chapter 8 Flashcards

(41 cards)

1
Q

What is a key structural difference between RNA and DNA?

A

RNA is typically a single-stranded molecule and contains ribose sugar instead of deoxyribose.

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2
Q

List the different classes of RNA found in a cell.

A
  • Messenger RNA (mRNA)
  • Transfer RNA (tRNA)
  • Ribosomal RNA (rRNA)
  • Small nuclear RNA (snRNA)
  • MicroRNAs (miRNAs)
  • Small interfering RNAs (siRNAs)
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3
Q

How is RNA polymerase positioned to start transcription?

A

RNA polymerase is recruited to a specific gene sequence known as the promoter.

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4
Q

What modifications occur to eukaryotic mRNA before it leaves the nucleus?

A

Eukaryotic mRNA undergoes capping, polyadenylation, and splicing.

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5
Q

Why is the discovery of self-splicing introns important?

A

It challenges the traditional view of gene expression and suggests that RNA can have catalytic functions.

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6
Q

What are non-protein-coding RNAs (ncRNAs)?

A

ncRNAs are RNA molecules that do not encode proteins but have regulatory roles.

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7
Q

True or False: More complex organisms have larger genomes with more genes.

A

False - Some complex organisms, like rice, have more genes than humans despite being less complex.

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8
Q

What is the central dogma of molecular biology?

A

The central dogma describes the flow of genetic information from DNA to RNA to protein.

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9
Q

What does the term ‘pulse-chase experiment’ refer to in RNA research?

A

It is a technique used to study the synthesis and degradation of RNA.

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10
Q

What is the role of ribozymes?

A

Ribozymes are RNA molecules that can catalyze biological reactions.

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11
Q

Fill in the blank: RNA nucleotides possess the bases adenine, cytosine, guanine, and ______.

A

uracil

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12
Q

What are the key stages of transcription?

A
  • Initiation
  • Elongation
  • Termination
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13
Q

What is the function of promoters in transcription?

A

Promoters are sequences found upstream of the transcription initiation site that recruit RNA polymerase.

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14
Q

What is the difference between intrinsic and rho-dependent termination in transcription?

A

Intrinsic termination involves a hairpin structure in RNA, while rho-dependent termination requires the Rho protein to separate RNA from RNA polymerase.

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15
Q

What are the complications encountered in eukaryotic transcription?

A
  • Identifying genes within vast genomes
  • Separation of transcription and translation in time and space
  • Packaging of DNA into chromatin
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16
Q

What is the difference between prokaryotic and eukaryotic RNA processing?

A

Prokaryotic RNA is translated immediately after transcription, while eukaryotic RNA must be processed before translation.

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17
Q

What is a 5’ untranslated region (5’ UTR)?

A

The region from the transcription initiation site to the start codon of translation.

18
Q

What is a key complication encountered in eukaryotic transcription?

A

Must identify the genes to be transcribed within vast genomes.

19
Q

In eukaryotes, how are transcription and translation separated?

A

Separated in time and space.

20
Q

What is the TATA box?

A

A consensus sequence in promoter regions that is bound by TATA-binding protein (TBP).

21
Q

What is the function of TATA-binding protein (TBP)?

A

It recruits other General Transcription Factors (GTFs) and RNA polymerase to the promoter region.

22
Q

What forms the pre-initiation complex in eukaryotic transcription?

A

GTFs and RNA polymerase.

23
Q

What triggers the initiation of transcription in eukaryotes?

A

Phosphorylation of the C-terminal domain (CTD) of RNA polymerase II.

24
Q

What is cotranscriptional processing of RNA?

A

Modification of primary transcripts during elongation into mature mRNA.

25
What is the first function of RNA polymerase II associated enzymes?
Capping - adding a 7-methylguanosine cap to the 5’ end of the transcript.
26
What is splicing in RNA processing?
The process of removing intron sequences from RNA primary transcripts and ligating remaining exons.
27
What is the polyadenylation signal sequence?
AAUAAA or AUUAAA near the 3’ end of the transcript.
28
What is the function of the poly(A) tail?
Aids in termination of transcription, mRNA export from nucleus, mRNA stability, and efficient translation.
29
What is alternative splicing?
The process by which different combinations of exons are rejoined from a gene’s primary transcripts to produce multiple distinct proteins.
30
What is the GU-AG rule in splicing?
Common sequence features that occur at exon-intron junctions.
31
What is a spliceosome?
A complex of snRNA and proteins that removes introns from pre-mRNA.
32
What are ribozymes?
Catalytic RNAs that can catalyze biochemical reactions, including splicing.
33
What is the RNA World hypothesis?
The idea that early life was based on RNA, which can catalyze reactions and encode genetic information.
34
What are microRNAs (miRNAs)?
A class of functional RNA that regulates the amount of protein produced by other eukaryotic genes.
35
What is the role of Dicer in miRNA production?
Recognizes double-stranded RNAs and cleaves them into ~22 nucleotide products.
36
What does RISC stand for?
RNA-induced silencing complex.
37
What is the difference between siRNAs and miRNAs?
siRNAs silence the genes that produce them, while miRNAs generally repress gene expression.
38
What phenomenon occurs when both transgene and wild-type gene do not produce any protein product in plants?
Cosuppression.
39
What is RNA interference (RNAi)?
A general name for the occurrence of gene silencing and viral resistance by siRNAs.
40
What is the outcome of siRNA action on mRNAs?
Targets mRNAs for degradation.
41
What did David Baulcombe's experiment with tobacco plants demonstrate?
Plants could silence an invading virus by producing short 25 nucleotide RNA.