B1 Flashcards

(82 cards)

1
Q

the carbon atom’s features that allow organic molecules to be formed

A

carbon atoms readily form bonds with other carbon atoms to make a carbon backbone along which other atoms can attach
in living organisms, there are relatively few other atoms that can attach to carbon
life is therefore based on a small number of chemical elements

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

monosaccharide

A

basic carbohydrate monomer
sweet tasting
soluble
(CH2O)n - n=3-7
can form crystals
affect water potential
e.g. glucose, fructose, galactose

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

glucose

A

hexose sugar
C6H12O6
two isomers: a and B gluclose
- they differ in the position of -OH attached to C1
in B glucose, the H is below the plane and the -OH is above the plane on C1

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

disaccharides

A

two monosaccharides join in s condensation reaction
forms a glycosidic bond
addition of water breaks glycosidic bond- hydrolysis

glucose+glucose = maltose a1-4
glucose+fructose = sucrose
glucose+galactose = lactose B1-4

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

polysaccharides

A

polymers, made by combining many monosaccharide molecules, joined by glycosidic bonds in condensation

large molecules
insoluble in water
not sweet
does not affect water potential
Cx(H2O)y

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

polysaccharides differ in:

A

constituent monomers
type of bond
where the glycosidic bond is (polysaccharides)
structure (helical/branched)
function
where they are found

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

uses of a + B glucose

A

a-glucose: respiratory processes + energy storage
B-glucose: strength, rigidity, support

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

test for starch

A

place sample in test tube
add drops of iodine in potassium iodide solution
positive result = yellow –> blue/black

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

condensation

A

joins monomers together
forms a chemical bond
releases water

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

hydrolysis

A

breaks a chemical bond between monomers
uses water

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

starch- about + structure

A

polysaccharide found in plants in small grains
esp in seed and storage organs
major energy source in most diets

  • made up of chains of a-glucose, linked by a 1-4 glycosidic bonds, in condensation reactions
  • branched chains- amylopectin
  • unbranched chains- amylose
    amylose = wound in tight coil- compact helical structure
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

starch structure to function

A
  • insoluble- doesnt affect water potential
  • large- does not diffuse out of cells
  • amylose = compact- lots stored in small space
  • hydrolysed to a-glucose- used in respiration
  • branched amylopectin- many ends increase surface are - which can be acted on by enzymes- releasing a-glucose - monomers readily for respiration
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

glycogen about + structure

A

found in animals and bacteria, never plant
similar structure to amylopectin, but shorter chains, more highly branched
‘animal starch’- major carbs storage molecule in animals

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

glycogen structure to function

A
  • insoluble- does not affect water potential
  • large- does not diffuse out of cells
  • compact- lots stored in small space
  • more highly branched than starch- more ends can be acted on simultaneously by enzymes- rapidly hydrolysed to glucose monomers- used in respiration
    this is important to animals which have a higher metabolic rate and therefore respiratory rate than plants because they are more active
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

suggest how glycogen acts as a source of energy

A

hydrolysed to glucose monomers
used in respiration

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

cellulose - structure + function

A

made of B-glucose monomers

  • long, straight unbranched chains
  • chains run parallel to each other
  • hydrogen bonds form cross linkages between adjacent chains
  • number of hydrogen bonds adds much strength
  • unlike starch, adjacent glucose molecules are rotated 180 degrees
    this allows hydrogen bonds to form between -OH groups on adjacent parallel chains

cellulose molecules grouped together –> microfibrils –> fibres

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

how does cellulose support plant cells

A

provides rigidity to plant cell wall that prevents cell bursting when water enters by osmosis
- exerts inwards pressure that stops further influx of water
- living plant cells are turgid and semi-rigid
important in maintaining stems and leaves in a turgid state so they can provide maximum surface area for photosynthesis

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

explain how the structure of starch and cellulose are different

A

starch made of a-glucose
cellulose made of B-glucose

position of -OH on C1 = inverted in cellulose

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

characteristics of lipids

A

contain C, H, O
proportion of O to C and H is smaller than in carbohydrates- long fatty acid hydrocarbon chain
insoluble in water
soluble in organic solvents e.g. alcohols and acetone

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

roles of lipids

A
  • cell surface membrane and membrane surrounding organelles
    phospholipids contribute to the flexibility of membranes and the transfer of lipid soluble substances across them

