biological molecules Flashcards

(112 cards)

1
Q

what is protoplasm?

how much % of H2O?

what are biochemicals

A

living material in cell
nucleus+cytoplasma (all)

70% to 90% as well as water

compounds produced by living organisms

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2
Q

which elements makeup biochemicals

A

carbon
hydrogen
oxygen
nitrogen
phosphorus
sulphure

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3
Q

carbon
molecular form of utilization?
function
% by weight in human beings

A

CO2
basic element of organic compounds
photosynthesis
18.5%

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4
Q

oxygen
molecular form of utilization?
function
% by weight in human beings

A

O2
used in aerobic respiration
6.5%

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4
Q

hydrogen
molecular form of utilization?
function
% by weight in human beings

A

H20
during photosynthesis
used as a reducing agent
9.5%

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5
Q

nitrogen
molecular form of utilization?
function
% by weight in human beings

A

NO3-1, NH4+1
used in amino acid for protein synthesis, nucleic acid, hormones, co-enzymes
3.3%

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6
Q

phosphorus
molecular form of utilization?
function
% by weight in human beings

A

H2PO4-, HPO4-2
components of nucleic acid, ATP, phospholipids, co-enzymes NAD, NADP ect
1.0%

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7
Q

sulphure
molecular form of utilization?
function
% by weight in human beings

A

SO4-2
components of proteins and co-enymes
0.3%

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8
Q

chemical composition of cells
Bacterial cell and Mammalian cell
water
protein
carbohydrate
lipids
DNA
RNA
OTHER organic
inorganic ions

A

70 70
15 18
3 4
2 3
1 0.25
6 1.1
2 2
1 1

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9
Q

what is a dipole

A

separation of electrical charge
polar molecule
so it forms hydrogen bonds

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10
Q

what are the biologically important properties of water?

5 points

A

1)behaves as the best solvent
2)slow to absord and releas heat
3)high heat of vapourization
4)an amphoteric molecule
5)co-hesive force in water molecule

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11
Q

how does water behave as the best solvent?
why is it important?

A

due to polar nature many polar substance suc as ionic ones can dissociate into ions and dissolve
water can also act as a solvent for non-polar solvents
all chemical reactions take place withn the aq. part of the cell so vitally imp. for the process of life
ions and molecuels dissolve and collide for reactins to happen

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12
Q

what is the specific heat capacity of water important?

A

the specific heat capacity o an substance is the measure of the amount of energy needed to raise the temp. by 1* of 1gm
the SCH of water is high

thermal stability imp. in water based protoplasm so it’s carried out at an constant rate

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13
Q

heat of vapourization og water and how does it play it’s part?

A

due to hydrogen bonding which hold the water molecule together
liquid water requires higher amount of heat energy to convert into vapours
stability
unlikey to cell-freeze as needs to lose a lot of energy

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14
Q

amphoteric nature of water

A

perfect medium for biochemical rxn
acts as a buffer pH remians constant
acts as both acid and base

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15
Q

co-hesive force in water molecules

A

force of attraction bw similar molecules is called co-hesive force
due to polar nature attract each other and form chains- the chain does not break apart which helps it to move freely, they remian together due to HB
water molecules also adhere to the surface
can fill a vessel and still flow so so solute gets evenly distributed
water a good transport and matrix medium

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16
Q

name major categories of Macromolecules/biological molecules

and what are their monomers

A

proteins- amino acid
polysaccharides- monosaccharides
lipids- fatty acid and gylcerol of fats
nucleic acids- nucleotides

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17
Q

what is condensation

AKA?

A

removal of hydroxly group (-OH)
and hydrogen (-H)

dehydration synthesis bc water is removed

takes place by proper enzyme and energy expense

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18
Q

process of condensation in autotrophic organisms

A

the cell produces monomers from simple inorganic molecules like CO2, H2O, nitrites, sulphates etc
these monomers later on assemble to form macromolecules in source or sink cells

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18
Q

what is hydrolysis

exo or endo?

A

addition of water
water molecule breaks into ions H+ and OH- with the help of an enzyme

when bond is broken, energy is released

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19
Q

what does protein mean?

A

proteios
first rank

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20
Q

what is a protein?

