Bio 2 - DNA Replication, Mutation And Repair Flashcards

1
Q

Which protein unwinds the DNA in DNA replication?

A

Helicase.

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2
Q

What protein stabilizes the single-stranded DNA once it has been unwind?

A

Single-strand binding protein.

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3
Q

What does Topoisomerase do?

A

When the DNA is being unwind, the downstream part that has not been unwind yet gets supercoiled. This protein relieves the supercoil so it does not tangle up the DNA downstream.

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4
Q

Which class of antibiotics inhibits prokaryotic topoisomerase?

A

Fluoroquinolones.

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5
Q

Which class of drugs target eukaryote topoisomerase?

A

Etoposide. It is an anti-neoplastic drug.

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6
Q

Which auto antibody targets Topoisomerase and for which disease?

A

It is Anti-Scl-70, associated with Diffuse scleroderma (not CREST scleroderma).

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7
Q

What is an RNA primer?

A

A strand of RNA needed to initiate the actual replication after the strand has been unwind. In prokaryotes, RNA primer has to be made by Primase.

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8
Q

What does DNA polymerase III do?

A

It replicates the DNA in the Leading and Lagging strand in prokaryotes.

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9
Q

How is replication taking place in the Leading strand?

A

From 5’ to 3’ in a continuous manner.

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10
Q

How is DNA replicated in the Lagging strand?

A

Goes from 5’ to 3’ in fragments (Okazaki fragments); Primase keeps making more RNA primer for every fragment.

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11
Q

What does DNA polymerase I do?

A

It removes the RNA primer laid down in the fragment to replace it with real DNA.

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12
Q

Which protein ties the Okazaki fragments together once the RNA primer has been removed?

A

DNA ligase.

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13
Q

Who makes the Primer in Eukaryotes?

A

DNA polymerase alpha.

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14
Q

Who builds the Okazaki fragments on the lagging strand in Eukaryotes?

A

DNA polymerase alpha.

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15
Q

Which protein builds the DNA in the Leading strand in Eukaryotes?

A

DNA polymerase delta.

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16
Q

What does DNA polymerase beta do?

A

Repairs DNA.

17
Q

What does DNA polymerase gamma do?

A

Replicates mitochondrial DNA.

18
Q

What is a Silent mutation?

A

The genetic code changes but the final polypeptide is unchanged. Often the third base that gets changed.

19
Q

What is a Missense mutation?

A

Mutation does change the AA sequence, so that the polypeptide product has different structural or functional properties.

20
Q

What is Nonsense mutation?

A

Base substitution results in a stop codon.

21
Q

What is a frameshift mutation?

A

Nucleotides are added or deleted and the reading frame is shifted. Therefore downstream AA sequence is completely different.

22
Q

What is a pyrimidine dimer?

A

2 pyrimidines, usually thimer, on the same strand of DNA get covalently bonded together. Done by UV light.

23
Q

What are the four types of DNA repair?

A

Mismatch repair, Nucleotide excision, Base excision repair, Non-homologous end joining.

24
Q

How does mismatch repair work?

A

DNA has been replicated incorrectly (T being paired with G instead of A). Enzyme remove a large portion of the daughter base and replace it with the correct sequence.

25
Q

What is nucleotide excision repair?

A

Take out the damaged nucleotide (Done by Endonucleases) and put a new one in (DNA polymerase and DNA ligase). Done in bulky damages.

26
Q

What is Base excision repair?

A

Removes the damaged base (glycosolases), endonuclease cuts DNA and removes sugar, polymerase fills gaps, and ligase seals it. Done on non-bulky DNA damage (oxidized, alkalated, etc).

27
Q

What is non-homologous end joining?

A

Repairing both strands, it is used when there is a clean break between two strand of DNA, and it glues them back together.

28
Q

What is the cause of Hereditary nonpolyposis colorectal cancer?

A

Due to mutation of gene of mismatch repair proteins.

29
Q

What is the cause of Xeroderma pigmentosum?

A

Mutation in the proteins in charged of Nucleotide excision repair.

30
Q

What is the cause of Bloom Syndrome?

A

Mutation of helicase, affecting DNA replication and DNA Repair. Patients have hypersensitivity to sunlight.

31
Q

What is the cause of Ataxia telangiectasia?

A

Mutation in dsDNA repair defects.

32
Q

What is the cause of BRCA1 and BRCA2 mutations?

A

dsDNA repair defects.

33
Q

What strand of DNA nucleotide opposes this DNA strand: 5’-ATTGCGTA-3’?

A

5’-TACGCAAT-3’. Always written in 5’ to 3’.

34
Q

How does UV light damage DNA?

A

It cause Pyrimidine dimers.

35
Q

Where exactly does DNA replication start?

A

At sites called origins of replication, where DNA starts to unwind, making a Y-shaped area called the replication fork.

36
Q

What treatment is recommended for Xeroderma Pigmentosum?

A

Avoid sunlight.