Prokaryote and extrachromosomal Flashcards

(50 cards)

1
Q

What type of inheritance is shown by extrachromosomal DNA?

A

Non-Mendelian

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2
Q

Where do maternally inherited diseases map to?

A

Mitochondrial genome

These diseases therefore tend to affect energy production, and damage tissues that are dependent on energy e.g. nerves and mucle

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3
Q

How would you describe the mitochondrial and chloroplast genomes?

A

Circular

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4
Q

What is the shorthand for DNA found in mitochondria and cholorplasts?

A
  • Mitochondrial DNA = mtDNA
  • Chloroplast DNA = cpDNA
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5
Q

Which parent provides the mitochondrial/chloroplast DNA?

A

Maternal parent

Vachina

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6
Q

What is heteroplasmy

A

The possession of normal and mutated mtDNA leading to variable symptoms

The ratio of wild type to mutant mtDNA plays a big role in buffering against harmful mutations, evolution, and the inheritance of mitochondrial conditions

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7
Q

How do mitochondria replicate within cells?

A

Randomly - they aren’t like nuclear chromosomes

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8
Q

What does three person IVF prevent?

A

Prevents inheritance of mitochondrial diseases:
- Nucleus is removed from donor egg
- Nucleus is removed from mother’s egg and inserted into the donor egg cell
- Cell is fertilised with father’s sperm
- Healthy zygote produced

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9
Q

What is the endosymbiotic theory?

A

The theory that once, mitochondria and chloroplasts were free-living bacteria that became part of eukaryotic cells

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10
Q

What is the evidence that supports endosymbiotic theory?

A
  • Own circular DNA
  • Replicate independently
  • Use bacterial-like (70s) ribosomes
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11
Q

What is homoplasmy?

A

All mtDNA copies are all the same - e.g. all mutant or all wild type

If they are all mutated, this will likely lead to the death of the organism

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12
Q

What other forms of extrachromosomal inheritance are there?

A
  • Endosymbiotic bacteria e.g. wolbachia
  • Infectious prions (cause misfolding of normal proteins)
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13
Q

How do prokaryotes introduce genetic diversity?

A

Horizontal Gene Transfer (HGT)

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14
Q

What is the name of the chromosomal DNA in prokaryotes?

A

Nucleoid

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15
Q

What is the mechanism by which bacteria divide?

A

Binary Fission

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16
Q

Why do prokaryotes need HGT?

A
  • Binary fission copies all mutations, including the harmful ones (these become permanent in the genome)
  • Without gene exchange, genetic fitness declines over time
  • HGT introduced beneficial mutations over time (e.g. antibacterial resistance), increasing adaptability
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17
Q

What are the three main methods by which prokaryotes perform HGT?

A
  1. Conjugation: direct transfer of plasmids by cell-to-cell contact
  2. Transformation: uptake of free DNA from the environment
  3. Transduction: gene transfer via bacteriophages (viruses)

Increases genetic variation and adaptability in prokaryote populations

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18
Q

What are the 2 types of bacteria populations/multicellular aggregates that form?

A
  • Biofilms
  • Syntrophic consortia
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19
Q

What is the difference between a biofilm and a syntrophic consortia?

A
  • Biofilm: structures microbe communities that adhere to surfaces, surrounded by extracellular polymers
  • Syntrophic consortia: mutually beneficial interactions between different microbial species, wherein metabolites are shared
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20
Q

Comapre the sizes of prokaryote chromosomes and plasmids

A
  • Chromosomes are bigger and denser circular genomes
  • Plasmids are smaller DNA mols that replicate independently - there can be multiple per cell however
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21
Q

What types of genes do plasmids carry?

A

Non-essential, but beneficial genes e.g. antibiotic resistance, virulence, metabolism

22
Q

Explain the process of conjugation

A
  1. Donor cell extends a pilus that attaches to a recipient cell
  2. Rolling circle replication copies one strand of plasmid DNA from the oriT part of the plasmid, which transfers to the recipient
  3. Recipient synthesises a complementary strand, forming a complimentary strand and a complete plasmid
  4. Recipient cell becomes a donor and can now transfer the plasmid to others
23
Q

What is oriT? What does it need to be transcribed?

A
  • oriT = Origin of transfer
  • Needs transfer machinery encoded by the plasmid to be transcribed
24
Q

What do plus and minus mean in the transfer of plasmids?

