wk 2 pretest Flashcards

(107 cards)

1
Q

consists of the biochemical reactions bacteria
use to break down organic compounds
(catabolism) and the reactions they use to
synthesize new molecules (anabolism) from
smaller subunits.

A

Microbial metabolism

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2
Q

Energy for anabolism is
- generated during t

A

he catabolism of a
substrate.

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3
Q

The occurrence of all biochemical reactions in
the cell depends on t

A

he presence and activity
of enzymes.

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4
Q

metabolism can be
regulated in the cell by r

A

regulation of the
production of an enzyme itself induced or
suppressed by molecules present in the cell)
or by regulation of the activity of the enzyme
(via feedback inhibition).

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5
Q

determines the end
product and the resulting pH of the medium

A

the biological patheay for catabolism

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6
Q

Microbiologists use these metabolic
differences as

A

phenotypic markers in the
identification of bacteria.

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7
Q

Diagnostic schemes analyze each unknown
microorganism for

A

(1) utilization of various substrates as
a carbon source,
(2) production of specific end products
from various substrates, and
(3) production of an acid or alkaline in
the test medium

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8
Q

Bacteria use biochemical pathways to

A

catabolize carbohydrates and produce energy

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9
Q

what is fermentation and whatcarriesit out

A

an anaerobic process carried
out by obligate, facultative, and aerotolerant
anaerobes

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10
Q

mechanism used to produce energy

A

fermentation and aerobic res[piration

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11
Q

Allows growth in the absence of atmospheric
oxygen

A

FERMENTATION

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12
Q

it generate nicotinamide adenine dinucleotide
(NAD)rmentation generates

A

emp glycolytic pathway

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13
Q

molecule necessary for maintaining
the Krebs cycle

A

nad

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14
Q

use of endproducts of fermentation

A

identification of anaerobic anaesthesia

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15
Q

End-product determination is also
used in what test

A

voges-Proskauer (VP) and methyl
red tests, two important tests used in the
identification of members of the order
Enterobacterales.

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16
Q

less efficient in energy
generation than respiration because the
beginning substrate is not completely
reduced; therefore all of the energy in the
substrate is not released.

A

fermentation

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17
Q

efficient energy-generating process in
which molecular oxygen (O,) is the final
electron acceptor.

A

Aerobic respiration (oxidation)

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18
Q

anaerobic respiration in which molecules
other than ????????? , act as the final electron
acceptors.

A

anaerobic respiration in which molecules
other than molecular oxygen, such as nitrate
and sulfate, act as the final electron
acceptors.

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19
Q

which is more energy yielding anaerobic or aerobic respiration

A

anaerobi8c respiration is less

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20
Q

The starting carbohydrate for bacterial
fermentation or oxidation is

A

.glucose

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21
Q

The three major biochemical pathways
bacteria use to break down glucose to pyruvic
acid are

A
  1. Embden-Meyerhof-Parnas(EMP)
    glycolytic pathway
  2. pathway phosphate pentose
    PATHWAY
  3. Entner-Doudoroff pathway
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22
Q

EMP glycolytic pathway

A

. Major pathway in conversion of glucose to pyruvate
. Generates reducing power in the form of NADH,
. Generates energy in the form of ATP
· Anaerobic; does not require oxygen
. Used by many bacteria, including all members of the order
Enterobacterales

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23
Q

pentose phosphate (phospogluconate) pathway

A

. Alternative to EMP pathway for carbohydrate metabolism
· Conversion of glucose to ribulose-5-phosphate, which is rear-
ranged into other 3-, 4-, 5-, 6-, and 7-carbon sugars
. Provides pentoses for nucleotide synthesis
· Produces glyceraldehyde-3-phosphate, which can be converted
to pyruvate

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24
Q

entner duodoroff pathway

A

. Converts glucose-6-phosphate (rather than glucose) to pyruvate
and glyceraldehyde phosphate, which can be funneled into
other pathways
. Generates one NADPH per molecule of glucose, but uses one
ATP