A

proteins can be defined as the polymers of amino acids, where specific amino acids link to gather in a definite manner to perform a particular function
most important organic compound
>50% of dry weight of cell

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21
Q

who came up with the name protein?
who named it vital?

A

Berzelius in 1838
1883 Dutch Chemist G.J.Murlder

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22
Q

parts

what all elements do proteins contain?

aka

sources

A

C, H, O, N
can also contain P and S

called nitrogenous compounds due to N

egg milk fish pulses hair skin nails feathers

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23
how are amino acids linked? how are they function unique? | how many types of amino acid? ## Footnote what groups are present in the amino acids?
peptide linkage each protein has a unique sequence of amino acid **many of the chemical properties of protein is based upon the chemical properties of of it's constituent, amino acids** | 20 ## Footnote a basic group (-NH2), an acidic carboxylic group (-COOH) to the same alpha atom R radical group
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Glycine
R is Hydrogen
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Serine
R is CH2OH methanal
26
Alanine
R is CH3 methyne
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polypeptide
>100 amino acids protein may differ in number of peptide chain per protein molecules
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primary structure of protein
a polypeptide chain having a linear sequence of amino acids due to peptide bonds | insulin
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quaternary structure | two types
association of two or more sub-units (polypeptide chains) into large-sized molecules | Haemoglobin ## Footnote homogenous structure if similar units heterogeneous
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tertiary structure
arrangement of 2nd structure into 3D (fold or superfold) having peptide, hydrogen, ionic, and disulphide bond | Lysozyme
30
secondary structure of protein
when a polypeptide chain becomes *spirally coiled* results in the formation of a rigid and tubular structure called Helix Hydrogen and Sulphide bonds to hold in spiral manner | hairs, spider's web
31
what causes denaturing of proteins
high temp or chemical teatments loses it's conformation and ability to function if it remains dissolved it may renature
32
functions of proteins
1)structural cables 2)provide mechanical support in n out cell 3)enzymes 4)hormoes 5)growth factors 6)gene activators 7)anitbodies 8)antigens 9)fibrine | 10,000 diff types of proteins
33
carbohydrates ratio used as % dry weight all sweet? types 3
2:1 as water building material and storage 1% all are sweet except polysaccharide mono oligo poly
34
monosaccharides formula what type of solid what taste in water??? which food r they found | aka
aka simple sugars CnH2nOn white crystalline solid sweet taste soluble fruits and veggies
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name 3,4,5,6,and 7 monosccharides
triose tetrose pentose hexose heptose
36
triose
C3H6O3 glycerose phosph glyceraldhyde dihydroxyacetone
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pentose
C5H10O5 Ribose Ribulose
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tetrose
C4H804 Erythrose Erythrulose
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hexose
C6H1206 glucose fructose galactose
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heptose
C7H14O7 glucoheptose
40
fructose
**most abundant hexose found in nature** aka fruit sugar
40
glucose where is it found
found in ripe fruits sweet corn honey also found n starch
41
Is galactose found in milk? Where do you find galactose?
Milk sugar is composed of glucose and galactose. Where do you find galactose? Lactose, found in dairy products has been considered the primary source of galactose in the diet. found in combined stae lactose (milk) disaccharide
42
what are oligosaccharides? dextrin?
yeilds 2 - 10 monosaccharides ''' 3-10 monosaccharids
43
sucrose made? | where is it found? aka
glucose + fructose | aka cane sugar found in most plants n in beet root
44
starch found food? amylose? amylopectin? in water?
most imp. reserve food material in higher plants found in legumes, potatoes, cereals made up of many glucose molecules joined in straight chains and branched chain amylopectin insoluble in water **starch is converted into simple sugars by hydrolysis and then oxidised to produce energy to be used in metabolism of other biomolecules**y... the chemical reactions in the body's cells that change food into energy...metabolism | in plants excess glucose is converted into starch
44
lactose made? | where is it found?
glucose + galactose | found only in milk
45
h20 + maltose made? | found?
glucose + glucose | does not ouccue in nature ifrom malt spourting barley
