Unit 5 Flashcards

1
Q

Stages of photosynthesis

A

-Light-dependent reaction (LDR)- thylakoid membrane of chloroplast.
-Light-independent reaction (LIR)- stroma of chloroplast.

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2
Q

Photoionisation of LDR

A

-Chlorophyll absorbs light energy which excites its electrons.
-Electrons are released from chlorophyll so it becomes positively charged.

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3
Q

Chemiosmosis

A

-Electrons move along electron transfer chain, releasing energy.
-Energy is used to actively pump protons from stroma into thylakoid.
-Protons move by facilitated diffusion down electrochemical gradient into stroma via ATP synthase.
-Energy used to join ADP and Pi to form ATP (photophosphorylation).
-NADP accepts a proton and an electron to become NADPH.

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4
Q

Photolysis of water

A

-Water splits to produce protons, electrons and oxygen.
-H2O –> 1/2 O2 + 2e- + 2H+
-Electrons replace those lost from chlorophyll.

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5
Q

Calvin cycle

A

-CO2 reacts with ribulose bisphosphate (RuBP).
-Catalysed by enzyme rubisco.
-Forming 2 glycerate 3-phosphate (GP) molecules.
-GP gets reduced to triose phosphate (TP).
-Using products from light dependent reaction- NADPH and energy from ATP.
-Some TP is converted to useful organic substances (e.g. glucose).
-Some TP is used to regenerate RuBP in the Calvin cycle (using energy from ATP).

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6
Q

How does temperature affect rate of photosynthesis?

A

-As temp increases, rate increases.
-Enzymes gain kinetic energy.
-So more ES complexes form.
-Above the optimum temp, rate decreases.
-Enzymes denature as H bonds in tertiary structure break.
-Fewer ES complexes form.

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7
Q

How does light intensity affect rate of photosynthesis?

A

-As light intensity increase, rate increases.
-LDR increases so more ATP and NADPH produced.
-More GP reduced to TP and more TP regenerates RuBP.
-After a certain light intensity, rate stops increasing.
-Another factor is limiting (e.g. temperature/ CO2 conc).

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8
Q

How does CO2 conc affect rate of photosynthesis?

A

-As CO2 conc increases, rate increases.
-LIR increases as more CO2 combines with RuBP to form GP.
-More GP reduced to TP.
-More TP converted to organic substances and more RuBP regenerated.
-Above a certain CO2 concentration, rate stops increasing.
-Another factor is limiting (e.g. temp/ light intensity).

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9
Q

Why is respiration important?

A

-Respiration produces ATP.
-For active transport, protein synthesis, etc.

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10
Q

Stages of aerobic respiration

A

-Glycolysis (cytoplasm)
-Link reaction (mitochondrial matrix)
-Krebs cycle (mitochondrial matrix)
-Oxidative phosphorylation (inner mitochondrial membrane)

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11
Q

Stages of anaerobic

A

-Glycolysis (cytoplasm)
-NAD regeneration (cytoplasm)

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12
Q

Process of glycolysis

A

-Glucose is phosphorylated to glucose phosphate.
-Using inorganic phosphates for 2ATP.
-Hydrolysed to 2x triose phosphate.
-Oxidised to 2 pyruvate.
-2 NAD reduced
-4 ATP regenerated (net 2)

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13
Q

What happens after glycolysis if conditions are anaerobic?

A

-Pyruvate converted to lactate or ethanol.
-Oxidising reduced NAD- NAD regenerated.
-So glycolysis can continue allowing continued production of ATP.

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14
Q

Why anaerobic respiration produces less ATP?

A

-Only glycolysis is involved which produces little ATP.
-No oxidative phosphorylation which forms majority of ATP.

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15
Q

Process of link reaction

A

-Pyruvate oxidised (and decarboxylated) to acetate.
-CO2 is produced.
-Reduced NAD produced.
-Acetate combines with coenzyme A, forming Acetyl Coenzyme A.

