Organelles Flashcards

(76 cards)

1
Q

What is the Fundamental Difference Between Prokaryotes & Eukaryotes?

A

The nucleus. Karyon = ‘kernel’ or nucleus.

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2
Q

Describe the subcategory of prokaryotes called eubacteria.

A

eubacteria

  • “true
    bacteria”

Eubacteria

  • found in
    environments familiar to us
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3
Q

Describe the subcategory of prokaryotes called Archea bacteria.

A
  • found in hostile environments as well as in more familiar ones
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3
Q

What are the main features of prokaryotes?

A

most diverse group of cells successfully inhabit many different environments exhibit many different growth forms

o spherical, rod-shaped, spiral, chains, clusters, organised
multicellular structures

  • may be
  • organotrophic (use any organic molecule as an energy source)
  • phototrophic (use light as an energy source)
  • lithotrophic (use inorganic molecules as an energy source)
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4
Q

Stuff to know regarding the differences between eubacteria and archaea.

A
  • Division between these two groups is based on molecular biological characterisations.

They are as different to each other as either is from eukaryotes.

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5
Q

A photo showing the main features of prokaryotes (no.1) (on the other side)

A
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5
Q

A photo showing the main features of prokaryotes (no.2) (on the other side)

A
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6
Q

Prokaryotes - Features

A

“simple” cells

  • a few micrometres (um) long

> tough, protective cell wall

  • plasma membrane
  • essentially no membrane-bound organelles
  • have no nucleus
  • circular DNA free in cytosol
  • ribosomes
  • may have a flagellum
  • can reproduce quickly, e.g. some divide every 20 min
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7
Q

Eukaryotes two types

A

> Unicellular

  • most protists
  • yeast
    Multicellular
  • animals, plants (including multicellular algae) & fungi
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8
Q

Ribosomes

A
  • prokaryotes and eukaryotes

> sites of protein synthesis

  • large complexes of
  • proteins &
  • ribosomal RNAs = rRNAs

> eukaryotic larger (80S) than prokaryotic
(70S)

  • two populations in eukaryotes
  • cytosolic
  • free or attached to Endoplasmic
    Reticulum (80S)
  • in mitochondria & chloroplasts (70S) = bacterial size
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9
Q

Membranes - Composition

A
  • Prokaryotes and eukaryotes
  • Bilayer of phospholipids → see L3
  • asymmetrical arrangement in the two halves

> Proteins

  • integral - embedded in the bilayer
  • peripheral - attached loosely to the bilayer
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10
Q

Membranes - Composition photo

A
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11
Q

Plasma Membrane photo

A
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11
Q

Membranes
- Selectivity

A

Selectively permeable

  • Small hydrophobic & small uncharged molecules can cross freely.
  • Larger uncharged polar molecules & charged solutes must interact with transmembrane proteins (transporters) to cross phospholipid bilayer.
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11
Q

Plasma Membrane

A

Plasma membrane involved in

  • cell signalling transport of solutes
  • cell growth & motility
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12
Q

Membranes
- Selectivity photo

A
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12
Q

Plasma Membrane - Carbohydrate groups

A

carbohydrate groups attached to lipids - glycolipids , carbohydrate groups attached to proteins - glycoproteins

› on external (non-cytosolic) side of plasma membrane play roles in:

  • cell-to-cell communication
  • protection from chemical & mechanical damage
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13
Q

Plasma Membrane - Carbohydrate groups photo

A
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13
Q

Membranes
- Create Compartments

A
  • Compartmentalise cells
  • separate cells from their environments
  • separate organelles from each other & from the cytosol
  • Double membranes surround
  • nucleus
  • mitochondria
  • chloroplasts
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14
Q

Endomembrane system includes….