46
46
name 3 polysaccharides
glycogen starch cellulose
47
cellulose produced?? polymer??
glucose polymer produced by plants glucose joined in straight chains no branching (unbranched polysaccharide) main constituent of plant cell-wall most abundant **carbohydrate** in nature shape- parallel cellulose molecules are held together bybhydrogen bonds about 80 cellulose molecules chains associate to form a microfibril, the main architectural unit of the plant cell-wall
48
glycogen found in? water? what form? aka? reserve or structural? structure is similar to?
a reserve polysaccharide found in bacteria, fungi, liver and muscle tissues aka animal starch insoluanle in water stored in granular form structure is similar to starch | excess glucose is converted into glycogen
49
# what is the functions of carbohydrates
thye are potential source of energy this energy is utilized in metabolism they also act as storage food molecules they also work as an excellent building, protective and supporting structures. In animal chitin forms the exoskeleton of arthropods. They also form complex conjugated molecules.
50
What are the important groups of lipids,
Acylglycerol (fats and oil) Waxes Phospholipids Terpenoids
51
What are Acyiglycerol (Fats and Oil)? How many types What is it made up of How much K Cal energy Fat?
These are found both in animals and plants, provide energy for different metabolic activities and are very rich in chemical energy. When compared an equal amount of acylglycerol contains over twice the energy content than carbohydrate. It is estimated that a person of average size contains approximately 16 Kg of fat which is equivalent to 144000 K Cal of energy which takes a very long time to deplete. Acyiglycerol consists of a glycerol molecule linked to three fatty acids. This condensed molecule is also called a Triacylglycerol (Triglyceride). There are two types of acylglycerol:
52
What are lipids Who named What elements
Bloor 1943 Naturally occurring compounds which are insoluble in water But soluble in organic solvent C H O like carbohydrates but lesser ration of oxygen as compared
53
What are two types of acylglycerol:
Saturated acylglycerol (Fats): do not contain any double bonds Unsaturated acylglycerol (Oils):
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What are Unsaturated acylglycerol (Oils)?
Unsaturated acylglycerol (Oils): They contain unsaturated fatty acids i.e. They contain one or more than one double bond between carbon atom (-C=C-). They are liquid at ordinary temperature. They are found in plant also called oil. e.g Linolin (C57 H104 O6) found in cotton seed contains linoleic acid.
55
What are Saturated acylglycerol (Fats)?
Saturated acylglycerol (Fats): They contain saturated fatty acidsi.e. they do not contain any double bond between carbon atom. They are solid at ordinary temperature, mostly found in animals, e,g Stearin (C57, H110 O6) found in beef and mutton.
56
What are waxes? Where r they found ? What is their structure?
Waxes are simple lipids having one molecule of fatty acid forming ester bond with one molecule of long chain alcohol e.g Bee's Wax. Txb Waxes are found as protective coating on stems, stalks, leaves, petals, fruit skins, animal skins, fur and feathers etc. Waxes are water repellant and non-reactive.
57
Why are waxes commercial importance?
Wax esters are of considerable commercial importance because they act as superior machine lubricants. For many years, sperm whales were the principle source of these wax but now a unique plant that grows primarily in desertareas, Simmondsia chinesis or Jojoba, may serve as superior substitute because it synthesize large amounts of oxygen wax esters as storage lipids in its seed.
58
What are Phospholipids? Where r they present ? Structure?
Phospholipids: Phospholipid is the most important class of lipids from biological point of view. A phospholipid is similar to Triacylglycerol of an oil, except that one fatty acid is replaced by phosphate group. The phospholipid molécule consists of two ends, which are called hydrophillic (water loving) end (head) and hydrophobic (water fearing) end (tail). Phospholipids are present in all living cells frequently associated with membranes and are related to vital functions such as regulation of cell permeability and transport processes. Properties of cell membrane depend on it phospholipid component. polar head glycerol backbone fatty acid tails
59
What are Terpenoid? types of terpenoids?
Terpenoid is a large and important class of lipids, built up of isoprenoid (C5H8) units. Steroids, Carotenoids and Terpens are the important classes of it. They help in oxidation reduction processes as terpens, some are components of essential oils of plants e.g Menthal, camphor, mint etc. They are also found in cell-membrane as Cholesterol. Plant pigments like Carotene, Xanthophylls are also the form of terpenoides.
