What is the name of the pathway that RAS and RAF activate?

A
  • ERK MAP kinase pathway
  • Ictivated by growth factor receptors and leads to the induction of additional genes such as fos that encode potentially oncogenic proteins (so for proliferation)
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21
Q

What do the majority of oncogene proteins function as?

A

Elements of the signalling pathways that regulate cell proliferation and surivival in response to growth factor stimulation

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22
Q

Describe the RAS oncogene family - what are RAS proteins, what do they do?

A
  • RAS proteins are small GTPases that are normally bound to GDP in a neutral state
  • Is a signal transducer in proliferation, making it an oncogene

RAS is activated in one third of all cancers - this makes it the most commonly mutated oncogene

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23
Q

What do the majority of oncogene proteins function as?

A

Growth factors, growth backer receptors and intracellular signalling molecules

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24
Q

What were RAS oncogenes identified from?

A

Studies of two cancer causing cell lines

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25
Q

What proportion of oncogenic activation of RAS is seen in human cancer?

A

RAS is activated in one third of all cancers - this makes it the most commonly mutated oncogene

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26
Q

What codons are the mutations in on RAS oncogenes?

A

12, 13 and 61

Glycine → Valine = bladder carcinoma

Glycine → Cysteine = lung cancer

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27
Q

What do the point mutations lead to in RAS oncogenes?

A

Loss of GTPase acting on the RAS protein that is normally used to inactivate the RAS GDP

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28
Q

How do the RAS oncogene intracellular signal transducers work?

A

Binding of extracellular growth factor signal
→ Promotes recruitment of RAS proteins to the receptor complex
→ recruitment promotes RAS to exchange GDP for GTP (activates RAS)
→ activated RAS then initiates the remainder of the signalling cascade (mitogen activated protein kinases)
→ kinases ultimately phosphorylate targets such as transcription factor to promote expression of genes important for growth and survival

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29
Q

Name the 3 members of the MYC oncogene family and the protein they encode

A
  • C-MYC → c-Myc
  • MYCN → N-Myc
  • MYCL → L-Myc
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30
Q

Describe the function of these MYC proteins

A

They are transcription factors that regulate the transcription of at least 15% of the entire genome

  • some of the major effectors include ribosome synthesis, protein translation, metabolism, proliferation … SO they are really important!
  • overexpressed in the majority of tumours
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31
Q

Describe how MYC is activated into an oncogene

A

This is NOT via a mutation, but by chromosomal translocation

  • so it is placed downstream of a foreign transcriptional promoter
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32
Q

Where was the MYC oncogene family originally identified?

A

In avian myelocytomatosis virus

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33
Q

What are MYC oncoproteins?

A

Transcription factors

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34
Q

How much of the genome do the MYC oncogenes transcribe?

A

15%

35
Q

What are the major downstream effectors of MYC?

A

Those involved in:

  • Ribosome biogenesis
  • Protein translocation
  • Cell cycle progression and metabolism
  • Cell proliferation, differentiation, survival and immune surveillance
36
Q

What proportion of human cancers are affected by overexpression of MYC?

A

40%

37
Q

What does MYC encode?

A

Helix-loop-helix leucine zipper transcription factor

38
Q

How does MYC transactivate gene expression?

A

Dimerises with MAX (its partner protein)

39
Q

When is MYC activated (generally)?

A

Comes under the control of foreign transcriptional promotors

40
Q

What does activated MYC lead to?

A

Deregulation of the oncogene that drives proliferation as a result of chromosomal translocation

41
Q

What is burkitts lymphoma?

A

High grade lymphoma

42
Q

Explain how Burkitt’s lymphoma can progress from Epstein Barr virus

A

Activation of MYC by chromosomal translocation is what causes Burkitt’s lymphoma which is the tumour type you get when infected from Epstein Barr virus

43
Q

Who is affected by burkitts lymphoma?

A

Children aged 2-16

44
Q

What are the 3 chromosomal translocations associated with BL?

A

Parts of chromosomes 2, 14 and 22 attach themselves to chromosome 8 → lose control of MYC so uncontrolled proliferation

45
Q

Which type of leukaemia accounts for 15-20% of leukaemia?

A

Chronic myelogenous leukaemia

46
Q

What proportion of chronic myelogenous leukaemia patients carry the philadelphia chromosome?

A

95%

47
Q

what is the Philadelphia chromosome?

A

An abnormality of chromosome 22 in which part of chromosome 9 is transferred to it

48
Q

Which two proteins fuse in this translocation (Philadelphia) and which one is the oncogene?

A
  • BCR (22) fuses with ABL (9)
  • So tyrosine kinase activity of the oncogene ABL is constitutive, leading to abnormal proliferation
49
Q

Name the treatment for CML

A
  • Tyrosine kinase inhibitor
  • This has a 96% remission in early-stage patients!
50
Q

Name some different ways that tumour suppressor genes can control the cell

A
  • regulators of cell cycle checkpoints, like RB1
  • differentiation regulators like APC
  • DNA repair proteins like BRCA1
51
Q

What does loss of tumour supressor gene function require?

A

Inactivation of both alleles of the gene

52
Q

Are tumour supressor genes dominant or recessive?

A

Recessive

53
Q

When do retinoblastomas occur?

