Toxicology Exam 3 Flashcards

(56 cards)

1
Q

Toxicokinetics:

A

how a toxic substance enters our body, moves through it and is eliminated. It deals with the absorption, distribution, metabolism, and elimination (ADME) of toxic substances

study of the movement of xenobiotics in the body

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2
Q

Toxicodynamics:

A

refers to how our body reacts to that toxic substance on a biochemical and physiological level. Its main focus is how that substance interacts with the body’s molecular and cellular components to produce a toxic response.

study of the interaction of xenobiotics with biological tissue

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3
Q

Oxidative stress:

A

when there is an imbalance between the production of reactive oxygen species (ROS) and the ability of the body to detoxify or repair the resulting damage

Can cause DNA damage then active p450→ apoptosis, chemicals directly poison mitochondria → bad because mitochondria needs to make ATP

Toxic molecules targets DNA of molecular oxygen

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4
Q

Toxic molecules include:

A

Formation of ROS: Superoxide anion, hydrogen peroxide, hydroxyl radicals

Formation of nitrogen molecules: peroxynitrite, nitrogen dioxide

Formation of carbonate anion

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5
Q

Superoxide:

When does it form?

Consequences?

A

Superoxide is a reactive oxygen species (ROS), a free radical formed from molecular oxygen

When does it form? When molecular oxygen acquires an unpaired electron in its outer atomic orbital

Consequences: oxidative stress→damage to mitochondria, proteins, lipids, and DNA

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6
Q

What leads to superoxide formation?

A

Redox cycling (acts as a catalyst to form superoxide)

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7
Q

Redox cycling:

A

where a xenobiotic (foreign substance) undergoing repeated cycles of reduction and oxidation

Types of xenobiotics: Paraquat (lung toxicity), nitrofurantoin (lung toxicity), doxorubicin (liver/heart toxicity)

Xenobiotics transfers an electron from NADPH (when electron is removed, it becomes NADP+) to molecular oxygen (O2) through p450 reductase→makes superoxide

Consequence of redox cycling is degradation

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8
Q

What happens during this continuous cycle (redox) that keeps taking electrons from NADPH?

A

NADPH cellular levels drops

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9
Q

Superoxide radical metabolism happens in two pathways:

A

Pathway 1: nitrogen dioxide toxicity (covalent modification of target)

Pathway 2: hydroxyl radical toxicity (breakdown of lipid membranes)

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10
Q

Superoxide Pathway 1

A

Pathway 1: nitrogen dioxide toxicity (covalent modification of target)

Superoxide radical reacts with nitric oxide (NO) to form peroxynitrite (ONOO-) → reacts with CO2 to form ONOOCO2- → NO2 (nitric dioxide) & CO3-

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11
Q

Superoxide Pathway 2

A

Pathway 2: hydroxyl radical toxicity (breakdown of lipid membranes)

Step 1: superoxide radical undergoes dismutation through superoxide dismutase (SOD) → hydrogen peroxide (H2O2)

Step 2: Fenton reaction: (Fe+2) reacts with hydrogen peroxide→Fe+3, HO (hydroxyl radical) + OH-

Fe+2 is oxidized to Fe+3
Electron in hydroxyl radical comes iron
Hydroxyl radical initiated vicious cycle, which breaks down lipid membranes
- Causes membrane dysfunction/leakines
- Cell death occurs if this reaction is not stopped

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12
Q

What are three pathways to inactivate superoxide?

A

From 1st reaction of pathway 2: superoxide dismutase (SOD) → hydrogen peroxide (H2O2)

  1. Glutathione peroxidase
  2. Peroxiredoxin
  3. Catalase: an enzyme that plays a role in the defense against oxidative stress by facilitating the breakdown of hydrogen peroxide into water and oxygen

superoxide dismutase (SOD) → hydrogen peroxide (H2O2) → CATALASE→ water & oxygen

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13
Q

Four general targets of xenobiotics in dysregulated gene expression

A

Dysregulation of transcription factors (TF) activation (xenobiotics can act as agonist or antagonist)

Dysregulation of TF DNA binding

Alterations of mRNA transcription by RNA polymerase dysfunction

Alternation of protein translation

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14
Q

G protein-coupled receptor (GPCR) - General pathway

A

General pathway → GPCRs are coupled to G proteins (G protein coupled means its signals through proteins with ligand binding to receptor) - G proteins have 3 subunits:
Gα (alpha), β (beta), γ (gamma)