60
What are Terpenes?
Terpenes: The group of lipids based only on isoprenoid unit (Cg Ha). Small size terpenes are volatile in nature; produce special fragrence. Some of these are used in perfumes e.g. Myrcene from oil of bay, Geranoil from rose, Limonene from lemon oil and Menthol from peppermint oil. Derivates of some terpenes are found in Vitamin A, and A2. They are also important constituents of chlorophyll molecules as well as Intermediate compound for cholesterol blosynthests. In nature they are utilized in the synthesis of rubber and latex.
61
What r Steroids?
Steroids: Steroids consist of three 6-membered carbon rings (A, B, C) and one 5-membered carbon ring (D). These rings are fused together with total 17 carbon atoms called steroid nucleus. One of the most important steriod is Cholesterol; a component of animal cell membrane and a precursor for the synthesis of a number of steriods, sex hormones such as testosterone, progesterone and estrogenes.
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What are Carotenoids? What pigment do they produce? Structure?
Carotenoids consist of fatty acid like carborr chain, which are conjugated by double bonds carrying 6-membered carbon ring at each end. These compounds are pigment producing red, orange, yellow, cream and brown colours in plants. Some important carotenoids are caroten, xanthophyll etc. Another group of pigmented compounds are Tetrapyrrol which are present as an important part of familiar chlorophyll and cytochromes pigments.
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Who discovered NUCLEI ACID? Where is it found? Structure? How many kinds?
Swiss physician and chemist, Friedrich Miescher nuclein had acidic properties and hence it was renamed as nucleic acid Nucleic acids are present in all living things, from virus to man. These macromolecules are present either in the free-state or bound to proteins as nucleoproteins. Like proteins, the nuclei acids are biopolymers of high molecular weight with mononucleotide as their sub-units (monomers). The nucleic acids are the long chains of polynucleotide in which mononucleotides are linked to each other. There are two kinds of nuclei acids, deoxyribonucleic acid (DNA) and ribonucleic acid (RNA).
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Where is DNA and RNA found?
DNA is found mainly in the chromatin of the cell nucleus whereas most of the RNA (90%) is present in the cell cytoplasm and a little (10%) in the nucleolus.
65
what is nucleotide?
As we now know that nucleic acid is a polymer of nucleotide, a question arises here what is nucleotide? Nucleotide is a molecule which consists of following three parts. Pentose sugar (5 carbon) Phosphoric acid (H3PO4) Nitrogenous base (Organic base)
66
Which is Pentose sugar found in nucleotide?
Pentose sugar found in nucleotide is either Ribose (C5H10O5) or Deoxyribose (C5H10O4) Ribose is found in RNA nucleotides while Deoxyribose sugar is found in DNA nucleotides, This sugar behaves as BASIC SKELETON.
67
Where is Phosphoric acid found in nucleotide?
Phosphoric acid is common in all nucleotides. It is attached with 5th carbon of pentose sugar in each nucleotide.
68
What r they types of nitrogenous bases And which r found in RNA and DNA?
There are two basic types of nitrogenous bases i.e. Purine and Pyrimidine. Purine includes two nitrogenous bases named Adenine (A) and Guanine (G) while pyrimidine includes three nitrogenous bases cytosine (C), thymine (T) and uracil (U). The nucleotides differ on the basis of their nitrogenous bases.
69
How does Formation of nucleotide happen?
Formation of nucleotide takes place in two steps. At first step the nitrogenous base combines with pentose sugar at its first carbon to form a nucleoside. At the second step the phosphoric acid combines with the 5th carbon of pentose sugar to form a nucleotide.
70
What are Mononucleotide?
Mononucleotide Generally, nucleotides are found in the nucleic acid as polynucleotide but they are also found as mononucleotide and dinucleotide. Mononucleotides exist singly in the cell or as a part of other molecules. These are not the part of DNA or RNA Some of these have extra phosphate groups e.g.ATP (Adenosine triphosphate).
71
What is ATP (Adenosine triphosphate)?
(Adenosine triphosphate).It is the most important among these nucleotide. It is an unstable molecule and carries cnergy from place to place within a cell. It is synthesized from ADP (Adenosine diphosphate) and inorganic phosphate by capturing energy during photosynthesis. This energy is utilized to derive energy demanding reactions such as in synthesis of proteins, lipids, carbohydrates, mechanical energy for cyclosis, contractility. cell. division, movement of flagella, active transport etc. ATP consists of Adenosine (Adenine and ribose sugar) and three phosphate; among them two are energy rich phosphate bond.