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16
Q

Process of Krebs cycle

A

-Acetyl coenzyme A (2C) reacts with a 4C molecules (oxaloacetate).
-Releasing coenzyme A.
-Producing a 6C molecule (citrate) that enters the Krebs cycle.
-In a series of oxidation-reduction reactions, the 4C molecules is regenerated and:
-2x CO2 lost
-Coenzymes NAD and FAD reduced.
-Substrate level phosphorylation (direct transfer of Pi from intermediate compound to ADP–> produced)

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17
Q

Oxidative phosphorylation

A

-NADH and FADH2 are oxidised to release H atoms meaning it is split into protons and electrons.
-Electrons transferred down the electron transfer chain (chain of carriers at decreasing energy levels).
-By redox reactions.
-Energy released by electrons used in the production of ATP from ADP + Pi (chemiosmotic theory).
-Energy used by electron carriers to actively pump protons from matrix to the intermembrane space.
-Protons diffuse into matrix down an electrochemical gradient via ATP synthase (which is embedded in the membrane).
-Releasing energy to synthesise ATP from ADP + Pi.
-In matric at end of ETC, oxygen is final electron acceptor- electrons can’t pass along otherwise.
-So protons, electrons and oxygen combine to form water.

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18
Q

Examples of other respiratory substrates

A

-Fatty acids from hydrolysis of lipids- converted to Acetyl Coenzyme A.
-Amino acids from hydrolysis of proteins- converted to intermediates in Krebs cycle.

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19
Q

How does energy enter an ecosystem and how is it transferred?

A

-Energy enters by photosynthesis of the producers.
-Photosynthesis makes organic matter which makes up the biomass of an organism.
-It is transferred from prey to predator when the prey is eaten.

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20
Q

Producers

A

Photosynthetic organisms that manufacture organic substances using light energy, water, carbon dioxide and mineral ions.

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21
Q

Consumers

A

Organisms that obtain their energy by feeding on (consuming) other organisms rather than using the energy of sunlight directly.

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22
Q

Saprobionts

A

-Decomposers
-A group of organisms that break down the complex materials in dead organisms into simple ones.
-In doing so, they release valuable minerals and elements into a form that can be absorbed by plants and contribute to recycling.
-Fungi and bacteria.

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23
Q

Food chain

A

Shows a feeding relationship where producers are eaten by primary consumers and they’re eaten by secondary consumers and so on.

24
Q

Food web

A

Most animals do not rely on a single food source and within a single habitat, many food chains will be linked together.