Activation: ligand binding causes exchange of GTP for GDP in the alpha subunit

Inactivation: Innate GTPase activity in the alpha subunit hydrolyzes GTP to GDP

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15
Q

Family of G proteins (Gx): three types of alpha subunits: s, i, q

A

Gs (stimulate adenylate its downstream target)

Gi (inhibits adenylate decrease inside the cell),

Gq (connects to pathway through calcium and phospho c)

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16
Q

G protein-coupled receptor (GPCR) signal transduction: Adenylate Cyclase Pathway:

A

Xenobiotic → GPCR → Adenylate cyclase → cAMP → Protein kinase A → CREB → Cell changes

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17
Q

Adenylate cyclase:

A

An enzyme that catalyzes cAMP production

AMP binds to and activates Protein Kinase A (PKA)

PKA is a protein kinase that phosphorylates many proteins to affect their function

Key target: cAMP Responsive Element Binding (CREB), transcription factor that regulates gene expression

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18
Q

Cholera toxin

A

Cholera toxin (biological made) (CTX, Vibrio Cholerea bacteria): increases adenylate cyclase activity (↑cAMP) through a GPCR coupled to Gsα

Found: GI/diarrhea

Increase in CREB

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19
Q

Pertussis

A

Pertussis toxin (PTX, Bordetella pertussis bacteria): decreases adenylate cyclase activity (↓cAMP) through a GPCR coupled to Giα

Found: respiratory/whooping cough

Decrease in CREB

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20
Q

Cholera/pertussis are

A

Cholera/pertussis are ADP ribosyltransferase enzymes

Catalyzed the covalent modifications of G alpha using NAD+ as a substrate

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21
Q

Know how alterations in cAMP could affect gene expression via CREB transcription factor

A

Relationship between cAMP and CREB: they are both directly proportional, meaning if one increases

Increase cAMP increase CREB

Decrease cAMP decrease CREB

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22
Q

Define homeostasis and Maintenance functions common to all cells

A
  • Self-regulated processes
  • Dynamic equilibrium of biological processes
  • Disruption can result in cellular toxicity (e.g., cytotoxic responses) and disease
  • Levels of homeostasis: Cell-organ-body

Maintenance functions common to all cells:
- Cellular metabolism: chemical reactions necessary to sustain life (e.g., anabolic and catabolic reactions)
- Macromolecule assembly (e.g., cytoskeleton, membranes, vesicles)
- Endocytosis/exocytosis (e.g., nutrients/wastes)
- Cellular ATP production
- Regulation of intracellular ionic environment → Ca

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23
Q

Functions of ATP → ATP is central to many cellular processes

Adenosine triphosphate (ATP)

A

It is one of 4 nucleotide bases used in the biosynthesis of DNA and RNA

It is a precursor to enzyme cofactors such as NAD+, FAD+

It participates in cytoskeleton function (e.g., molecular motors, microtubule assembly, actin polymerization)

Uptake/export of substances (e.g., transporter proteins and endocytosis/exocytosis)

It is involved in signal transduction pathways such as adenylate cyclase, protein kinases, etc.

Ion homeostasis/flux across membranes (e.g., ion pumps and transporters)

It is necessary for the maintenance of cellular Ca2+ homeostasis

24
Q

Five targets of xenobiotics in mitochondria

A

1) Kreb cycle inhibitors (arsenite, ONOO-) or depletion of NAD+/NADH (e.g., redox cyclers)

2) Electron transport inhibitors (rotenone, cyanide, ONOO- phosphine, antimycin-A, menadione)

3) Dissipation (uncoupling) of proton gradient (2,4- dinitrophenol, pentachlorophenol, amiodarone)

4) Inhibition of ATP synthase (DDT, chlordecone, N- ethylmaleimide, p-benzoquinone)

5)Inhibition of substrate delivery (hypoxia: carbon monoxide; lung poisons; hypoglycemia)

Mitochondrial dysfunction results in ATP depletion and disruption of cell function including alterations in Ca2+ homeostasis