-source of energy: when oxidised, provide more than twice the energy as same mass of carbs + release water

-waterproofing: insoluble in water- plants and insects have thick waxy cuticles to conserve water, mammals produce oily secretion from sebaceous glands

-insulation: slow conductors of heat- retain body heat. also electrical insulators in myelin sheath around nerve cells

-protection: stored around delicate organs

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

hydrogenated fatty acids

A

formed when acids with C=C are bombarded with H so they become saturated

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

triglyceride structure

A

have three fatty acids combined with glycerol
each fatty acid forms an ester bond with glycerol in a condensation reaction (-OH + -COOH)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

simple triglyceride

A

fatty acids all the same

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

mixed triglyceride

A

different fatty acids

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
saturated/monounsaturated/polyunsaturated fatty acid
no C=C/ 1 C=C/ many C=C
26
structure of fatty acids related to properties
2 saturated, 1 unsaturated kinky cannot stack ontop of each other liquid @ room temp e.g. oils 3 saturated can stack ontop of each other solid @ room temp e.g. fat
27
triglyceride structure related to properties
- high ratio of C-H to C (fatty acid) so excellent energy soure - low mass to energy ratio- good storage molecule, much energy stored in a small volume- reduces mass animals need to carry around - large, non-polar so insoluble in water- does not affect water potential - release H2O when oxidised
28
phospholipid structure
differ from triglyceride- one fatty acid molecule replaced by phosophate molecule hydrophilic head, hydrophobic tail
29
structure of phospholipids related to function
- polar molecules- in aqueous environment, form hydrophobic bilayer within cell-surface membranes - hydrophobic heads hold surface of cell-surface membrane - can form glycolipids within cell surface membranes- cell recognition
30
test for lipids
add ethanpl to sample shake to dissole add water shake gently milky white emulsion = positive milky colour = due to any lipid being finely dispersed in water to form emulsion light is refracted as it passes oil-water so appears cloudy
31
benedicts test reducing + non reducing
reducing - grind with pestle + mortar - add water - filter out solid - add benedicts - gently heat with water bath - blue to brick red non reducing - if reducing = negative - new sample, add HCl - boil - add alkali to neutralise - add benedicts - heat gently - blue to brick red
32
non subjective approach to benedicts
filter out precipitate and dry weigh ppt the higher the mass, the more sugar present
33
describe how an ester bond is formed in a phosphodiester molecule
condensation reaction loss of water between glycerol and fatty acid
34
explain how cellulose molecules are adapted to their function
long straight chains linked by many hydrogen bonds to form fibrils grouped to fibres provide strength to cell walls
35
explain how starch molecules are adapted for their function
insoluble- doesnt affect water potential helical- compact large molecule- cannot leave cell
36
why do polar molecules dissolve in water?
polar molecules form hydrogen bonds with water molecules
37
what is a macromolecule and how is it formed
large molecule consisting of thousands of carbon atoms joined together (polymers = molecules) formed by condensation reactions
38
why does sucrose produce a positive benedicts test after acid hydrolysis
acid hydrolysis of sucrose molecules releases the monomers a-glucose and b-fructose the monomers are reducing sugars give a positive result when heated with benedicts reagent
39
plant cell walls structire to function
contain cellulose exerts inward pressure on cell contents prevents further influx of water therefore cells do not burst when HYDROSTATIC PRESSURE increases
40
why are starch and glycogen good for storage
both virtually insoluble they DO NOT ADD TO THE SOLUTE CONC in cells so water potential is not affected
41
what is an emulsion
particles of a substance that are not dissolved but dispersed in a volume of water
42
what are amino acids/ polypeptides/ proteins
amino acids are the monomer which combine through condensation and formation of peptide bonds to form the polymer polypeptide polypeptides can combine to form proteins proteins have a FUNCTION
43
structure of amino acids
central (alpha) carbon atom attached to: - amino group (-NH2) - carboxyl group (-COOH) - -H atom - R group
44
formation of peptide bond
-OH of carboxyl combines with -H of amino group of another amino acid
45
why are amino acids zwitterions?
can internally transfer ions H from COOH --> NH2 net charge of 0
46
primary protein structure
the amino acid sequence in its polypeptide chain this sequence determines its shape, properties, function
47
secondary protein structure
the shape which the polypeptide chain forms as a result of hydrogen bonding the linked aa possess -NH and -C=O on either side of peptide bond H of -NH has 8+, O of C=O has 8- (due to high electronegativity of O and N) these groups form hydrogen bonds shape : a-helix or B pleated sheet
