chapter 7 Flashcards

(36 cards)

1
Q

What was the experimental evidence that DNA is the genetic material before the discovery of the double helix?

A

Frederick Griffith’s transformation experiment showed that R strain bacteria could be transformed into S strain bacteria by cell debris from dead S strain cells.

This suggested that some substance from the S strain could convert the R strain cells.

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2
Q

What is the one-gene-one protein hypothesis?

A

It suggests that each gene corresponds to a specific protein.

Proposed by Beadle and Tatum.

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3
Q

Who demonstrated that DNA is the transforming agent in Griffith’s experiment?

A

Oswald Avery, Colin MacLeod, and Maclyn McCarty in 1944.

They used a reductionist approach to identify DNA as the transforming substance.

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4
Q

What method did Hershey and Chase use to confirm that DNA is the hereditary material?

A

They used radioactive labeling of DNA and proteins in T2 phage and tracked which substance entered bacterial cells.

They incorporated 32P into DNA and 35S into proteins.

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5
Q

What are the key properties necessary for hereditary material?

A
  • Faithful replication
  • Massive information content
  • Ability to change (mutability)

These properties ensure that genetic information is accurately passed on and can evolve.

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6
Q

What are the three parts of a nucleotide?

A
  • Phosphate group
  • Sugar (deoxyribose)
  • Nitrogenous base (A, T, C, G)

The structure of DNA is based on these nucleotides.

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7
Q

What do Chargaff’s rules state about nucleotide composition?

A
  • Amount of T = A
  • Amount of C = G
  • Amount of pyrimidines (T + C) = amount of purines (A + G)

Chargaff’s rules helped in understanding DNA structure.

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8
Q

What did Rosalind Franklin contribute to the understanding of DNA structure?

A

Her X-ray diffraction data showed that DNA is long, skinny, and helical.

This data was crucial for Watson and Crick’s model.

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9
Q

How do hydrogen bonds contribute to the stability of DNA?

A

A-T base pairs form two hydrogen bonds, while G-C base pairs form three hydrogen bonds, making G-C stretches more stable.

This affects the overall stability and integrity of the DNA structure.

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10
Q

What is the significance of the antiparallel orientation of DNA strands?

A

It allows for complementary base pairing and proper replication.

One strand runs 5’ to 3’ and the other runs 3’ to 5’.

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11
Q

What is semiconservative replication?

A

Each new DNA strand consists of one parental strand and one newly synthesized strand.

This model was confirmed by the Meselson-Stahl experiment.

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12
Q

What is the role of DNA polymerase in DNA replication?

A

DNA polymerase synthesizes new DNA strands by adding deoxyribonucleotides to a growing chain using the parent strand as a template.

DNA polymerase I and III are key enzymes involved in this process.

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13
Q

What is the function of the replisome?

A

The replisome is a complex of proteins that coordinate the replication of DNA, including unwinding the double helix and synthesizing new strands.

It includes helicase, DNA polymerases, and accessory proteins.

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14
Q

What is the function of DNA ligase?

A

DNA ligase connects adjacent fragments of DNA on the lagging strand during replication.

It forms phosphodiester linkages between Okazaki fragments.

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15
Q

What is the estimated error rate during DNA replication?

A

About 1 error per 1 billion bases replicated.

This accuracy is enhanced by proofreading and repair mechanisms.

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16
Q

What is the role of telomeres and telomerase in DNA replication?

A

Telomeres protect chromosome ends, and telomerase replicates them to prevent loss of genetic information during cell division.

Defective telomere replication can lead to health issues.

17
Q

True or False: DNA replication is a slow process in E. coli.

A

False. DNA replication in E. coli can occur at 2000 bp/second.

This rapid replication is crucial for bacterial growth.

18
Q

What transforms DNA pol III into a processive enzyme?

A

DNA gyrase

DNA gyrase is a type of topoisomerase that removes extra twists in DNA.

19
Q

What causes over winding at unwound regions during DNA replication?

A

Unwinding one region

This refers to the mechanical stress introduced by the unwinding of DNA strands.

20
Q

What is the fixed point where prokaryotic replication begins called?

A

Origin

The origin is a specific location on the DNA where replication initiates.

21
Q

What protein molecules bind to DnaA boxes during prokaryotic replication initiation?

A

DnaA

DnaA proteins recognize specific sequences to initiate strand separation.

22
Q

What triggers strand separation at AT-rich sequences?

A

DnaA binding

AT-rich sequences are easier to unwind due to fewer hydrogen bonds compared to GC-rich sequences.

23
Q

What is the function of helicase (DnaB) in DNA replication?

A

Unwind DNA in a 5’ to 3’ direction

Helicase is crucial for separating the two strands of DNA, allowing replication to occur.

24
Q

Which enzyme and holoenzyme are recruited to the replication fork?

A

Primase and DNA pol III

These components are essential for synthesizing RNA primers and elongating the DNA strand.

25
What is PCNA in relation to eukaryotic DNA replication?
Eukaryotic β-clamp ## Footnote PCNA (proliferating cell nuclear antigen) is a protein that helps in the processivity of DNA polymerase.
26
How many known components does the E. coli replisome have?
13 known components ## Footnote This contrasts with yeast and mammal replisomes, which have at least 27 components.
27
What is the significance of nucleosomes during DNA replication?
DNA is packed into chromatin ## Footnote Nucleosomes consist of DNA wrapped around histone proteins, requiring additional proteins for disassembly and reassembly during replication.
28
How many replication origins are known in yeast?
400 origins ## Footnote Eukaryotes typically have multiple origins of replication, unlike prokaryotes.
29
What happens to chromosomes at every cell division?
Chromosome shortens ## Footnote This shortening can lead to the loss of genes over time.
30
Who discovered telomerase and its function?
Elizabeth Blackburn and Carol Greider ## Footnote They found that telomerase adds TTGGGG repeats to chromosome ends to maintain chromosome integrity.
31
What is the Hayflick limit?
Number of times a normal cell population will divide before stopping ## Footnote This limit is related to telomere length and cellular aging.
32
What is the telomeric cap structure?
Protective cap that hides the reactive 3’ overhang ## Footnote This structure prevents DNA repair machinery from mistakenly repairing the chromosome ends.
33
What can breaks in DNA trigger?
Programmed cell death, or apoptosis ## Footnote This is a protective mechanism to eliminate cells with damaged DNA.
34
What mutation causes a rare premature aging disease?
Mutation to WRN gene ## Footnote Werner syndrome is associated with shortened telomeres and premature aging.
35
Fill in the blank: The enzyme _______ adds TTGGGG repeats to the ends of chromosomes.
telomerase
36
True or False: Most somatic cells express telomerase.
False ## Footnote Most somatic cells do not express telomerase, leading to telomere shortening.