25
Calcium (Ca2+) functions:
- Key signal transducing molecule of the cytoplasm - Regulation of enzyme activity (e.g., kinases, hydrolytic enzymes, etc.) - Direct regulation of transcription factor function (e.g., calcium response factor, basic helix-loop-helix transcription factors, etc.) - Regulation of cytoskeleton (e.g., anchoring of actin microfilaments to plasma membrane) Cytoplasmic calcium concentration is maintained at a very low level relative to the extracellular environment → Ca high out and low in
26
Three general mechanisms regulate cytoplasmic Ca2+
1) Transport out of cells across the plasma membrane 2) Sequestration in the endoplasmic reticulum 3) Sequestration in the mitochondrial matrix via a Ca2+ uniporter (selective ion channel) in the matrix membrane
27
Relationship between ATP biosynthesis and Ca2+ homeostasis
Calcium homeostasis requires cellular energy (ATP) input - Flux Ca2+ against its concentration gradient (from lower to higher concentration) Depletion of cellular ATP can result in a bioenergetic catastrophe→rise in cytoplasmic calcium ATP is essential for maintain low intracellular Ca (by moving calcium ions into the ER by calcium pump) →bioenergetic control
28
Three mechanisms to maintain Ca2+ homeostasis
Na+/Ca2+ plasma membrane exchanger Plasma membrane Ca2+ pumps ER membrane Ca2+ pumps
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Disruption of Ca2+ homeostasis by xenobiotics:
Xenobiotics interfere with Ca+2 homeostasis through direct inhibition pumps plasma pore formation release from cellular compartments like ER, mitochondria depleting ATP through damage to mitochondria
30
Where is that increase Ca+2 coming from? indirect and direct
two different mechanisms Direct mechanism: decreased activity of ER/plasma membrane Ca2+ pumps Indirect mechanism: decreased activity of Na+/Ca2+ exchanger due to decreased activity of sodium (Na+)/potassium (K+) ATPase - Xenobiotic inhibition of Na+/K+ ATPase: Na+/K+ ATPase maintains the extracellular-intracellular Na+ gradient (i.e., membrane potential)
31
Overview: ATP and Ca
ATP maintains ionic balance: ensures proper distribution of Na+ & Ca+2 ATPase hydrolysis for energy: ATPase enzymes hydrolyze ATP & NADP+ to release energy, which is used by the Na/Ca pump to push calcium against its concentration gradient Sodium-Calcium Exchanger Importance: maintains homeostasis by utilizing energy from the sodium gradient to pump calcium out of the cell - trying to fix the excess of Ca because we already have a lot of Ca (inside cell) so more calcium→catastrophe - This stabilizes it! ER & Ca+2 Signaling: ER is where proteins are synthesized and P450 enzymes are located, important for calcium signaling & maintaining proper gradient of calcium Mitochondria damage impact: damage to mitochondria, reducing ATP as an energy source, can disrupt the Na/Ca exchanger→ increased intracellular Ca+2 levels - This can activate enzymes inappropriately & interfere with normal cellular functions that rely on calcium signaling Contractions gradient of Ca and sodium gradient know that. Sodium and Ca high outside and low inside.
32
Proton gradient:
A low proton concentration inside the cell, coupled with a high proton concentration outside the cell→creates a high proton gradient This gradient facilitates the flow of calcium INTO the cell, emphasizing the importance of ATP in maintaining proper calcium balance
33
Cellular dysfunction:
cell death → Ultimate consequence of altered ATP/Ca2+ regulation Mitochondrial dysfunction is a common mechanism of toxicity
34
Two major cell death pathways:
Necrosis: “loud” passive process (not programmed) Apoptosis: “quiet” programed process has direct and indirect
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Necrosis: “loud” passive process (not programmed)
Necrosis: role of mitochondria Increase in inner mitochondrial membrane permeability formed by aggregated membrane proteins leads to mitochondrial leakiness to ions, swelling, complete cessation of ATP synthesis and then necrotic cell death
36
Necrosis: characteristic morphological changes
- Cell swelling, membrane blebbing, and cell lysis - Release of cellular constituents into the interstitial fluid - Tissue inflammatory response - Infiltration of inflammatory white blood cells (i.e., neutrophils and macrophages) - Activation of inflammatory cells to release reactive oxygen species and degradative enzymes (e.g., proteases) - Further injury to tissue
37
Apoptosis: “quiet” programed process - Indirect mitochondrial dysfunction
Genomic DNA damage (e.g., double stranded breaks) Induced by ionizing radiation or alkylating xenobiotics → Stabilization of the transcription factor, p53 → P53-induced expression of pro-apoptotic proteins of the Bcl-family of proteins, including Bax → Bax translocation to the mitochondria → Induces release of Cyt c to initiate the caspase cascade Indirect: P53 is a tumor suppressor protein→induces release of Cyt C→caspase cascade→promotes apoptosis→essential for maintaining tissue integrity & to eliminate damaged cells
38
Apoptosis: “quiet” programed process - Direct mitochondrial dysfunction
