chapter 11 Flashcards

(50 cards)

1
Q

What is the primary function of gene regulation in bacteria?

A

To control the levels of gene transcription and RNA translation

Gene regulation allows bacteria to adapt to environmental changes and manage energy expenditure efficiently.

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2
Q

What are the two main types of regulation in bacterial gene expression?

A

Positive and negative regulation

Positive regulation requires an activator protein for transcription, while negative regulation requires the absence of a repressor.

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3
Q

What is the role of the lac repressor protein?

A

To bind to the lac operator DNA and prevent transcription of the lac operon

The lac repressor is encoded by the I gene and acts negatively on gene expression.

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4
Q

What happens when lactose is present in relation to the lac operon?

A

Lactose binds to the Lac repressor, causing an allosteric transition that allows transcription to occur

This process is known as induction.

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5
Q

Define ‘operon’.

A

A DNA segment encoding a multigenic mRNA for genes sharing an adjacent promoter and regulatory region

The lac operon includes segments P, O, Z, Y, and A.

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6
Q

What is catabolite repression?

A

A regulatory mechanism where the presence of glucose inhibits the production of enzymes for metabolizing other sugars like lactose

This is an example of prioritizing energy sources.

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7
Q

What is the role of cAMP in the regulation of the lac operon?

A

cAMP acts as an allosteric effector of the catabolite activator protein (CAP), enhancing transcription when glucose levels are low

High glucose levels lead to low cAMP levels, inhibiting lac operon expression.

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8
Q

What constitutes a genetic switch?

A

The functional relationship between regulatory proteins and binding sites within a DNA sequence that controls gene transcription

These switches determine whether genes are expressed.

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9
Q

What are operators in the context of bacterial gene regulation?

A

DNA sequences near the promoter that serve as binding sites for repressor proteins

Operators play a critical role in negative regulation.

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10
Q

What do the Z, Y, and A genes in the lac operon encode?

A
  • Z gene encodes β-galactosidase
  • Y gene encodes permease
  • A gene encodes a transacetylase

These genes are coordinately regulated to metabolize lactose.

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11
Q

True or False: The lac operon is an example of both positive and negative control.

A

True

The operon utilizes both a repressor (negative control) and CAP (positive control).

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12
Q

What is the function of allosteric effectors?

A

To bind to regulatory proteins and modify their shape and function

This interaction can activate or inactivate the regulatory protein.

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13
Q

Fill in the blank: The _______ is the site on DNA where RNA polymerase binds to initiate transcription.

A

[lac promoter]

The lac promoter is crucial for the transcription of the lac operon genes.

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14
Q

What is the significance of Jacob and Monod’s studies on lactose metabolism?

A

They provided insights into gene regulation mechanisms and the genetic basis of the lac operon

Their work laid foundational knowledge for understanding operons in prokaryotes.

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15
Q

What are constitutive mutations?

A

Mutations where lac operon genes are expressed regardless of the presence of an inducer

These mutations reveal insights into the regulatory mechanisms of the lac operon.

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16
Q

What does it mean for a mutation to be cis-acting?

A

It regulates the expression of an adjacent transcription unit on the same DNA molecule

Operator mutations are an example of cis-acting mutations.

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17
Q

What is the role of CAP in the lac operon?

A

CAP activates transcription of the lac operon when cAMP is present

This is part of the positive control mechanism for the operon.

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18
Q

What is the function of the Lac repressor in the absence of lactose?

A

It binds to the operator and prevents transcription of the lac operon

This is a key aspect of negative regulation.

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19
Q

How does glucose influence the lac operon?

A

High glucose levels inhibit cAMP production, preventing activation of the lac operon

This demonstrates catabolite repression in bacterial metabolism.

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20
Q

What type of regulatory proteins control the lac operon?

A

Positive – CAP, Negative – Lac repressor

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21
Q

What does the arabinose (ara) operon include?

A

Genes for enzymes that break down arabinose

22
Q

What are the upstream regulatory sequences of the ara operon?

A

Promoter (P), initiator (I), and operator (O)

23
Q

What does the araC gene encode?

A

A transcription factor protein called AraC

24
Q

What initiates transcription in positive regulation of the ara operon?

A

Binding of AraC protein to the araI region when bound by arabinose

25
What system operates to monitor glucose levels in the ara operon?
CAP-cAMP catabolite repression system
26
What happens to AraC protein in the absence of arabinose?
It binds to both araO and araI regions, producing a loop that inhibits transcription
27
What is the function of AraC protein?
It can act as an activator or repressor
28
What are the two life cycles of bacteriophage?
Lytic and Lysogenic
29
When is the lytic life cycle engaged?
When resources are abundant
30
What do clear plaques on agar plates indicate?
Lysing of bacteria by phages
31
What mutations result in phages that cannot lysogenize bacteria?
Mutations in cI, cII, or cIII genes
32
What does the cI gene encode?
The λ repressor that blocks the lytic life cycle
33
What does the cro gene encode?
A repressor that blocks the lysogenic life cycle
34
What is the transcription state during the lytic cycle?
cI 'off' and cro 'on'
35
What is the transcription state during the lysogenic cycle?
cI 'on' and cro 'off'
36
What influences the outcome of the race between λ repressor and Cro?
Gene organization in the λ phage genome
37
What initiates transcription of cI and cro in the λ phage genome?
Two promoters, PL and PR
38
What happens to cII protein when resources are abundant?
It is degraded by proteases
39
What is the role of the λ repressor in the lysogenic cycle?
It shuts off all phage gene expression except for itself
40
What are the operator sequences in the genetic switch of cI and cro?
OR3, OR2, and OR1
41
What is the effect of λ rep binding to OR1?
It blocks promoter PR and cro expression, leading to the lytic cycle
42
What is the effect of Cro binding to OR3?
It blocks promoter PRM and cI expression, leading to the lysogenic cycle
43
What causes the stability of the lysogenic life cycle to end?
Changes in environmental conditions leading to degradation of λ repressor
44
What common DNA-binding motif do λ repressor and Cro proteins possess?
Helix-turn-helix
45
What allows different regulatory proteins to interact with DNA?
Different DNA binding sites or different affinities
46
What determines the specificity of DNA binding by regulatory proteins?
Differences in the side chains of amino acids that contact DNA bases
47
What is a regulon?
A group of genes expressed under certain conditions with a common DNA sequence in their promoter region
48
What is the role of σ factors in Bacillus subtilis?
They control clusters of unlinked genes during stress responses
49
What is the function of σF in Bacillus subtilis?
Regulates a group of over 40 genes
50
What triggers the processing of inactive pro-σE in Bacillus subtilis?
A secreted protein from one of the σF-regulated genes