48
tertiary protein structure
due to the bending and twisting of the polypeptide helix into a compact structure disulfide, ionic, hydrogen bonds present, as well as hydrophobic interactions it is the 3D shape of a protein that is important in terms of its function it makes each protein distinctive and allows it to recogise/ be recognised by other molecules
49
quaternary protein structure
combination of many different polypeptide chains and associated non protein prosthetic groups into a large, complex protein molecule (conjugated)
50
test for proteins
biruret test- detects peptide bonds - place sample in test tube - add equal volume NaOH - add few drops CuSO4 and mix blue to purple is positive
51
fiborous proteins structure + functions
unbranched tightly wound tertiary structure twisted in second helix to make quaternary water insoluble physically tough parallel polypeptide chains in long fibres functions structural role + contractile
52
globular protein structure + functions
roughy spherical water soluble tertiary structure critical for function polypeptide chains folded into a spherical shape functions metabolic catalytic regulatory transport protective
53
what are enzymes
enzymes are globular proteins that act as catalysts they alter the rate of a chemical reaction without undergoing a permanent change themelves
54
what conditions must be satisfied for a reaction to take place
- the reactants must collide with sufficient energy to alter the arrangement of their atoms - the free energy of the products must be less than that of the substrates - activation energy must be reached
55
how do enzymes lower the activation energy
breaking bonds bringing molecules together
56
enzyme structure
globular proteins specific 3D structure as a result of primary protein structure functional region called active site - the specific region of the enzyme where the substrate binds and catalysis takes place
57
substrate
the molecule on which the enzyme acts active site + enzyme are complementary shape forms enzyme-substrate complex substrate is held in active site by bonds that temporarily form between certain a.a in the active site and the groups on the substrate molecule
58
how is substrate held in active site
R-groups of amino acids face inside the active site - made up of +ve and -ve charges - bonds temporarily form between a.a. and substrate - helps substrate settle in active site
59
what is enzyme specificity
enzyme only catalyses reaction with substrates with complementary shapes
60
induced fit model
proximity of substrate enzyme changes shape substrate in active site enzyme puts strain on substrate distorts bonds in substrate lowers activation energy needed to break bonds
61
lock and key model
an enzyme only fits the shape of 1 specific substrate - the enzyme is highly specific and rigid
62
limitation of lock and key
enzymes are not rigid structures - other molecules can bind to the enzyme, NOT on the active site (e.g. non competitive inhibitors) and alter the active site shape - enzymes are therefore flexible structures so: if an inhibitor binds to enzyme (not act. site), the active site shape distorts and the substrate cannot fit - therefore, the active site changes depending on bonding molecules to the enzyme
63
measuring enzyme catalysed reactions
use its time course: rate = amount/time amount = mass or volume disappearance of substrate or formation of product
64
the rate of an enzyme catalysed reaction (stages)
- lots of substrate, 0 product -easy for substrate to meet empty active sites -all active sites are filled at one time -amount of substrate decreases as its broken down -amount of product increases -becomes more difficult for substrate to come into contact with enzyme- fewer substrate molecules as broken down, and product molecules get in the way. -substrate molecules take longer to be broken down and rate of reaction slows -rate continues to slow as substrate concentration decreases -until substrate concentration is so low so that any more change its concentration cannot be measured. -until no substrate left so rate stops
65
how to measure the rate of an enzymes catalysed reaction
tangent to curve
66
effect of temperature on enzyme action
- increasing temperature increases kinetic energy of molecules they move around more rapidly and collide more often more enzyme substrate complexes formed so rate increases - increasing temperature further begins to cause hydrogen bonds to break- change in tertiary structure active site changes shape- substrate fits less easily - increasing temperature further (around 60 degrees) the enzyme is so disrupted that it completely denatures and stops working. denaturation is a permanent change- enzyme is no longer functional
67
why is our body temperature not higher for increased enzyme action
although higher body temperature would increase the metabolic rate slightly advantages offset by additional energy that would be needed to maintain the higher temperatures other proteins, apart from enzymes, may be denatured at higher temperatures at higher temperatures, any further rise in temperatures e.g. during illness, may denature the enzymes
68
why do different species have different body temperatures