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How much energy released when ATP to ADP
During conversion of ATP into ADP, the free energy releases which is considerable large i.e. 31.81 Kj or 7.3 K.Cal/ mole energy.
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What are Dinucleotides? Example?
Some times two nucleotides are covalently bounded together, to form compounds are called dinucleotide. One of the well-known dinucleotide is Nicotinamide adenine dinucleotide (NAD).
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What is NAD? What is a co enzyme?
Nicotinamide is a vitamin constituent. The two nucleotides are linked by phosphate of one another. NAD is a co-enzyme [co-enzymes are the organic molecules (non-protein) which bind to enzyme (protein) and serve as a carrier for chemical groups or electrons] that carries electron and work with dehydrogenase enzyme. It removes two hydrogen atom from its substrate, both electrons, but only one hydrogen ion is passed to NAD which reduces it to NADH.
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What are Polynucleotide?
Polynucleotide (Nucleic acids as informational macromolecules) nucleic acids are the polynucleotides.
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What is the function of nucleic acid?
the unique and premiere service of nuclei acid is as repositories (store house) and transmitters of genetic information. They make it possible for cells to function according to specific patterns and give rise to new cells that either function similarly or develop new functions, according to plans encoded in the nucleic acid.
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How is genetic information stored in nucleic acid? How many nucleotides make up each informational nucleic acid molecule? How many letters in a genetic code?
Genetic information is encoded in a nucleic acid molecule in a particular and simple fashion. Four different nucleotides make up each informational nucleic acid molecule. They are three letters in a genetic code. The nucleic acid molecule is some what linear and the units (nucleotides) like letters on a printed page or digital magnetic signals on a computer tape. In the proper machinery, these codes (nuçleotides) can be interpreted.
78
How does nucleic acid help with protein synthesis? And with heredity?
The cell interpretes the information present in many nucleic acid molecules as sequence of amino acid in protein and peptide molecules. The synthesis of proteins with definite sequences of amino acid and controlled amounts of protein is observed as the expression of heredity of an organism which generally give the physical appearance of that particular character.
79
How are DNA and RNA different?
DNA contains Adenine, Guanine, Cytosine and Thymine containing nucleotides where as RNA contain Adenine, Guanine, Cytosine and Uraeil containing nucleotide. DNA is double stranded helical structure while RNA is mainly a single stranded structure except rRNA. DNA is of just one kind while RNA is of three kinds rRNA, tRNA and mRNA (r = ribosomal, t = transfer m = messenger). DNA contains deoxyribose sugar while RNA contain ribose sugar in their nucleotides.
80
How is DNA as Hereditary material? first evidence that DNA is the hereditary material? Who discovered living bacteria can acquire genetic material from dead bacteria and transform live bacteria from non- virulent to virulent?
Transformation of one type of bacteria into another type and infection of bacteria by bacteriophage provides first evidence that DNA is the hereditary material. Griffith discovered that living bacteria can acquire genetic material from dead bacteria and transform live bacteria from non- virulent to virulent. Avery and his colleagues showed that the genes taken up living bacteria during transformation were composed of DNA.
81
What does bacteriophage consists of? Who experimented and found out DNA must be the genetic material?
A bacteriophage consists solely of DNA and protein. When it infects a bacterium, the phage injects its DNA only into the bacterium, where it directs the synthesis of more phage Hershey and Chase thus experimentally confirmed that DNA must be the genetic material.
82
how the DNA behaves as genetic material? How many amino acids?
DNA is a polynucleotide chain in which nucleotides are arranged in a specific manner. In all nucleotides of DNA, phosphate and deoxyribose sugars are always common but the nitrogenous bases are different. In other words, we can say that each DNA has specific sequences of nitrogenous bases. These sequences of bases in DNA can encode vast amount of information. Since the nitrogenous bases are of four type, 20 amino acids.
83
RNA as a carrier of Information? Where is DNA located in eukaryotes? How does RNA help with passing info?