A
  • Includes: nuclear envelope, ER, Golgi apparatus, transport vesicles, plasma membrane, and endosomes and lysosomes (animal cells) or vacuoles (plant cells)
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15
Q

Endomembrane system photo

A
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16
Q

structure of eukaryotes and prokaryotes - outcomes

A

You will be able to

  • memorize that cells are the basic unit of life sharing a basic chemistry,
  • memorize, identify and contrast characteristics of prokaryotic and eukaryotic cells,
  • describe the composition and roles of cellular membranes,
  • explain the roles of cellular organelles and compartments,
  • explain the origin of mitochondria and chloroplasts - endosymbiosis theory
  • describe in detail mitochondrial and chloroplastic structures,
  • describe the generation of cellular energy,
  • explain the role of proton gradients in ATP production,
  • describe the production of carbohydrates in chloroplasts
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16
Q

Endomembrane System:
Golgi Apparatus

A

➢ stacks of flattened sacs (cisternae)

➢ one or more per cell

➢ synthesis and packaging of molecules to be secreted from cell

➢ routing of newly synthesised proteins to their correct cellular
locations

➢ associated with many transport vesicles

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17
Q

Endomembrane System:
Golgi Apparatus photo

A
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18
Endomembrane System: Microbodies photo
19
Golgi Apparatus has a distinct orientation
cis face - adjacent to ER, vesicles arrive from the ER trans face - points toward plasma membrane ➢ transport vesicles pinch off & fuse with cisternae ➢ carry proteins being modified by the addition of sugar groups ➢ correlation of enzyme location (e.g. which cisterna) & what step it catalyses in sugar-modification pathway
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golgi apparatus cis and trans orientation photo
19
Endomembrane System: Microbodies
Peroxisomes ▪ single-membrane bound ▪ contain oxidative enzymes In animals ➢ sites of detoxification (e.g. lots in liver) In plants ➢ sites of detoxification ➢ photorespiration (carbon recycling) ➢ conversion of stored fats into sucrose during germination of some seeds (= glyoxysomes)
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Endomembrane system – Exocytic Pathway photo
19
Endomembrane system – Exocytic Pathway
Membrane growth, secretion ➢ Outward = exocytic pathway ➢ Proteins synthesised on rough ER & glycosylated ➢ Vesicles containing glycoproteins bud off ER & fuse with cis Golgi cisternae ➢ Glycoproteins are further glycosylated as they travel through Golgi cisternae by vesicle budding & fusion ➢ At the trans face of the Golgi, vesicles are directed to plasma membrane or lysosome/vacuole
19
Endomembrane system – Endocytic Pathway photo
19
Endomembrane system – Endocytic Pathway
➢ Inward = endocytic pathway ➢ Ingestion & degradation or recycling) of extracellular molecules ▪ Regions of the plasma membrane containing molecules to be degraded bud inward to form vesicles ▪ Vesicles fuse with early endosomes ▪ Ultimately molecules are degraded in the lysosome /vacuole ▪ Some degradation products can be reused by the cell
19
Endomembrane System: Vacuoles
➢ Vacuoles of plant cells are sites of degradation ➢ They also act as: ▪ storage organs (e.g. seed proteins) ▪ detoxification sites (e.g. tannins) ▪ pigment deposition (e.g. anthocyanins)
19
Eukaryotes Cells - Double Membrane bound Organelles
o nucleus – double membrane o Mitochondria – double membrane o chloroplasts – double membrane
20
Endomembrane System: Vacuoles photo
21
Nucleus photo
22
Nucleus
➢ Surrounded by a double membrane * continuous with ER * interrupted by pores ▪ allow passage of selected molecules between cytosol & nucleus ➢ Contains most cellular DNA * heterochromatin ▪ DNA + proteins - highly condensed, even at interphase * euchromatin ▪ DNA + proteins - not condensed until mitosis ➢ Typically contains a nucleolus * site of ribosomal RNA (rRNA) synthesis & ribosomal subunit assembly
22
Mitochondria
➢ sites of cellular respiration & major energy (ATP) production in a process called oxidative phosphorylation ➢ surrounded by a double membrane ▪ smooth outer membrane ❖ permeable to ions & small molecules ▪ inner membrane ❖ highly folded (into cristae) ❖ impermeable ❖ transport proteins control substrate movement across the inner membrane ❖ contains an electron transport chain & ATP synthase
