D2.2 Gene Expression Flashcards

(43 cards)

1
Q

How does gene expression relate to phenotypes

A

it is the mechanism through which info in genes has effects on the phenotype

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2
Q

What are transcription factors

A

they are proteins that bind to specific sequences of DNA to control transcription
Each has a DNA binding site that allows it to bind to enhancer or promoter sequences

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3
Q

What are enhancer sequences

A

regulatory sequences that enhance the transcription of an associated gene when bound by transcription factors

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4
Q

Where are regulatory sequences found

A

usually upstream of the gene being transcribed but can sometimes be downstream

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5
Q

what is the most common form of gene control

A

regulation of transcription

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6
Q

How is the control of the degradation of mRNA a means of regulation translation

A

for mRNA to be broken down, the 3’ poly A tail must be degraded before the mRNA is broken down.
Ensures proteins are only synthesized when needed and mRNA is removed afterwards

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7
Q

what is epigenesis

A

the development of an organism by differentiation from an undifferentiated zygote
Essentially, the development of patterns of differentiation in the cells of a multicellular organism

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8
Q

What is epigenetics

A

the study of heritable changes in gene activity that are not caused by changes in DNA base sequences

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9
Q

what are the mechanisms through which gene activity is changed

A

DNA methylation and histone modifications

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10
Q

what is altered in epigenetic changes

A

the phenotype

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11
Q

what is the proteome

A

refers to all the proteins expressed within a cell, tissue or organism at a certain time

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12
Q

What is the genome

A

the whole of the genetic info of an organism
It is unique

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13
Q

how does the uniqueness of the genome affect the proteome

A

because its unique, the proteome it expresses is also unique

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14
Q

how can genome stay the same and proteome change

A

genome is the same in all cells of the same organism but diff tissues have different proteins
This means proteomes vary with the function, location or environmental conditions of the cell

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15
Q

what is the transcriptome

A

the range of mRNA transcripts produced in a specific cell/tissue at a particular time

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16
Q

how are genome, transcriptome and proteome related

A

transcriptome will determine which proteins are synthesized within a cell, which means it is dependent on which parts of the genome are activated

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17
Q

what is methylation

A

the addition of a methyl group within the chromatin , to the DNA molecule itself at the promoter

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18
Q

what are epigenetic tags and where are they found

A

the methyl group which is attached to the cytosine
occurs while DNA is wrapped around the histone proteins

19
Q

what does methylation do

A

methylation of amino acids in histones either enables or disables the recruitment of regulatory proteins to the chromatin, causing transcription to be repressed or activated

20
Q

what can be the reason for methylation

A

external conditions which lead to the switching off of certain genes

21
Q

what happens once methylation has occurred

A

it can remain like that from cell division to cell division

22
Q

what is epigenetic inheritance

A

the acquisition of characteristics gained by a parent in their lifetime and passed onto their offspring.
this happens through modification of chromatin via epigenetic tags

23
Q

what is the result of epigenetic inheritance

A

phenotypic changes in a cell or organism can be passed on to daughter cells or offspring without changes

24
Q

what can modify DNA and histone methylation patterns

A

air pollution , chemicals
can lead to CV diseases, asthma

25
what is the purpose of epigenetic reprogramming
remove epigenetic changes that might be caused by the environment. Evolved to prevent changes from being transmitted across generations
26
what is imprinting
when epigenetic tags survive and pass unchanged from parent to offspring, through imprinting
27
how does imprinting work in sperms and eggs
in sperm development, maternal tags are silenced and in egg development, paternal tags are silenced
28
how does the way lions mate affect the genes passed on
female lions mate with multiple males , so male lions pass on growth encouraging gene females evolved genes that are antigrowth
29
how does the way tigers mate affect the genes passed on
female only mates with one male, who is equally related to all cubs no growth encouraging gene and female has no anti growth imprinting gene
30
what happens if a female tiger is crossed with a male lion
a liger is produced which is bigger than parents because no limit to growth
31
what happens if male tiger and female lion is crossed
a tigon is produced which is same size or smaller than both parents because female has anti growth genes
32
what are differences within family due to
genetic factors - controlled by genes environmental factors combination of both
33
why can monozygotic twins not be distinguished by DNA fingerprinting
they came from the same dividing cell so are genetically identical
34
what steroid hormones affect gene expression
oestradiol, progesterone and testosterone bind to receptors in cytoplasm and then bind to DNA
35
what are operons
regions of DNA that contain a group of closely related genes consisting of structural genes and regulating elements
36
regulatory sequences
include promoter, operator and terminator
37
why is operator position important
its regulation enables or prevents the transcription of genes into mRNA
38
E. Coli and how it helps in lactose metabolism
found in gut, helps avoid wasting energy by only producing appropriate enzyme when the nutrient is available
39
what ensure E coli only produces the enzyme required when lactose is present
lactose operon
40
what happens when lactose is present , how is it metabolised
lactose molecule reacts with the regulator protein, preventing it from binding with the operator gene, allowing it to be transcribed and lactose metabolised by the cell after digestion, repressor molecule blocks transcription again
41
what does it mean by lac operon is a inducible operon
transcription is turned on by the rpesence of a small effector molecule called the inducer concentration of inducer determines the activity of the operon
42
what does tryptophan function as
a co repressor that cooperates with a repressor protein to switch an operon off
43
what happens as more tryptophan accumulates
more tryptophan molecules can bind to the trp repressor, which can then bind to the trp operator and inhibit the synthesis of enzymes involved in tryptophan biosynthetic pathway