some animals e.g. birds have a normal body temperature of around 40 degrees because they have a high metabolic rate for the high energy requirement of flight
69
when describing a rate / temp graph
1. where it starts 2. where it peaks- optimum temp 3. where it goes down 4. where it ends
70
effect of pH on enzyme action
pH is a measure of H= conc each enzyme has optimum pH at a different pH than the optimum, the H bonds in the active site are broken- enzyme denatires change in pH also alters the charges on amino acids in the active site- so it is no longer complementary can also break ionic+hydrogen bonds in the tertiary structure so the active site changes shape
71
temp + pH- pattern of marks
1. identify bonds 2. state effect on tertiary structure of active site 3. decrease in the number of enzyme substrate complexes forming loss of complimentary shapes 4. denaturation reduction of rate of reaction
72
effect of enzyme concentration on rate
as long as excess substrate, increase in enzyme conc leads to proportionate increase in rate of reaction graph initially shows proportionate increase - because there is more substrate than the enzyme's active sites can cope with - increasing enzyme concentration, some excess substrate can be acted upon so rate increases if substrate is limiting (i.e. not sufficient substrate to supply all active sites) any increase in enzyme conc will have no effect on rate rate will stabilize at constant level because available substrate is already being used as rapidly as it can be by existing enzyme molecules
73
effect of substrate concentration on rate
if enzyme conc = fixed and substrate conc increased, rate increases in proportion - at low substrate conc, enzyme molecules have limited number of substrate molecules to collide with so active sites are not working at full capacity - as more substrate added, active sites gradually become filled, until max rate Vmax when substrate is in excess, rate levels off
74
inhibitor
a substance which reduces the activity of an enzyme, catalyst or reactant
75
enzyme inhibitor
substances that directly or indirectly interfere with the functioning of the active site of an enzyme and so reduce its activity
76
types of enzyme inhibitors
competitive- bind to active site non competitive- bind to enzyme at a position other than the active site
77
competitive inhibitor properties
- similar molecular shape to substrate allows them to occupy active site it is the difference between the concentrations of the inhibitor and substrate that determines the effect on enzyme activity if the substrate conc is increased, effect of inhibitor is reduced the inhibitor is NOT PERMANENTLY BOUND to the active site so when it leaves another molecule can take its place sooner or later, all substrate molecules will occupy an active site, but the greater the concentration of inhibitor, the longer this will take
78
non competitive inhibitor
attach to enzyme at binding site which isnt active site upon attachment, alters shape of enzyme and thus its active site so that it is no longer complementary to substrate a PERMANENT change to shape of enzyme as the substrate and inhibitor are not competing, increase in substrate concentration does not decrease effect of inhibitor eventually no enzyme substrate complexes formed
79
what is a metabolic pathway
a series of reactions in which each step is catalysed by an enzyme each reaction is connected by their intermediates i.e. the product of one is the reactant of the next
80
how are metabolic pathways structured
the enzymes that control a pathway are often attached to the membrane of a cell organelle in a precise sequence. - in a metabolic pathway, the product of one reaction acts as a substrate for the next - by having the enzymes in an appropriate sequence, there is a greater change of each enzyme coming into contact with its substrate than if the enzymes were free in the organelle this is a more efficient means of producing the end product to keep a steady concentration of a particular chemical in a cell, the same chemical often acts as an inhibitor of an enzyme at the start of a reaction,
81
end product inhibition
end product inhibits 1st enzyme if the concentration of end product increases above normal, there will be greater inhibition of 1st enzyme as a result, less product will be produced and its concentration will return to normal if the concentration of the end product falls below normal, there will be less to inhibit 1st enzyme so more product produced end product inhibition is normally non competitive
82
suggest one advantage of end product inhibition being non competitive relate your answer to how the two types of inhibition take place
- the level of end product does not fluctuate with substrate non- competitive inhibitors occur at a site on the enzyme other than the active site- hence isnt affected by substrate concentration therefore in non-competitive inhibition, changes in the level of substrate do not affect the level of inhibitor, nor the level of end product competitive inhibition involves competition for active sites a change in the level of substrate would therefore affect how many end products molecules combine with active sites therefore the degree of inhibition would fluctuate and so would the level of end product.