A

When immature retinoblasts continue to grow very fast and do not turn into mature retinal cells

54
Q

How can you see retinoblastomas?

A

Tumour will reflect light back in a white colour

55
Q

What is leukocoria?

A

When the tumour reflects light back in a white colour

56
Q

What are the two forms of retinoblastoma?

A
  • Familial
  • Sporadic
57
Q

On what chromosome and what gene does retinoblastoma have a mutation?

A

Chromosome 13 on Retinoblastoma 1 gene

58
Q

Explain the 2 hit hypothesis, using Rb as an example

A
  • There is familial (hereditary) and sporadic retinoblastoma.
  • You need one mutation on each allele for tumour suppressor genes to become non-functional (and therefore cancerous) so we may call them recessive.
  • So if you have the inherited mutation, you are much more likely to develop the disease!
  • this is why sporadic tumour occurs much later on as both alleles need to be mutated
59
Q

Describe the structure of Rb

A

Is made of 3 proteins (p105/110, p107 and p130) which are known as pocket proteins

60
Q

How many binding partners does prb have?

A

Over 100

61
Q

Describe the function of Rb - how it works and what it does

A

Is a transcriptional co-factor that can bind to transcription factors such as E2F by interacting with the large pocket in Rb

Regulates the cell cycle by regulating the transition of G1 to S (major checkpoint)

62
Q

Which is the first cyclin to be synthesised?

A

Cyclin D

63
Q

What does Cyclin D do?

A

Drives progression through G1 with CDK 4/6

64
Q

So what is the function of Rb in this step through G1 - how does it do it?

A
  • Rb protein is a substrate for cyclin D in this step
  • Cyclin D and cyclin E and their CDKs phosphorylate Rb
  • so phosphorylated Rb can NOT bind (is detached) to E2F, meaning that transcription can occur (as Rb is inhibiting E2F) so the cell can now progress to S phase
  • DNA damage would cause de-phosphorylation of Rb so that cell can not progress through G1 checkpoint
65
Q

What does the g1 checkpoint lead to if the DNA is damaged?

A

Arrest of the cell cycle

66
Q

What is a key substrate for cyclin D?

A

Rb protein

67
Q

What is the main binding factor in G1?

A

E2F transcription factor

68
Q

What is Rb activity regulated by in G1?

A

Phosphorylation

69
Q

What happens when the Rb tumour suppressor is active?

A

Inhibits cell proliferation

70
Q

What happens when RB is dephosphorylated in G1?

A

Active and remains bound to E2F

71
Q

What happens when RB is phosphorylated in G1?

A

E2F is released and migrates to the nucleus to induce transcription

72
Q

What can RB be inactivated by in G1?

A

Phosphorylation, mutation or viral oncoprotein binding

73
Q

How can viral oncogenes affect this Rb pathway?

A
  • As well as mutations in Rb, viral oncogenes can also cause inactivation.
  • This would normally be by disrupting E2F binding or destabilisation of Rb
74
Q

Describe how the tumour suppressor p53 is different in function to retinoblastoma

A
  • Rb controls the progression through the G1→S phase checkpoint of the cell cycle
  • p53 on the other hand works to regulate apoptosis in the event of cell damage as well as other pathways
75
Q

Describe the structure of p53 and what it is exactly

A
  • p53 has a central domain that allows it to bind to DNA
  • p53 is a transcription factor that can bind to around 300 different gene promoters
76
Q

what is the prevelance of p53 mutation in cancers?

A

30-50%

77
Q

In a normal cell, what molecule keep p53 levels low?

A

MDM2 protein, is a ubiquitin ligase (also an oncogene)

78
Q

Describe how, with MDM2, p53 levels are regulated in a normal cell

A
  • MDM2 binds to p53 to form a complex in the nucleus where MDM2 modifies the carboxyl terminus of p53 and targets it for proteasomal degradation
  • so p53 has a short half life of 20 minutes
79
Q

What is the MDM2 protein?

A

Ubiquitin ligase (also an oncogene)

80
Q

What activates p53?

A

Stress signals

81
Q

HOW does DNA damage/stress signals activate p53?

A
  • ATM/ATR activated by ROS (reactive oxygen species) which activates CHK1/2 which phosphorylates p53
  • phosphorylated p53 disrupts its interaction with MDM2 so it is not degraded by the proteasome
82
Q

Describe some therapeutic strategies for p53 mutations

A

Targeting p53 to correct any mutations and restoring the wild type function by targeting its regulators

  • 95% of p53 mutations are in the central DNA binding domain

We can use inhibitors to re-fold p53 into wild-type (by PRIMA-1) or regulate p53 to increase its half life in cells, we can do this with MDM2 inhibitors or CRM1 to stop nuclear export of p53

83
Q

Explain why tumour suppressor genes need to undergo two mutations as opposed to oncogenes

A

Tumour suppressors become oncogenic when they lose function unlike oncogenes that become oncogenic when they gain function.

  • TS genes need BOTH alleles (one on each chromosome) to be inactivated in order to cause oncogenesis
84
Q

Describe the function of these MYC proteins

A

They are transcription factors that regulate the transcription of at least 15% of the entire genome

  • some of the major effectors include ribosome synthesis, protein translation, metabolism, proliferation … SO they are really important!
  • overexpressed in the majority of tumours