In Eukaryotic cells DNA is located in the nucleus while most of the synthesis and metabolic functions occur in the cytoplasm under the instruction of DNA. Therefore, DNA requires some intermediate molecules that carry informations from DNA to the cytoplasm, These molecules are ribonucleic acids or RNA's. Genetic infor- mation flows in a cell from DNA to mRNA than to cytoplasm in a two step process for the synthesis of protein.
84
What is Transcription?
Transcription: Initiation site In this step information contained in a specific segment of DNA is copied into RNA. The RNA which perform this process is called the messenger RNA (mRNA). It carries information from the nucleus to the ribsomes.
85
What is Translation?
Translation: In this step two other types of RNA; transfer RNA (tRNA) and ribosomal RNA (rRNA) translate the information of messenger RNA into the specific sequence of amino acids which help to synthesize the protein.
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What are CONJUGATED MOLECULES? And their types?
Conjugated molecules are formed when biomolecules of two different groups combine with each other acting as unit molecule. When a molecule of carbohydrate combines with protein molecules, they form glycoprotein. Following are the types of conjugated molecules. 1) Glycolipids or cerebrosides 2) Glycoproteins or Mucoids ¡¡i) Nucleoproteins iv) Lipoproteins
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What are Glycolipids? Aka
These are conjugate of lipids and carbohydrats also contain some nitrogenous compound. Glycolipids are also called cerebrosides because it is important constituent of brain. Glycolipids and Sulpholipids are also the examples of Glycolipids found commonly in chloroplast
88
What are Glycoprotein? Aka
Glycoproteins or Mucoids: Glycoproteins are formed when a molecule of carbohydrate combine with a protein molecules. Most of the oligo and polysaccharides in the animals and plants cells are linked covalently to protein molecules and are called glycoproteins. It contains small amount of carbohydrate i.e less than 4% e. g egg albumin, gonadotrophic hormone etc. The cell membrane also possesses some amount of glycoproteins.
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What are Nucleoproteins? pH? water??
These are found in the nucleus conjugated with nucleic acid. On hydrolysis nucleoproteins give rise to simple proteins and nucleic acids. These are weakly acidic and soluble in water.
90
What are Lipoproteins?
They are conjugates of lipids and proteins. The prosthetic groups of these are lipids such as lecithin and cholesterol. Lipoproteins help in the transportation of lipid in the blood plasma as low density protein or free fattyacid. They also occur as component of membrane of mitochondria, endoplasmic reticulum and nucleus. The electron transport system in mitochondria appears to contain large amount of lipoproteins. Lamellar lipoprotein system occur in the myelin sheath of nerves photoreceptive structures, chloroplast and the membranes of bacteria.
91
What does Protoplasm consist of?
Protoplasm is mainly consist of H,O, proteins, carbohydrates, lipids, nuclete acids and conjugated molecules.
92
most abundant and important component in living cell?
Water is most abundant and important component in living cell.
93
most important biomolecule of the cell carry out all cell activities?
Proteins are the polymers of amino acid, most important biomolecule of the cell carry out all cell activities as enzymes.
94
hydrated carbon?
Carbohydrate are the hydrated carbon, these are the immediate source of energy.
95
diverse group of non-polar bio-molecules, found as?
Lipids are the important diverse group of non-polar bio-molecules, found as acyglycerol (fats and oils), waxes, phospholipids and terpenoids.
96
Functions of lipids?
Lipids provide, fats, hormones, protective layers, precursors of vitamins and aroma to bodies.
97
the acidic compounds derived from nucleus found in two forms as?
Nucleic acids are the acidic compounds derived from nucleus found in two forms as DNA and RNA.
98
basic unit of nucleic acid consist of?
Nucleotide is the basic unit of nucleic acid consist of a molecule of pentose sugar bonded with phosphate and nitrogenous base.
99
mononucleotide?
ATP is a mononucleotide found in free state as energy rich molecules.
100
hereditary material; having specific sequence of?
DNA is the hereditary material; having specific sequence of nitrogenous bases which encode vast amount of information as genetic code.
101
behave as carrier of information from DNA to ribosome for?
RNA behave as carrier of information from DNA to ribosome for protein synthesis.
102
'Two different group of biomolecules combine together to form conjugated molecule like?
'Two different group of biomolecules combine together to form conjugated molecule. Like glycolipids, glycoprotein, nucleoprotein and lipoprotein.
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