A
  • Plus = donor cell (has plasmids)
  • Minus = recipient cell (plasmids absent)
25
What promotes conjugation?
The aggregation of cells (either in a biofilm or a syntrophic consortia)
26
What is a transposable element?
A jumping gene - mobile DNA sequences that can make extra copies of themsleves outside of DNa replication | Jump like a spring
27
What are the 2 types of transposable elements?
1. Insertion sequences 2. Transposons
28
What is an insertion sequence?
- Small DNA segments encoding only a transposase enzyme - Flanked by inverted repeats (transposase cuts these and moves the sequence)
29
What is a transposon?
- Larger DNA elements that include functional genes and a **transposase** - Move between chromosomes and plasmids, increasing genetic diversity - Also flanked by inverted repeats that the transposase knows to cut
30
What are the 2 mechanisms of transposition?
1. Non-replicative transposition (cut and paste) 2. Replicative transposition (copy and paste)
31
What is the model used for conjugation?
Its like a USB stick that you can insert into any computer
32
What is the model used to describe transposition?
- Like copying files to different places on the hard drive (and either copying and pasting or cutting and pasting them) - The hard drive can also copy info stored on it onto the USB stick (the plasmid)
33
How can prokaryotes shuffle their genes?
- Transposition - Homologous recombination - HGT (conjugation, transduction, transformation)
34
What is homologous recombination in prokaryotes?
- It occurs when DNA sequences exchange strands, allowing gene shuffling between different DNA molecules - Similar to crossing over in meiosis
35
What is plasmid integration?
Homologous recombination combines the plasmid and chromosome
36
What is plasmid excision?
Homologous recombination reveses the process, freeing the plasmid and chromosome from one another
37
What is the name given to plasmids with reversible integration?
Episomal plasmids
38
How does plasmid integration work?
Homologous sequeences are paired up, crossover reaction occurs, and the plasmid is integrated into the chromosome ## Footnote The reaction is enzymatic and can be reversed, there is an equilibrium between them being separate and joined together
39
How can an entire chormosome transfer into another cell?
If a conjugatve plasmid (with an oriT/tra gene) integrates into the chromosome, the entire chromosome can be transferred to another cell | The recipient cell effectively becomes diploid
40
What is a Hfr strain?
High frequency of recombination A bacterial cell in which the plasmid is integrated into the bacterial chromosome ## Footnote Allows the recipient cell to try out the other's phenotype effectively
41
What is the process of bacteriophage transduction of bacterial DNA?
- Virus attaches to a bacterial cell - Viral nuclease chops up host DNA - Host cell replicates the DNA - New virus accidentally packages bacterial DNA via capsid synthesis - Infected DNA recombines in a new bacterial cell
42
What is bacterial cell competence? What is it mediated by?
- The ability of the cell to absorb DNA from its environment (transformation) - Mediated by specific transport proteins in the membrane
43
What can happen to transformed DNA in a bacterial cell if it is homologous with the cell's DNA?
It can be integrated in the genome if they are homologous by homologous recombination
44
How can you induce artificial competence? Why is this important?
- Can be induced using Ca2+ treatment - This is a key tool in genetic engineering
45
What is a mobilome?
The collection of mobile genetic elements (e.g. plasmids, transposons, phage DNA) that can move within or between genomes | Basically the USB stick
46
What is homologous recombination?
Occurs when transferred DNA is integrated into the recipient genome ## Footnote Has to have a homologous sequence for this to occur
47
Explain what quorum sensing is in bacteria
- Ensures that extracellular DNA is from the same species - Quorum signals are released from one cell to another to let the surrounding bacteria of the same species know that they are competent and ready for gene transfer ## Footnote Works almost like a barcode the competent systems of others in the species recognise
48
What are the 2 examples of extrachromosomal plasmids in eukaryotes?
- Yeast 2-micron plasmid: carries no beneficial genes, just those for its own replication (often used as a vector in genetic engineering) - Double minutes (dmins) in cancer cells: often contain oncogenes that drive cancer progression - infect humans and other animals
49
What is transfection?
Where artificial DNA is inserted into a genome for genetic modification in labs ## Footnote Transfected DNA is often transient and does not integrate into the genome
50
Give an example of transduction in eukaryotes
Retroviruses e.g. HIV