23
Chloroplasts – Thylakoids and Lumen
Thylakoids ▪ formed by a folded internal membrane system ▪ folded into stacks – grana ➢ light-harvesting pigments ➢ electron transport chain ➢ ATP synthase Lumen ➢ space between thylakoids
23
Mitochondria photo
24
Mitochondrial Matrix
➢ Region not taken up by membranes ➢ Contains: ▪ DNA ➔ mitochondrial genome ❖ codes for o mitochondrial tRNA o mitochondrial rRNA o mitochondrial mRNA * proteins for DNA synthesis & oxidative reactions ▪ Mitochondrial ribosomes (70S) ▪ Enzymes for the tricarboxylic acid (citric acid, Krebs) cycle
25
Chloroplasts – Organelle with a double membrane
➢ sites of photosynthesis ❖ two sets of reactions: ▪ light harvesting ▪ carbohydrate production ➢ surrounded by a double membrane: ❖ outer membrane ▪ permeable to ions & small molecules ❖ inner membrane ▪ impermeable ▪ transport proteins control movement of substrates across internal membrane system
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Chloroplasts photo
27
Chloroplasts – Thylakoids and Lumen photo 1
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Chloroplasts – Thylakoids and Lumen photo 2
29
Chloroplasts - Stroma
➢ region not taken up by thylakoid membranes ➢ contains ❖ DNA codes for ▪ tRNA ▪ rRNA ▪ mRNA ➔ proteins for DNA synthesis & photosynthesis ❖ ribosomes (70S) ❖ enzymes for carbohydrate production
30
Chloroplasts - Stroma photo
31
Mitochondria & Chloroplasts are Products of Endosymbiosis
* An ancestral eukaryotic cell ingested, but did not digest an aerobic bacterium, which over time evolved into a mitochondrion. ➔ eukaryotic cells * Eukaryotic cells later ingested a photosynthetic bacterium without digesting it. Over time, this ingested bacterial cell evolved into a chloroplast ➔ plant cells
32
Mitochondria & Chloroplasts are Products of Endosymbiosis photo
33
Energy Production Overview
➢ Digestive enzymes breakdown: * proteins to amino acids * polysaccharides to simple sugars * fats to fatty acids & glycerol ➢ Breakdown products enter cell cytosol for gradual oxidation & production of some energy (ATP) and reducing molecules (NADH) ➢ The final stages and the majority of energy production takes place in the mitochondria.
34
Energy Production Overview photo
35
Cytosol Energy Production: Early Stages
CYTOSOL: ➢ Glucose & other sugars are converted to pyruvate through glycolysis. ➢ This generates some energy molecules (ATP, NADH) ➢ Some amino acids are converted to pyruvate.
36
Mitochondria Energy Production: Early Stages
➢ Pyruvate, some amino acids and fatty acids enter the mitochondrion. ➢ Pyruvate, fatty acids and some amino acids are oxidised to acetyl CoA in the mitochondrion.
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Mitochondria Production of Reducing Molecules photo
37
Mitochondria Energy Production: Early Stages photo
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Cytosol Energy Production: Early Stages photo
38
Mitochondria Production of Reducing Molecules
➢ Acetyl CoA is further oxidised by the citric acid cycle Produces: - CO2 diffuses out of mitochondria via membranes o NADH & FADH2 (FADH2 not shown) o NADH and FADH2 are molecules with strong reducing power Note: some amino acids can enter the citric acid cycle at intermediate steps & be oxidised directly
39
Electron Transport Chain (ETC) Using reducing power to generate ATP - overview
➢ NADH & FADH2 have strong reducing power = ‘high energy electrons’ ➢ NADH & FADH2 donate electrons to electron transport chain (ETC) in the inner mitochondrial membrane. ➢ The electrons move through the electron transport chain ➔ consist of multiprotein complexes ➢ This results in: ▪ oxidation of NADH & FADH2 ▪ reduction of O2 to H2O ▪ ATP production.
40
Electron Transport Chain (ETC) Using reducing power to generate ATP - overview photo
41
Mitochondria – Finally, ATP production
➢ Pumping of electrons leads to a H+ (proton) gradient ▪ higher concentration of protons in the inter membrane space than in the matrix ➢ ATP is synthesised as protons move through the ATP synthase from the inter membrane space into the matrix. ➢ ATP is transported out of the mitochondrion for use by the cell.
