Random questioning Flashcards
Explain the process of DNA replication
- DNA double helix must first be unzipped and the hydrogen bonds between complementary base pairs broken. (DNA helicase)
- The exposed single-stranded DNA acts as a template to which free nucleotides can pair through complementary base pairing.
The enzyme DNA polymerase then joins the nucleotides together through condensation reactions.
This creates phosphodiester bonds between adjacent nucleotides producing a new sugar-phosphate backbone.
The action of DNA polymerase results in the synthesis of two identical molecules of DNA.
Each molecule is composed of one old strand and one new strand, and so the method of DNA replication is semi-conservative.
What can be used as evidence for proving the semi-conservative replication of DNA?
- E. colibacteria were grown on a medium containing only 15N. These bacteria only incorporated 15N into their DNA
- A control colony of bacteria was also grown on a medium containing the lighter 14N. These bacteria only incorporated 14N into their DNA
- Some bacteria were then transferred from the 15N medium to the lighter14N medium
- The bacteria were grown for enough time to undergo one round of replication
- The DNA of all three bacterial colonies was extracted
- The mass of the DNA molecules was compared by centrifuging the extracted DNA in a special solution. The heavier the DNA, the nearer the bottom of the tubeit collected
The results were as follows:
• The light DNA (control colony grown in 14N medium) collected in a band near the top of the centrifuge tube
• The heavy DNA (parent colony grown in 15N medium) collected in a band near the bottom of the centrifuge tube
• The DNA from the transferred bacteria collected in the middle of the centrifuge tube
This provided conclusive evidence that each replicated DNA molecule must contain both heavy and light strands, supporting the semi-conservative replication model.
( Meselson and Stahl )
What is ATP and what is it composed of?
It is a phosphorylated nucleotide composed of organic base adenine, ribose sugar and 3 phosphate groups
What 3 ways can ATP be synthesised?
- during photosynthesis using light energy (photophosphorylation) occurs in chloroplast in plant cells
- by using energy from electron transfers during respiration ( oxidative phosphorylation) occurs in mitochondria in plant and animal cells
- by transferring Pi from donor molecules to ADP during respiration (substrate level phosphorylation) occurs in cell cytoplasm and mitochondria of plant and animal cells
Explain with references to changes in protein shape how reaction with ATP might cause a channel protein to open or close.
ATP is often hydrolysed by channel proteins to form ADP and Pi releasing energy.
ADP and Pi have different charge profiles to ATP’s so the hydrolysis reaction could cause the channel protein to open or close because ADP and Pi could interact with the ionic bonding in the proteins tertiary structure, affecting the 3D shape.
The released energy could also affect the secondary or tertiary bonding in the protein.
Explain how DNA polymerase utilises triphosphate in the replication of DNA
Phosphodiester bonds must be formed between adjacent free acitivated nucleotides in DNA replication.
The activated nucleotides are nucleoside triphosphate.
The formation of the phosphodiester bonds requires energy, which is provided by the hydrolysis of the “unstable” covalent bonds between the phosphate groups of the activated nucleotides.
ATP serves as a great immediate energy source because?
- Energy can be supplied to the cell in optimal amounts
- ATP hydrolysis is a single reaction that occurs easily due to unstable bonds - Energy can be supplied to the cell in optimal amounts
- ATP hydrolysis only releases a small. manageable amount of energy so less is wasted as heat
What can the energy released by ATP hydrolysis be used for?
To drive biological processes :
- metabolic processes (synthesise biological molecules e.g carbohydrates_
- Active transport (ATP is used to change the shape of carrier proteins
- Movement ( ATP is used for muscle contraction)
- Secretion (ATP is needed for the formation of vesicles which will then be released from the cell)
- Molecule activation (ATP is used to phosphorylate other molecules to make them more reactive)
Tears have a high concentration of salt in them,
describe how tears might act as an antibacterial (using knowledge of water potential)
- Tears could have a water potential thats more negative than the bacteria.
- When bacteria comes into contact with tears, water may therefore move out of the bacteria by osmosis.
- This can affect rates of bacterial metabolic reactions hitch can slow or stop growth and/or survival
Why do the eyes require tear fluid, but it isnt present on the skin?
The skin is protected by a layer of dead cells but the outermost layer of cells in the eye is alive.
Cigarette smoke contains chemicals that can paralyse cilia. Explain why smoking leads to increased lung infections.
- Cillia wafts mucus (which traps pathogens) up to the top of the throat so they can be swallowed and sterilised by the stomachs HCL.
- Paralysed cilia cannot move the mucus so it sits in the bronchi/bronchioles for longer giving pathogens a longer window of opportunity to infect the cells of the lung
Explain what is meant by degeneracy in the genetic code and how degeneracy could be advantageous to organisms
(define degeneracy then explain how that helps)
“Degeneracy” means that different codons can code for the same amino acid. This could be protective against mutations as there is a chance a codon could undergo a mutation (base substitution) to become another coding for the same amino acid (silent mutation)
tRNA is a very short RNA molecule made of around how many nucleotides?
80
Despite tRNA being single stranded, how does it still fold into a clover leaf shape?
tRNA can form complementary base pairs with itself, folding into a clover-leaf shape
What section on a tRNA molecule do the amino acids attach to?
One end of the tRNA molecule extends further out, with its bases faced outwards, providing a site for amino acid attachment
How many variety tRNA molecules can bind to the mRNA codons?
61 mRNA codons (not 64 because 3 code for stop)
What happens to a ribosome once an mRNA has successfully translated its polypeptide?
The ribosome units separate form the mRNA strand and are quickly resused for another round of translation
Which enzyme catalyses the linkage of adjacent RNA nucleotides during transcription in eukaryotes?
RNA polymerase
What is an mRNA codon?
Each 3 bases of the mRNA sequence that corresponds to a single amino acid
What is required to form peptide bonds between adjacent amino acids during translation?
ATP is required to form the peptide bond between 2 adjacent amino acids during the process of translation t the ribosomes
mRNA leaves the nucleus by travelling through?
Nuclear pores.
mRNA is much smaller than a chromosome so it can be transported form the nucleus to the cytoplasm through nuclear pores
Which RNA base temporarily forms hydrogen bonds with adenine in a DNA sequence?
Uracil
What does RNA polymerase do?
RNA polymerase catalyses the formation of a strand of mRNA during transcription by joining adjacent RNA nucleotides.
What is the role of tRNA?
Transfer the genetic information from mRNA into a sequence of amino acids