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25
a key metabolic intermediate.
pyruvic acid
26
Alcoholic fermentation end product
ethanol.
27
Homolactic fermentation
lactic acid.
28
Heterolactic fermentation end product
which, in addition to lactic acid, the end products include carbon dioxide, alcohols, formic acid, and acetic acid.
29
Propionic acid fermentation end product
Propionic acid
30
mixed acid fermentation end product
lactic, acetic, succinic, and formic.
31
used by yeasts when they ferment glucos
alcoholic fermentation
32
Members of the genus Streptococcus and many members of the genus Lactobacillus ferment pyruvate using this pathway
homoalactic fermentation is
33
Some lactobacilli use a mixed fermentation pathway
heterolactic fermentation
34
fermentation carried out by Cutibacterium acnes (formerly Propionibacteri um acnes) and some anaerobic non-spore-form ing, gram-positive bacilli.
Propionic acid fermentation
35
Members of the genera Escherichia,Sa lmonella, and Shigella within 2 the order Enterobacteral es use this pathway for carbohydrate fermentation and produce a numbe of acids
mixed acid fermentation
36
The strong acid produced is the basis for the positive reaction on the methyl red test exhibited by these organisms and the acidic pH on laboratory media
mixed acid fermentation
37
Members of the genera Klebsiella, Enterobacter, and Serratia within the order Enterobacteral es use this pathway for carbohydrate fermentation.
butanediol fermentation
38
butanediol fermentation
acetoin (acetyl methyl carbinol)and 2,3-butanediol.
39
Butyric acid fermentation :
butyric acid, acetic acid, carbon dioxide,hy drogen.
40
Fermentation used hy certain obligate anaerobes, including many Clostridium, Fusobacterium and Eubacterium
butyric acid fermentation
41
The most important pathway for the complete oxidation of a substrate is the
kreb cycle oxidation or tricarboxylic acid cycle.
42
kreb cycle result
cycle results in the production of acid and evolution of carbon dioxide during aerobic respiration
43
is an important step in classifying members of the order Enterobacterales.
The microorganism's ability to ferment lactose
44
These bacteria are classified as either lactose fermenters or nonlactose fermenters.
Enterobacterales
45
Enterobacterales ARE CLASSIFIED AS
These bacteria are classified as either lactose fermenters or nonlactose fermenters.
46
disaccharide consisting of one molecule of glucose and one molecule of galactose linked by a galactoside bond
LACTOSE
47
● Steps in utilizing lactose
1. Enzyme b-galactosidase permease transport of lactose from cell wall to cytoplasm 2. Happens inside the cell. B-galactosidase to break galactoside bond, releasing glucose which can then be fermented
48
DNA was first discovered by
Frederick Miescher in 1869.
49
discovered that DNA contained phosphates, five-carbon sugars (cyclic pentose), and nitrogen-containing bases.
Phoebus A. T. Levine, 1920`
50
discovered the helical structure by x-ray crystallograph
ROSALIND FRANKLIN
51
described the three-dimensional structure of the DNA molecule in 1950s
James Watson and Francis Crick,
52
DNA is a double-helical chain of deoxynucleotides. Its helix is a double strand twisted together also called
spiral staircase
53
A nucleotide is a complex combination of the following
○ A phosphate group (PO4) ○ cyclic five-carbon pentose sugar, the handrails and sides ○ Anitrogen-containing base, or the "steps," either a purine or pyrimidine
54
● A ____ consists of a fused ring of nine carbon atoms and nitrogen
PURINE● A purine consists of a fused ring of nine carbon atoms and nitrogen
55
2 PURINE IN DNA
● A purine consists of a fused ring of nine carbon atoms and nitrogen ● 2 purines in DNA: Adenine and Guanine
56
Single ring of six atoms of carbon and nitrogen
PYRIMIDINE
57
● 2 pyrimidines in DNA:
Cytosine and Thymine
58
A ___ is formed when the 5’carbon of the sugar and one of the nitrogenous bases attaches to 1’ carbon of pentose sugar
A nucleotide is formed when the 5’carbon of the sugar and one of the nitrogenous bases attaches to 1’ carbon of pentose sugar
59
used as a template to produce the complementary messenger RNA (mRNA) strand.
dna
60
is a means of amplifying specific DNA sequences and detecting very small numbers of bacteria present in specimen
PCR technique
61
circumvent the need to culture bacteria, providing a more rapid method of identifying pathogens
genetic test
62
An understanding of microbial genetics is also necessary to
understand the development and transfer of anti-microbial resistance by bacteria and mutations in viruses
63
Genes that are always expressed are .
constitutive
64
expressed only under certain condition
silent genes,
65
Genes that are expressed only under certain conditions are
inducible
66
The aim of a cell is to
produce proteins that are needed for cellular structure and function and to transmit that information for accomplishing this to the next generation of cells
67
is the duplication of chromosomal DNA for insertion into a daughter cell.