25
Trophic level
-Each stage in the chain is known as a trophic level. -Arrows represent the direction of energy flow.
26
Biomass
The total mass of living material in a specific area at a given time.
27
How is biomass measured?
-Measured using dry mass per given mass. -g/m^2 (grams per square metre). -Chemical energy store can be estimated using calorimetry.
28
Net Primary Productivity (NPP) equation:
-Chemical energy store in plant biomass after respiratory losses to environment taken into account. -Gross Primary Production (GPP) - Respiratory losses (R) -GPP- chemical energy store in plant biomass in a given area or volume in a given time.
29
NPP- importance
-Available for plant growth and reproduction. -Available to other trophic levels in the ecosystem.
30
Primary/secondary productivity and units
-Rate of production. -kJ/ha/year
31
How is energy lost in a food chain?
-Growth -Some of the organism isn't consumed. -Some parts are consumed but can't be digested so lost as faeces. -Excretory materials, eg: urine. -Heat loss from respiration.
32
Most of the Sun's energy isn't converted to organic matter because:
-Over 90% of the Sun's energy is reflected back into space by clouds and dust or absorbed by the atmosphere. -Not all wavelengths of light can be absorbed and used by photosynthesis. -Light may not fall on chlorophyll. -A factor, like low CO2 levels, may limit the rate of photosynthesis.
33
Net production of consumers equation:
N = I - (F+R) N= net production I= chemical energy store in ingested food F= energy lost in faeces and urine R= energy lost in respiration
34
Relative inefficiency between trophic levels explains why:
-Most food chains have 4 or 5 trophic levels because there is inefficient energy stores for further levels. -Total mass of organisms in a particular place (biomass) is less at higher trophic levels. -Total amount of energy available is less at each level as you move up.
35
Percentage efficiency equation:
Energy available after the transfer/ Energy available before the transfer x 100
36
How biomass is formed?
-During phototsynthesis, plants make organic compounds from atmospheric/ aquatic CO2. -Most sugars synthesised are used by plants as respiratory substances. -Rest used to make other groups of biological molecules, form biomass.
37
Dry mass measuring
-Sample dried in an oven. -Sample weighed and reheated at regular intervals until mass remains constant (all water evaporated).
38
Calorimetry
-Known mass of dry biomass is fully combusted. -Heat energy released heats a known volume of water. -Increase in temp of water is used to calc chemical energy.
39
Calorimetry features
-Stirrer- evenly distribute heat energy. -Air/insulation- reduces heat loss and gain to and from surroundings. -Water- has high specific heat capacity.
40
Crop farming- increase efficiency
-Simplifying food webs to reduce energy losses to non-human food chains. -Herbicides- kill weeds- less comp so more energy to create biomass. -Pesticides- kill insects- reduce loss of biomass from crops. -Fungicides- reduce fungal infections- more energy to create biomass. -Fertilisers prevent poor growth.
41
Lifestock farming- increase efficiency
-Reducing respiratory losses within a human food chain- more energy to create biomass. -Restrict movement+ keep warm- less energy lost as heat from respiration. -Treated with antibiotics- prevent loss of energy due to pathogens. -Selective breeding to produce breeds with higher growth rates.
42
Nutrient cycle simple
-Nutrients are taken up by producers as simple, inorganic molecules. -The producer incorporates the nutrient into complex organic molecules. -When the producer is eaten, the nutrients are passed into the consumers. -It is then passed along the food chain. -When the producers and consumers die, complex molecules are broken down by saprobioants that release nutrients in the simplest original form.
43
Nitrogen cycle and stages
-Plants and animals require nitrogen in order to produce proteins and nucleic acids(RNA and DNA). -78% of the atmosphere is nitrogen -Bacteria convert atmospheric N2 into nitrogen containing compounds so it can be used in processes. -Four stages are: nitrogen fixation, ammonification, nitrification and denitrification.
44
Nitrogen fixation
-Atmospheric nitrogen is converted into nitrogen-containing compounds. -Carried out by nitrogen fixing bacteria (which are found in the root nodules of leguminous plants and free in the soil). -Converts nitrogen into ammonia, which forms ammonium ions in solutions so it can be used by plants. -Bacteria have a symbiotic relationship with the plant (rely on one another).
45
Ammonification
-Nitrogen compounds in waste products and dead organisms are decomposed into ammonia. -This forms ammonium ions in the soil. -By saprobionts which secrete enzymes for extracellular digestion.
46
Nitrification
-Uses nitrifying bacteria to convert ammonium ions into nitrogen containing compounds. Oxidation reaction. -Turns them into nitrites (NO2-) then nitrates (NO3-). -Oxidation reaction. -Requires oxygen.
47
Denitrification
-Uses denitrifying bacteria. -Bacteria use nitrates in respiration so it produces nitrogen gas. -Anaerobic conditions.
48
Role of saprobionts in recycling elements
-Decompose organic compound. -By secreting enzymes for extracellular digestion. -Absorb soluble needed nutrients and release minerals ions.
49
Mycorrhizae
Symbiotic association between fungi and plant roots
50
Role of mycorrhizae
-Fungi act as an extension of plant roots to increase SA of root system. -Increase rate of uptake of water and inorganic ions. -In return, fungi receive organic compounds.
51
Ploughing- increasing fertility
-More ammounium converted into nitrite and nitrate- more nitrification/nitrifying bacteria. -Less nitrate converted to nitrogen gas- less denitrification/denitrifying bacteria.
52
Phosphorus cycle
-Phosphate ions in rocks released by erosion/weathering. -Phosphate ions taken up by producers/plants/algae and incorporated into their biomass, -Rate of absorption increased by mycorrhizae. -Phosphate ions transferred through food chains. -Some phosphate ions lost from animals in waste products. -Saprobionts decompose organic compounds releasing phosphate ions.
53
Why fertilisers?
-To replace nitrates/phosphates lost when plants harvested and lifestock removed. -So improve efficiency of energy transfer- increase productivity/yield.
54
Artificial vs natural fertilisers
-Natural- organic- ions released during decomposition by saprobionts. -Artificial- contains inorganic compounds of nitrogen, phosphorus and potassium.
55
Use of fertilisers- environmental issue
-Phosphates/nitrates dissolve in water leading to leaching of nutrients into lakes/rivers/oceans. -Leads to eutrophication.
56
Eutrophication
-Rapid growth of algae in pond, so light blocked. -Submerged plants die as they cannot photosynthesise. -Saprobionts decompose dead plant matter using oxygen in aerobic respiration. -Less oxygen for fish to respire leading to their death.
57
Advantage of using natural over artificial fertiliser.
-Less water soluble, less leaching, eutrophication less likely. -Organic molecules require breaking down by saprobionts- slow release of nitrates etc.