Unit 02.3: Translation Flashcards

(44 cards)

1
Q

which a^2 are negatively charged?

A

aspartate and glutamate

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2
Q

which structure on aspartate and glutamate causes them to be negatively charged?

A

the carboxylic acid on the R-grp

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3
Q

which a^2 are positively charged?

A

lysine, arginine, histidine

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4
Q

which structure on lysine, arginine and histidine causes them to be positively charged?

A

amino grp on R-grp

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5
Q

which a^2 are polar uncharged

A

serine, threonine, tyrosine, cysteine, asparagine, glutamine

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6
Q

what is the only a^2 that can make covalent bonds?

A

cysteine

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7
Q

who proposed the one gene one polypeptide hypothesis?

A

beadle and tatum

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8
Q

what are synonymous codons?

A

multiple codons that code for the same amino acid

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9
Q

the genetic code is:

A

universal, non-ambiguous, redundant/degenerate, non-overlapping

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10
Q

what are the 2 a^2 that only have one codon coding for them? what are their codons?

A

methionine (AUG) and tryptophan (UGG)

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11
Q

if the mRNA codon is read 5’ - 3’, what direction is the tRNA anticodon read in?

A

3’ - 5’

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12
Q

who figured out that the genetic code is non overlapping?

A

crick and brenner

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13
Q

who deduced the codon sequence for amino acids via their trial and error experiments?

A

nirenberg and matthaei

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14
Q

who discovered the first top codon in 1965?

A

sydney brenner

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15
Q

what is the purpose of transfer RNAs (tRNAs)?

A

to bring a^2 to codons during translation

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16
Q

describe the structure of tRNA

A
  • a cloverleaf shape with 4 double helix stems, 3 of which lead to single stranded loops
  • bottom loop contains anti codon (3’ to 5’), with the “wobble” position on the 3’ end of the anticodon
  • on the top, we have a 5’-CCA-3’ sequence that allows for the binding of the a^2
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17
Q

describe the function of the “wobble” position in tRNA

A

the position on the 5’ end of the tRNA anticodon that allows for the 3’ position on the codon to not be complimentary

basically it doesn’t matter what the third nucleotide is for the most part, the tRNA will let it bind as most codons with same first two letters code for the same a^2

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18
Q

what does it mean when a tRNA is charged?

A

it has an a^2 attached

19
Q

how many aminoacyl-tRNA synthetases are there?

20
Q

describe the process by which tRNAs get charged.

A
  1. carboxyl grp of a^2 reacts with a-phosphate of ATP forming 5’-aminoacyl-AMP, releasing a pyrophosphate.
  2. amino acid is attatched to the adenosine in the 5’-CCA-3’ sequence of tRNA, releasing the AMP
21
Q

what are the 3 common functions of ribosomes?

A
  1. bind mRNA and identify start codon for translation
  2. facilitate complimentary base-pairing between mRNA codons and tRNA anticodons
  3. catalyze peptide bond formation
22
Q

what subunits make up a prokaryotic ribosome?

A

50s large subunit + 30s small subunit = 70s ribosome

23
Q

what subunits make up a eukaryotic ribosome?

A

60s large subunit + 40s small subunit = 80s ribosome

24
Q

describe the A-site of the ribosome. what is its function?

A

the first place the tRNA goes! binds incoming charged tRNA.

25
describe the P-site of the ribosome. what is its function?
the peptidyl site. forms peptide bond between amino acids, disconnecting the a^2 from the tRNA in p-site and transferring it to the tRNA in the A site
26
describe the E-site of the ribosome. what is its function?
the empty site. contains uncharged tRNA to be released from ribosome.
27
what is the decoding center? where is it located?
site ensuring that only the tRNA with the proper anticodon enters A-site. located on the small subunit in A-site
28
what is the peptidyl-transferase center? where is it located?
forms peptide bonds. located in the large subunit
29
describe the initiation of translation in bacteria.
1. small subunit (30s) binds with IF3 and IF1 2. this 30s complex then binds with the Shine Dalgarno sequence which positions IF3 in the E site, AUG in P site and IF1 in A site, forming the 30s initial complex 3. IF2 brings tRNA^fMET into the P-site 4. IF2 dissociates via energy from GTP 5. large subunit (50s) binds, forming the ribosome
30
describe translation elongation in bacteria.
1. charged tRNAs associate with EF-Tu and GTP forming ternary complex 2. ternary complex enters A-site w/ correct tRNA anticodon 3. ribosome changes shape to displace a^2 chain from tRNA in the p-site 4. peptide bond forms between new amino acid and a^2 chain in peptidyl-transferase center 5. EF-G enters A site, displacing peptidyl tRNA 6. EF-G hydrolyzes GTP->GDP causing all tRNAs to shift one over to the left, leaving A-site empty 7. EF-G leaves ribosome allowing for new tRNA to come in
31
describe transcription termination in bacteria.
1. the stop codon enters the A-site 2. release factors mimic the shape of tRNA and enter and bind on A-site recognizing codons. 3. water enters peptidyl transferase center, breaking the last peptide bond, releasing the a^2 chain 4. RF3 promotes the release of RF2 and RF1 5. GTP hydrolyzes to GDP releasing RF3 and dissociating ribosome 6. RRF binds to A site with IF3 to prep for the next round of translation
32
which stop codons does release factor 2 recognize?
UAA or UGA
33
which stop codons does release factor 1 recognize?
UAA or UAG
34
which tRNA recognizes brings in MET when the AUG is the start codon in bacteria?
tRNA^fMET
35
which tRNA recognizes brings in MET when the AUG is NOT the start codon in bacteria?
tRNA^MET
36
describe translation initiation in eukaryotes.
1. small subunit (40s) binds with ElF1, ElF3, ElF5, ElF1A 2. ElF5b and ElF2 bring charged tRNA to p-site 3. ElF4E binds ElF4F complex to 5' end of mRNA while ElF4A unwinds parts in 5'-UTR that pair up w themselves 4. ElF4A uses ATP to get ribosome to look for Kozak sequence 5. when kozak sequence is found, elF4G binds to PABP which binds to poly-A-tails, circularizing the mRNA, making translation faster 6. IFs dissociate and the large (60s) subunit binds
37
describe translation elongation in eukaryotes.
SAME AS PROKARYOTES just instead of EF-Tu we have EF1a and instead of EFG we have EF2
38
describe translation termination in eukaryotes.
1. stop codon enters A - site 2. eRF1 recognizes stop codon and mimics shape of tRNA and binds A - site 3. water enters peptidyl transferase center, breaking the last peptide bond 4. eRF3 stimulates the release of the polypeptide
39
what composes the elF4F complex in eukaryotic translation initiation?
elF4A, elF4E, elF4G
40
which tRNA is used to bring in MET when the AUG is a start codon in eukaryotes?
trna i ^MET
41
which tRNA is used to bring in MET when the AUG is NOT a start codon in eukaryotes?
tRNA^MET
42
do post translational modifications only occur in eukaryotes?
nope! happens in prokaryotes too!
43
how does the Shine-Delgarno sequence in prokaryotes ensure that the authentic stop codon is found?
positions the small subunit of the ribosome in the correct spot to bind with the authentic start codon usually BEFORE start codon
44
how does the Kozak sequence in eukaryotes ensure that the authentic stop codon is found?
authentic start codon WITHIN the Kozak sequence