Replication
68
is the synthesis of a specific protein from the mRNA code
translation
69
The bacterial chromosome, also called the ________, consist of a single, closed, circular piece of _______ that is super coiled to fit inside the cell.
dsDNA
70
contains all of the information needed for cell growth and replication.
dsdna
71
n front of each gene on the DNA strand is an untranscribed area containing a ______ which the RNA polymerase recognizes and binds to for transcription initiation
promoter region
72
area may also contain regulatory regions to which molecules may attach and cause either a decrease or an increase in transcription.
promoter region
73
The number of plasmids present in a bacterial cell may range from
one (low copy number) to hundreds (high copy number).
74
plasmids also may sometimes be passed from one bacterial cell to another through
conjugation
75
Some fragments of DNA are mobile and can jump from one place in the chromosome to another place
mobile genetic elements
76
The simplest mobile piece of DNA is an
insertion sequence (IS) element
77
approximately 1000 base pairs long with inverted repeats on each end.
insertion sequence (IS) element.
78
The main effect of IS elements in bacteria
when an IS element inserts itself into the middle of a gene, it disrupts and inactivates the gene. This action can result in loss of an observable characteristic, such as the ability to ferment a particular sugar.
79
are related mobile elements that contain additional genes.
transposons
80
often carry drug-resistance genes and are usually located in plasmids
Transposons
81
may be the result of a change in one nucleotide base (a point mutation) that leads to a change in a single amino acid within a protein (missense mutation) or may be the result of insertions or deletions in the genome that lead to disruption of the gene or a frameshift mutation, or both.
mutation
82
change in one nucleotide base (a
point mutation)
83
change in a single amino acid within a protein
(missense ● mutation
84
he result of insertions or deletions in the genome that lead to disruption of the gene or a ______- or both.
frameshift mutation,
85
Some codons do not code for an amino acid; they terminate translation and are called .
stop codons
86
If a point mutation produces a stop codon,
this is referred to as a nonsense mutation.
87
method by which genes are transferred or exchanged between homologous (similar) regions on two DNA molecules, forming new combinations of genes on a chromosome.
genetic recombination
88
This provides a way for organisms to obtain new combinations of biochemical pathways and adapt to changes in their environment
mutations
89
uptake and incorporation of free or naked DNA into a bacterial cell
transformation
90
Cells that can take up naked DNA are referred to as being .
competent
91
not an efficient process and has been reported to occur naturally in only a few bacterial species,such as S. pneumoniae, N. gonorrhoeae, Helicobacter pylori, and H. influenza
transformation
92
main method used to introduce genetically manipulated plasmids into bacteria, such as E. coli, during cloning procedures.
transformation
93
transfer of bacterial genes by a bacteriophage from one cell to another
transduction
94
A _____consists of genetic material (DNA or RNA) surrounded by a protein coa
A bacteriophage consists of genetic material (DNA or RNA) surrounded by a protein coa
95
the phage DNA instead becomes incorporated into the bacterial genome, where it is replicated along with the bacterial chromosomal DNA when the cell divides. This state is known as ___________, while the phage is called ___________
the phage DNA instead becomes incorporated into the bacterial genome, where it is replicated along with the bacterial chromosomal DNA when the cell divides. This state is known as lysogeny, while the phage is called temperate
96
s are often used to insert cloned genes into bacteria for analysis.
phages
97
● transfer of genetic material from a donor
conjugation
98
bacterial strain to a recipient strain. Close contact is required between the two cell
conjugatiopn
99
hollow tube that connects to the recipient cell
sex pillus
100
When the F factor is integrated into the bacterial chromosome, it increases the likelihood of transferring nearby chromosomal genes, creating
high-frequency recombination (Hfr) strains.
101
The first three letters in the restriction endonuclease name indicate
the bacterial source of the enzyme
102
These enzymes are used in the field of biotechnology to create sites for insertion of new genes.
Restriction enzyme
103
104
105
Pathway used by many bacteria inckuding all members of the order enterobacterales
Emp
106
Pathway used by hterolacric bacteria which lack someenzume required for emp and its example
Pentose phosphate. Brucella abortus and lactobacillus
107
Process used by bacteria lacking certain gycolytic enzyme and its example
Entner duodoroff pathway. Pseudmonas, alcaligenes, enterococcus fecalis