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Mitochondria – Finally, ATP production photo
41
Chloroplasts – Light Harvesting Reaction
➢ Light energy is collected by pigments in the thylakoid membranes ➢ Converted to reducing power (NADPH) and chemical energy (ATP) via a series of oxidation-reduction reactions ➢ H2O being the original electron donor and NADPH the final electron acceptor.
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Chloroplasts – Light Harvesting Reaction photo
43
The Chloroplast - Electron Transport Chain
➢ During electron transport, protons move across the thylakoid membranes from the stroma into the thylakoid lumen, generating a proton gradient. ➢ ATP is synthesised as protons move back across the membrane, from the thylakoid lumen into the stroma, through the chloroplastic ATP synthase.
43
The Chloroplast - Electron Transport Chain photo
44
Carbohydrate Production in the Chloroplast
➢ Calvin cycle uses NADPH & ATP produced during the light reactions for the synthesis of carbohydrates from atmospheric CO2 in the stroma. ➢ The enzyme Rubisco = ribulose 1,5-bisphosphate carboxylase/oxygenase catalyses the first reaction in the Calvin cycle ➢ Rubisco is the most abundant enzyme in the world.
44
Carbohydrate Production in the Chloroplast photo
44
Cytoskeleton - Overview
➢ complex, dynamic network of interlinking protein filaments present in the cytoplasm of all cells, including those of eukaryotes, bacteria and archaea. ➢ Functions: support, shape, motility, intracellular transport, chromosome movement, cell division ➢ dynamic - continuously reorganised ➢ three types of components - each formed from protein subunits ▪ actin filaments – microfilaments ▪ intermediate filaments ▪ microtubules
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Cytoskeleton - Overview photo
46
Cytoskeleton - Actin Filaments
➢ Also known as microfilaments ➢ found in all eukaryotic cells Structure: ▪ composed of linear polymers made up of globular (G-) actin subunits ▪ G-actin monomers combine form a polymer which continues to form the actin filament (7 nm diameter). Two chains intertwine to from an F-actin(Filamentous actin) chain. ▪ cross-linked into bundles & networks ➢ maintenance of eukaryotic cell shape, cell movement, cell division, muscle contraction, intracellular transport and vesicular movement ➢ actin rearrangements within cells is the molecular basis for changes in cell shape & movement
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Cytoskeleton - Actin Filaments photo
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Cytoskeleton - Intermediate Filaments photo
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Cytoskeleton - Intermediate Filaments
Actin 7nm < intermediate 10nm < microtubules 25nm Found in: ➢ Cytoplasm and nuclear lamin of vertebrates, and many invertebrates Structure: ➢ subunits = heterogeneous family of proteins collectively called intermediate proteins ➢ Two proteins twisted together into an alpha helical dimer. Two dimers form a tetramer. Many tetramers form a rope-like intermediate filament. ➢ Example: keratin filaments Functions: ➢ strengthens the cytoskeleton and nuclear envelope ➢ attachment sites for chromatin ➢ anchoring organelles ➢ protein movement
48
Can you …
* … state characteristics of cells and their basic chemistry and life? * … differentiate between archae- and eubacteria, describe features and give examples? * … describe similarities and differences between prokaryotic and eukaryotic cells? * … explain features/structures and roles of ribosomes, membranes and organelles? * … explain a model for the origin of mitochondria and plastids? * … explain key metabolic processes in mitochondria and chloroplasts related to energy production and carbon metabolism? * … describe components of the cytoskeleton and give examples for their roles?
48
Cytoskeleton – Microtubules
Found in all eukaryotic cells Structure ➢subunits = tubulin - dimers of - & *- tubulin ➢dimers stack into filaments, which form walls of stiff hollow tubes (25 nm in diameter) Function ➢ Maintenance of cell structure ➢ intracellular organisation & transport, mitosis, internal structure of cilia & flagella ➢ Main constituents of mitotic spindles Location ➢ extend from an organising structure, e.g. centrosome, spindle pole, basal body
49
Cytoskeleton – Microtubules photo