this Flashcards
(32 cards)
transposons
segments of DNA, 700 to 40,000 bp in length,
that transpose (move) themselves from one location in a DNA
molecule to another location in the same or a different molecule.
transposition
The result of the action of a transposon is termed
transposition; in effect it is a kind of frameshift insertion . rare
compelx transpososns
contain one or more genes not connected
with transposition, such as genes for antibiotic resistance
IS
The simplest transposons, called insertion sequences (IS),
consist of no more than two inverted repeats and a gene that
encodes the enzyme transposase (Figure 7.38a). Transposase recognizes
its own inverted repeat in a target site, cuts the DNA at that site, and inserts the transposon (or a copy of it) into the
DNA molecule at that site
hydrolase
catabolize molecules by adding water in a decomposition
process known as hydrolysis. Hydrolases are
used primarily in the depolymerization of macromolecules.
isomerase
rearrange the atoms within a molecule but do
not add or remove anything (so they are neither catabolic
nor anabolic).
ligase / polymearses
join two molecules together (and are
thus anabolic). They often use energy supplied by ATP
lyase
split large molecules (and are thus catabolic) without
using water in the process.
oxidoreductases
remove electrons from (oxidize) or add
electrons to (reduce) various substrates. They are used in
both catabolic and anabolic pathways
transferase
transfer functional groups btwn molecules. can be anabolic
apoenzymes
Many protein enzymes are complete in themselves, but others
are composed of both protein and nonprotein portions.
The proteins in these combinations are called apoenzymes
cofactors
Apoenzymes are inactive if they are not bound
to one or more of the nonprotein substances called cofactors.
Cofactors are either inorganic ions (such as iron, magnesium,
zinc, or copper ions) or certain organic molecules called coenzymes
1ko@en´zıms). All coenzymes are either vitamins or contain
vitamins, which are organic molecules that are required for
metabolism but cannot be synthesized by certain organisms (especially
mammals).
hologneyzme
The binding of an apoenzyme and its cofactor(s) forms an active
enzyme, called a holoenzyme
ribozymes
Not all enzymes are proteinaceous; some are RNA molecules
called ribozymes. In eukaryotes, ribozymes process other
RNA molecules by removing sections of RNA and splicing the remaining
pieces together.
allosteric
(a) Allosteric
(noncompetitive) inhibition results from a change in the shape of the
active site when an inhibitor binds to an allosteric site. (b) Allosteric
activation results when the binding of an activator molecule to an
allosteric site causes a change in the active site that makes it capable
of binding substrate.
competitive inhibitors
Competitive inhibitors are shaped such that they fit into an
enzyme’s active site and thus prevent the normal substrate from
binding
reversible competition can be overcome by
an increase in the
concentration of substrate molecules, increasing the likelihood
that active sites will be filled with substrate instead of inhibitor
feedbak inhibition
The end-product of a metabolic
pathway allosterically inhibits the initial step, shutting down the
pathway
fermentation
Utilizes glycolysis then converts pyruvic acid into another compound (organic waste products)
glycolysis
Occurs in cytoplasm of most cells
Involves splitting of a six-carbon glucose into two three-carbon sugar molecules
Direct transfer of phosphate between two substrates occurs four times – substrate level phosphorylation
Net gain of two ATP molecules, two molecules of NADH, and precursor metabolite pyruvic acid
glycolysis stages
involving 10 total steps
Energy-Investment Stage
Lysis Stage
Energy-Conserving Stage
cellular repsiration
Resultant pyruvic acid completely oxidized to produce ATP by a series of redox reactions
cell resp stages
Synthesis of acetyl-CoA
Krebs cycle
Final series of redox reactions
(electron transport chain)
krebs cycle
Great amount of energy remains in bonds of acetyl-CoA
The Krebs cycle transfers much of this energy to coenzymes NAD+ and FAD
Occurs in cytoplasm of prokaryotes and in matrix of mitochondria in eukaryotes