Loss of mitochondrial cytochrome C ensures block of ATP synthesis Cyt c complexes with Apaf-1 to activate caspase-9 → Caspase-9 is an initiator protease that activates effector caspases (e.g., caspase 3) → Effector caspases activate a specific DNase leading to cleavage of DNA between nucleosomes → Cleavage of structural proteins, such as actin and lamins facilitates cell disassembly Direct: Cytochrome c is released from the mitochondria→ initiates apoptosis→leads to activation of caspases→essential for maintaining tissue integrity & to eliminate damaged cells
39
Apoptosis: characteristic morphological changes
- Condensation of nuclear and cytoplasmic material - Cell shrinkage without lysis of the plasma membrane - Cellular fragmentation into membrane-bound (apoptotic) bodies - Externalization of phosphatidylserine on the cell surface - Removal of apoptotic cell fragments by phagocytosis - Lack of tissue inflammatory response
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Affect qualitative or quantitative changes in gene expression:
Qualitative: gain/loss of function of genes Quantitative: changes in expression level of genes
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Genotype and Phenotype
Genotype: DNA sequence of cells (e.g., genes, alleles) Phenotype: traits coded by genes (e.g., cellular functions, eye color)
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Genetic code:
Protein sequence determines gene function Codon sequence determines protein sequence codon - protein - genetic
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Genotoxic Xenobiotics vs Non-Genotoxic Xenobiotics
Genotoxic Xenobiotics: Change DNA sequence Non-Genotoxic Xenobiotics: do not change DNA sequence
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Genotoxic Xenobiotics: Change DNA sequence Four Types of Genotoxic Mechanisms
Gene Mutation Gene Amplification Chromosomal Aberration Aneuploidy
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Gene Mutation
Mutation: any change in DNA sequence Mutation Classifications: 1)Point mutations A.Missense: amino acid substitution (may change protein function) B.Nonsense: causes protein truncation (shorting) 2) Frameshift mutations A. Insertions B. Deletions
46
General consequences of gene mutations on gene products:
1) Silence gene: no functional product (e.g., loss of function) 2) Modification of the function of the gene product (e.g., gain of function) 3) Alteration in level of expression of the gene product (e.g., alteration in transcription factor binding site in promoter region of gene)
47
Gene Amplification:
duplication of entire gene DNA is responsible for building and maintaining your human structure. Genes are segments of your DNA, which give you physical characteristics that make you unique.
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Chromosomal aberration:
Chromosomal aberration: alterations in chromosome structure/morphology 1) Large fragment deletions in chromosomes 2) Sister chromatid exchange: exchanges of large fragments between sister chromosomes
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Aneuploidy:
Aneuploidy: Deviation from normal number of chromosomes (increase or decrease) Ex: Trisomy syndromes: 21 Down’s syndrome (3 copies of chromosome 21) and Klinefelter’s (XXY) syndrome
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Genotoxic Xenobiotics:
Mutagens: xenobiotics that causes a DNA mutation Clastogen: xenobiotics that cause chromosomal breaks Aneugens: xenobiotics that cause aneuploidy
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Non-Genotoxic mechanisms:
Xenobiotics may alter DNA function without damaging DNA directly via epigenetic mechanisms Epigenetic changes are modifications to the genome that do not alter the sequence of the DNA → “Transmission of alternative states of gene activity” - Affect function of regulatory (promoter) regions of genes - Can alter the responsiveness of the gene promoter to transcription factors - Can turn genes off or on, or modify their expression level
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Two types of chromatin:
Euchromatin: lightly packed regions of DNA that are typically accessible to transcription (areas of gene expression) Heterochromatin: tightly package regions of DNA that are inaccessible to transcription
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Epigenetic mechanisms: DNA methylation
Decreases transcription factor accessibility ↑ (hyper) methylation: favors heterochromatin and gene inactivation ↓ (hypo) methylation: favors euchromatin and gene activation Durable change but may also be reversible Can be inherited from parents
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Epigenetic mechanisms: Histone acetylation
Epigenetic mechanisms: Histone acetylation Increase Acetylation: favors euchromatin and gene activation Decrease Acetylation: favors heterochromatin and gene inactivation
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Consequences of genetic toxicity
Cancer Developmental/Birth defects
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Toxicant Toxin Xenobiotic
Toxicant: poisonous substance of human origin (ex: drugs) Toxin: poisonous substance of biological origin Xenobiotic: any substance, harmful or not (e.g., poison or drug), that is foreign to a given biological system