Biotechniques Flashcards

(33 cards)

1
Q

What is the role of the ribosome recycling factor in bacteria?

A

Preparing the ribosome for another round of translation

Ribosome recycling is essential for efficient protein synthesis in bacteria.

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2
Q

What are the required components for amino acid activation?

A

Amino acids, tRNAs, ATP, Mg2+

These components are necessary for the charging of tRNAs with their respective amino acids.

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3
Q

List the components required for chain initiation.

A
  • fmet-tRNAfmet
  • initiation codon (AUG)
  • 30S and 50S ribosomal subunits
  • GTP
  • Mg2+
  • initiation factors (IF-1, IF-2, and IF-3)

These components work together to start the translation process.

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4
Q

What are the components required for chain elongation?

A
  • 70S ribosome
  • codons of mRNA
  • GTP
  • Mg2+
  • elongation factors (EF-Tu, EF-Ts, EF-G)
  • aminoacyl-tRNAs

These elements are crucial for the elongation phase of protein synthesis.

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5
Q

What are the components needed for chain termination?

A
  • 70S ribosome
  • termination codons (UAA, UAG, or UGA)
  • release factors (RF-1, RF-2, or RF-3)
  • GTP
  • Mg2+

These components facilitate the release of the completed polypeptide from the ribosome.

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6
Q

True or False: Polysomes are assemblages of several ribosomes bound to one mRNA.

A

True

Polysomes allow for the simultaneous translation of multiple copies of a protein from a single mRNA strand.

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7
Q

Define missense mutation.

A

A change to a different codon

An example is the Glu to Val mutation in sickle cell anemia.

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8
Q

What does nonsense mutation introduce?

A

A stop codon (UAA, UAG, or UGA)

This results in the shortening of the length of the protein product.

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9
Q

What is a frameshift mutation?

A

Insertion or deletion of one or more bases

This type of mutation alters the reading frame of the genetic code.

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10
Q

What is biotechnology?

A

The use of living organisms to make a product or run a process

It encompasses various applications including genetic engineering.

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11
Q

What are the basic necessities when working with nucleic acids?

A
  • Prepare DNA fragments
  • Separate DNA fragments in a mixture
  • Detect a specific nucleic acid sequence
  • Propagate the DNA to use it again

These steps are essential for manipulating and analyzing DNA.

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12
Q

What do restriction endonucleases do?

A

Recognize specific DNA sequences and break the phosphodiester bond

They are crucial for cutting DNA at specific sites.

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13
Q

What are sticky ends in DNA?

A

Overhangs of single-stranded DNA

They can re-join because they are complementary.

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14
Q

What is the process of creating recombinant DNA?

A
  • Cut DNA from two sources to create complementary sticky ends
  • Join complementary ends by base-pairing
  • Create covalent bonds between strands using DNA ligase

This process allows for the combination of genetic material from different organisms.

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15
Q

What is gel electrophoresis used for?

A

Separation of DNA based on its length

It takes advantage of the negative charge of DNA to migrate towards the positive electrode.

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16
Q

Define cloning in biotechnology.

A

The process of making identical copies

Cloning is fundamental for creating multiple copies of a specific DNA segment.

17
Q

What is a plasmid?

A

Extra-chromosomal circular molecules of DNA capable of replication inside bacteria

Plasmids are commonly used as vectors in genetic engineering.

18
Q

What is transformation in the context of bacteria?

A

The uptake of a plasmid by bacteria

This process allows for the replication of foreign genes within bacterial cells.

19
Q

What are expression vectors?

A

Plasmids constructed to allow transcription and translation of a foreign gene in bacteria

They enable the synthesis of large amounts of human proteins for research and medical use.

20
Q

What is the purpose of PCR?

A

To replicate specific fragments of DNA in vitro

PCR can amplify a single DNA molecule into billions of copies in a few hours.

21
Q

What is Taq polymerase?

A

A heat-stable DNA polymerase used in PCR

It allows for DNA amplification at high temperatures.

22
Q

What is the significance of reverse transcription?

A

It produces a cDNA molecule from mRNA

This technique avoids the intron problem since introns are removed in mRNA.

23
Q

What did Katalin Karikó and Drew Weissman discover?

A

Replacing uridine with modified bases like pseudouridine reduces inflammatory response in mRNA

Their work laid the foundation for mRNA vaccines against COVID-19.

24
Q

What significant modification did Katalin Karikó and Drew Weissman discover for mRNA vaccines?

A

Replacing uridine with pseudouridine to reduce the inflammatory response

This modification was reported in the journal Immunity in 2005.

25
In what year did Karikó and Weissman show that pseudouridine could increase protein production from mRNA?
2008 ## Footnote This finding was a continuation of their research on mRNA technology.
26
What did Rickard Sandberg state about the mRNA vaccines developed for COVID-19?
They were built upon mRNA technology and research on stabilized spike protein and lipid nanoparticles ## Footnote This allowed for the rapid development and approval of two highly effective mRNA vaccines.
27
What role did lipid nanoparticles (LNPs) play in the mRNA vaccines?
They were used to deliver the mRNA vaccines successfully ## Footnote Pharmaceutical companies like Pfizer and Moderna contributed specialized LNPs.
28
What are some potential applications being pursued by the pharmaceutical industry for RNA therapeutics?
* Treat cancers * Treat inherited diseases ## Footnote The delivery strategies used for COVID vaccines are expected to be applied to therapeutic RNA molecules.
29
What are the two RNA processing pathways mentioned?
* Promotes specific degradation * Protects RNAs like tRNA ## Footnote These pathways are crucial for RNA interference.
30
What therapeutic approach does small interfering RNA (siRNA) use?
It knocks down disease-causing proteins ## Footnote This approach is promising for cancer and viral infections.
31
True or False: RNA interference and micro RNA (miRNA) pathways are similar in function.
True ## Footnote Both pathways are involved in inactivating mRNA.
32
Fill in the blank: The success of the COVID vaccines has opened the floodgates for R & D to make new _______.
RNA therapeutics ## Footnote This includes RNA vaccines that will benefit future generations.
33
What is the significance of the study by Mahmoodi Chalbatani et al. regarding siRNAs?
It discusses their use in cancer therapy through a nano-based approach ## Footnote This highlights the potential of siRNAs in medical applications.